mRNA_2682 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158846
Unique NamemRNA_2682
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158846 vs. uniprot
Match: A0A835YPB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB3_9STRA)

HSP 1 Score: 400 bits (1027), Expect = 3.950e-140
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1 
Query:    1 MLVRQNAQELSDGGVCRLLLDALSTHPADARIQEAACRAVGYCAEASPGMRGELGDLTAGELDGCQLVCRALQLHPEQSLVQKWGLFAVMAMAQCQQNAVKLGCAGACTCAMEALRLHAGDRDVQETACQAVGKCSDASAALRDELGRLGACELVRTALQLHPASVLTQVWGLYAVACLAQSHSCALEXXXXXXXXXXXXXXXXXXXEADAQVRFRRRVPHHAS 672
            MLVRQNAQELSDGGVCRLLLDALSTHPADARIQEAACRAVGYCAEASPGMRGELGDLTAGELDGCQLVCRALQLHPEQSLVQKWGLFAVMAMAQCQQNAVKLGCAGACTCAMEALRLHAGDRDVQETACQAVGKCSDASAALRDELGRLGACELVRTALQLHPASVLTQVWGLYAVACLAQSHSCALEXXXXXXXXXXXXXXXXXXXEADAQVRFRRRVPHHAS
Sbjct:    1 MLVRQNAQELSDGGVCRLLLDALSTHPADARIQEAACRAVGYCAEASPGMRGELGDLTAGELDGCQLVCRALQLHPEQSLVQKWGLFAVMAMAQCQQNAVKLGCAGACTCAMEALRLHAGDRDVQETACQAVGKCSDASAALRDELGRLGACELVRTALQLHPASVLTQVWGLYAVACLAQSHSCALEXXXXXXXXXXXXXXXXXXXEADAQVRFRRRVPHHAS 224
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BLAST of jgi.p|Trimin1|158846 vs. uniprot
Match: A0A836CAT7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAT7_9STRA)

HSP 1 Score: 158 bits (400), Expect = 4.080e-41
Identity = 78/132 (59.09%), Postives = 100/132 (75.76%), Query Frame = 1 
Query:    1 MLVRQNAQELSDGGVCRLLLDALSTHPADARIQEAACRAVGYCAEASPGMRGELGDLTAGELDGCQLVCRALQLHPEQSLVQKWGLFAVMAMAQCQQNAVKLGCAGACTCAMEALRLHAGDRDVQETACQAV 396
            MLV QN + L  GGVC+LLL+A+  +P DA IQEAAC+AVG CAEASP M+ +L +L AG LDGC+L+C+A+QLHP+ +L Q WGLFA+ AMAQCQQ+A++LG AGAC   ++ALR H    D+Q   C AV
Sbjct:   72 MLVGQNHEHLLQGGVCQLLLEAMVAYPNDAGIQEAACQAVGCCAEASPDMKNQLAELNAGGLDGCRLMCQAMQLHPQANLTQSWGLFAITAMAQCQQDALRLGRAGACVVTVQALRSHTQGADLQAHGCAAV 203
[Close]
BLAST of jgi.p|Trimin1|158846 vs. uniprot
Match: A0A836C9T8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.590e-16
Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = 1 
Query:    1 MLVRQNAQELSDGGVCRLLLDALSTHPADARIQEAACRAVGYCAEASPGMRGELGDLTAGELDGCQLVCRALQLHPEQSLVQKWGLFAVMAMAQCQQNAVKLGCAGACTCAMEALRLHAGDRDVQE 378
            +L +QN + L +GGV  LL   L  H AD+ IQEAAC+AVG                            +ALQLHP++  VQ WG +AV  +AQ ++NA++LG AGAC   +EALR + GD +VQE
Sbjct:   50 VLAKQNYKVLFEGGVGGLLTHTLEAHSADSGIQEAACQAVG----------------------------KALQLHPQRVRVQTWGAYAVGCLAQGEENAIRLGRAGACEGVVEALRRYRGDAEVQE 147
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158846 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YPB3_9STRA3.950e-140100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAT7_9STRA4.080e-4159.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9T8_9STRA7.590e-1642.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:1854577..1859454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158846|e_gw1.7.168.1
Hectar predicted targeting categoryother localisation
TranscriptId159168
TrackFilteredModels1
ProteinId158846
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158846gene_2682Tribonema minus UTEX_B_3156 geneContig_7 1854577..1859454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158846Trimin1|158846|e_gw1.7.168.1Tribonema minus UTEX_B_3156 polypeptideContig_7 1854577..1859454 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2682_2exon_2682_2Tribonema minus UTEX_B_3156 exonContig_7 1854577..1854876 -
exon_2682_1exon_2682_1Tribonema minus UTEX_B_3156 exonContig_7 1859080..1859454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2682CDS_2682Tribonema minus UTEX_B_3156 CDSContig_7 1859080..1859454 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2682 ID=mRNA_2682|Name=jgi.p|Trimin1|158846|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=675bp|location=Sequence derived from alignment at Contig_7:1854577..1859454- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGAGGCAGAACGCCCAGGAGCTGTCTGACGGCGGCGTCTGCCG
GCTGCTGCTGGACGCTCTGTCGACGCATCCCGCAGATGCTCGCATCCAAG
AGGCGGCGTGTCGAGCAGTGGGCTACTGTGCCGAGGCGAGCCCAGGCATG
AGGGGTGAGCTGGGGGACCTGACAGCCGGGGAGCTTGACGGCTGTCAGCT
GGTGTGTCGCGCTCTGCAGCTGCATCCGGAGCAGAGCCTTGTTCAGAAAT
GGGGTTTATTTGCCGTCATGGCGATGGCGCAGTGCCAGCAGAACGCCGTC
AAGCTGGGGTGTGCTGGTGCCTGCACCTGCGCGATGGAGGCCTTGCGCCT
TCACGCCGGCGACAGGGACGTGCAGGAGACGGCCTGCCAGGCAGTGGGCA
AGTGCTCTGACGCCAGCGCCGCCCTCAGGGACGAGCTGGGGAGGCTGGGC
GCGTGCGAGCTCGTGCGCACGGCGTTGCAGCTGCACCCCGCGAGCGTGCT
GACGCAGGTGTGGGGGCTGTACGCCGTCGCGTGCCTGGCGCAGAGTCACA
GCTGCGCCTTGGAGTTCGGGCGCGCCGGCACCTGCGAGGTCGTACTGGCG
GGCATTCATGCGCATCCAAGTGAGGCCGACGCTCAGGTGCGGTTCCGACG
CCGCGTTCCTCATCATGCGTCGTAG
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protein sequence of jgi.p|Trimin1|158846

>Trimin1|158846|e_gw1.7.168.1 ID=Trimin1|158846|e_gw1.7.168.1|Name=jgi.p|Trimin1|158846|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp
MLVRQNAQELSDGGVCRLLLDALSTHPADARIQEAACRAVGYCAEASPGM
RGELGDLTAGELDGCQLVCRALQLHPEQSLVQKWGLFAVMAMAQCQQNAV
KLGCAGACTCAMEALRLHAGDRDVQETACQAVGKCSDASAALRDELGRLG
ACELVRTALQLHPASVLTQVWGLYAVACLAQSHSCALEFGRAGTCEVVLA
GIHAHPSEADAQVRFRRRVPHHAS*
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mRNA from alignment at Contig_7:1854577..1859454-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2682 ID=mRNA_2682|Name=jgi.p|Trimin1|158846|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4878bp|location=Sequence derived from alignment at Contig_7:1854577..1859454- (Tribonema minus UTEX_B_3156 )
ATGCTGGTGAGGCAGAACGCCCAGGAGCTGTCTGACGGCGGCGTCTGCCG
GCTGCTGCTGGACGCTCTGTCGACGCATCCCGCAGATGCTCGCATCCAAG
AGGCGGCGTGTCGAGCAGTGGGCTACTGTGCCGAGGCGAGCCCAGGCATG
AGGGGTGAGCTGGGGGACCTGACAGCCGGGGAGCTTGACGGCTGTCAGCT
GGTGTGTCGCGCTCTGCAGCTGCATCCGGAGCAGAGCCTTGTTCAGAAAT
GGGGTTTATTTGCCGTCATGGCGATGGCGCAGTGCCAGCAGAACGCCGTC
AAGCTGGGGTGTGCTGGTGCCTGCACCTGCGCGATGGAGGCCTTGCGCCT
TCACGCCGGCGACAGGGACGTGCAGGTGAGCGCGCTGTCCCCGTGCCGGA
TCTCTGGCTGGCACACCAGAGACATCTTTTCTCATTCTGCCGAACTGCTC
GATGTGGCTTGCAGCTGGAGCGATCACCTGATGATCGGCCTTAAGGCATC
TGGTAGGACACATCACGCAGTGCTGTTGTGGAAGCACGGGCATCGCGGTG
GCTCTGCTCGTGGCCGCACGCAAAACAAAAAATCCCTGAACCCTTGAATC
ATAAAACCCCATAGTATTTCAGGTGTATGAGGGCGCTCTACCACTCATGG
CTGTGGCAGCCCGCACACACACAGTGCCACGCCAGAATGCCATCGTTCTC
CCGGCGCTCACGCTCACCACGCACACACGCCTCCCGCAGGCGTGGGGCTG
CGCCGCCGTCGCCAACCTGCTCACCGACTGCCCAGTAAATCACGCCGCGG
TGCGCGCCGGCGGCGCCGCAGCAGCGCTCATTGCTGCGGCGCTCGACGCG
CACGCCGACGACGAGGAGGTGCAGGCGCACGCGTTGGGCGCTGCGGCAGA
GCTGGCGGTCGATGCCGCTGACAGCGCTCAGCTCGGCGCCGCCGGCGTCT
GCGAGCGCGCGCTGGCGGCGCTGCAGCAGCGGCGCCGCCCGGCGGCGGCG
GCGGCGGCGTGCACCGCCGTCGCGAACCTGTCGGCGCACGCCGCCAACGC
GGCGCGCATCGGCGGCGGCGGCGGCTGCGCGGCGCTGCTGCGCGTGCTGC
GCGACGGCGGCGGCGGTGGCGGCGGCGGCTCACGCAACGCGGAGGTGCGC
GAGTGGGCGTGGATGGCGATCGGCAACCTCGTGGAGCAGCGAGACAACAG
CGCGCGCGTGGGGGACGCGGGCGGGTGCCCGCTGGCGATGGCGGCGTACC
GCGACGCGCGCGACGCCTCCGCCGCTGCTGAGCAGCGCGACGCGGGCGCC
GCGCTGCAGCTGCTGCGCGCCGTCATCGCCGGCCTCACGGCGCACCCCGC
AAACGCTGCGCGCCTCGCCATGCCGCCGGCGGGCGACATGGAGCTGCTGA
CGGAGGCGCTGCTGGCGCCCGGGCGCGACGCCGCGCAGCAGGCCGCGGCG
GAGGAGCGGCAGCGCGCCGCGGACGGCGCCGCGCGCGCCACGGAGGAAGT
GCGCCAGCTGGCGGCGCGCGCGGACGAGCAGGCCGCCGCGTTGCACGCCA
AGGACGACGAGCTGGCGGACCTGCTCACGAGCATGGCGTGCCTCGAGGCG
AGCGCCGCGCGGCACGCGGCGCGAGCCGACGACGCGCAGCGCGCGCTGGA
GGGCGCGCAGCTGGCACTGGAGGACAGGCAGCGCCCACTCACGGAAGCCG
CGGCGGCGGCGGCGGCGGAGGCGCAGCGCGTGCGCGCCGCCAACGCCGCC
GCGCTTCTGGCGGCGCAGGGCGAGCTCGGCGCCAACGCCGCCACGCTGAC
GGAGGCGCAGCGCGGGCTGGCGGCGGCGCTACGCGCGCGAGAGGGCGACG
CGGCCGCCTCGCGGCGGCGCGGCGGCAGGCGGCGGAGGCGGCGCAGCAGC
GCGCGGCGGCGCAGCGCGAGCTCGCGGACGAGCGGGAGCGGCGCGGCGCT
GCGCTAGCCGCGCTGGAGCGCAGGTTGGTGAACGAGCAGCAGCTGCGCGC
GGCGGAGGCGGAGCGCGCGGCGCAGCACGCCGACAAGCTGCGGTGCCAGC
TGGAGCTCGAGGCAGAGCAGCGCGCGCACGACGCAAAGACCGCCCAGCTG
TGCATTGATGCGGTGATCGACGGGGCATCGAAGGTGCGCGCTGCGGCCGA
GGAGCAGCAGCAGCGCGACAGATGCCAGATCGCTGAGCAGCAGTGCAAGA
TTGCACATTTCGCGGCGCGGTGGCAGGCCATCAAGCGGGCGGTGTTGGCG
GCGGACGGCGGCGGCGGCAGCGGCGGCGACGCCTGGGATGCAGTGCAGCG
CGCCCCGGCGCAGCTCGAGGCGGCGCAGCACGCCTCAGCGCAGTACGCAG
CCCAGCAGCACACGGCCCACCACGCTGCAGCGCAGCACGCTTCCGCAAAG
CACGCGCCGCCGGCGCAGCGGTCCTTCGCGCAGCTCGCATCGCGGTTCGC
CGCCTCAGCGCAGCTTGCCCCGCACAACGCGGCGGGGCAGCGCGCTCCGG
TGGTGTTCGATCTGACGCTGCAGCAGTCTGCACCGCCGCGCGCGTCGGAG
CAGCACGGCACGATGCAGCACGCGCTGCCAGTGGCTCAGCAGCAGGCGCT
GACGCTGCATCGCGACGCTGCGGCGCAGGACGCGTCCGCGCAGCGTGCCG
CGCCGCAGCAGCGCGCCGCAGAGCCGCGCGCCGCGGCGCTGCACGCGCTG
GCGGAGGAGGACTCGGCGCAGCCGGCGCTGCCGCGGCGCGCTTCAGCGGC
AGCAGCAGCGCAGCACGCATGGCAGCACAATGCCCCGCTGCAGCGCGCAC
CGGCGCATGACATGTCATCGCAGTATGCTGCAGCACTCTACGCTGCTTCG
CAGCATGCTGCAGCTCAGCACGCTGCGATCGGCGGCGGCGGCGGCCCTGG
CGGCGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCGGCGGCGGCGGCGGCG
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAATGA
CGGGGCCGCAAAGAGGCAGCGCACAGGGTGATGCGGAGGAAACAAACGGA
ACAGCACACGCTGCTGGAATGGTAGAAGAAGGAAGACCTGCGGATCGAAT
ATTGCGGCATGGTACCAACACGTGTCAGCTGCACAGTGCGTAAGGATGCG
CTTTGCTGCGCTGCGTACTACGTACGATGGGCGGAGGCACCGACAGCCTC
AATCTCAAGATCGATCTTGATTGGGCATTTGGCTTAAGCTTTTTGAAATG
CATGGTGCCGGAGAGGGCGGGGAGGGGTGGGCAGGGGGGGGGGGGAAGGG
GGGGGGGGGGGGGGGGGAGACTGTGACTGCACAACACGTGGCGGCTATCA
ACTGCCTCGTCGTCGTGCAGCTGTGACAGTCTGTCTCTTGAGATGAGCTT
TTGTAGTTTTAACTGCAATCTGTGGACGCGTTTGGGCCACGTGCGTGTGC
TGGCGCAAGGGTCAAGAACGTGCATGTTCGTGTGTGCATGTGTCTGTCAC
TGCTGTAATGCAATGCAGAGTTAATTGCTGGTCCGCTGGAGTGCAACTTC
AAACTCTTCACGTGTGTGGCCGTCATGAACCTCAGTGCCTCAGATAACCA
TTTGATCTTGAGGACTCAAGATATTCGTGCCTCTCCCATCCCCCTGCGCA
TGACAATCAGGGATGTGCGCAATGATGTTGCCCAGATCAGTAGACTCAGT
CTGGTGTTGGTGAGGTCATGCACGACGAGCCAATTGTTTGCTCGTCAAGT
CACCCAGCATGTCAGTGCTCATCTCGGCATGCTGCCTTGCACACTCATCA
GGACTCCGCATCTGGTGATCCCGCCAGTCCGTTCCATTCTCTTCGTGCAC
TTCTTCAGACCACCGCATTCCGATCCATCAAAAAAATACATACATGGTCT
CCAAGGGAACTTCAACTTCAATAGGAACTTCAAGAGGTCCGTGCTGGAAA
AGCACTTGAGTCCCGATGCCTGTCTGCCTTACATGGATCGAAGGCTGCTT
CGTATGATGGACACTTTATTCAGCCTAGGTGTGATGGCCTGCTGAAAGCT
GCTGCAATCGGCAGAGGGGCAAAGCCCAGCTTCAATCCTGCTCCCACTAC
AAACCCCCGCGTGATACACACTCCACGGCGGCTGTACAGCTCAGCAACCG
GCGAGCACCATGCCTAAGAATGTCCAGCGTCCAGCTCAACGCCGTTCTTC
TGCATCTGGCAAGCAGCGTAAGGCCAAACAGGCTGCACTCGCGGAGAAAT
CTTTGAATCTGCAGGGAGTGCTGGAAGCTCTGAGGAACCGCAAGAAGCGC
GATACCACTCCCGACGGGAGAAGCTGCTGGAGAGGCTCTGCTACGACATC
CCGGATCTGGCTCAGGACGACGCCGCCAGCCGCATGATAGGGGGCGCAGG
GTGCGAGGCAGCACTTTCCGCGCTGCACTACTTCCCCCGCAACGCCGACC
TCCAGCTCTACGCCTGCGTCGCCGTGGCGCAGCTGGCGAAGGAGAACCAC
GGCAAGCTGCAGCAGCTGGGCGTCTCCAAGGCGCTGCTGGACACCATGGA
CGCCTACCCCGCCGATGCCGGCGTACAGGAGACGGCCTGCCAGGCAGTGG
GCAAGTGCTCTGACGCCAGCGCCGCCCTCAGGGACGAGCTGGGGAGGCTG
GGCGCGTGCGAGCTCGTGCGCACGGCGTTGCAGCTGCACCCCGCGAGCGT
GCTGACGCAGGTGTGGGGGCTGTACGCCGTCGCGTGCCTGGCGCAGAGTC
ACAGCTGCGCCTTGGAGTTCGGGCGCGCCGGCACCTGCGAGGTCGTACTG
GCGGGCATTCATGCGCATCCAAGTGAGGCCGACGCTCAGGTGCGGTTCCG
ACGCCGCGTTCCTCATCATGCGTCGTAG
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Coding sequence (CDS) from alignment at Contig_7:1854577..1859454-

>mRNA_2682 ID=mRNA_2682|Name=jgi.p|Trimin1|158846|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=675bp|location=Sequence derived from alignment at Contig_7:1854577..1859454- (Tribonema minus UTEX_B_3156 )
ATGCTGGTGAGGCAGAACGCCCAGGAGCTGTCTGACGGCGGCGTCTGCCG
GCTGCTGCTGGACGCTCTGTCGACGCATCCCGCAGATGCTCGCATCCAAG
AGGCGGCGTGTCGAGCAGTGGGCTACTGTGCCGAGGCGAGCCCAGGCATG
AGGGGTGAGCTGGGGGACCTGACAGCCGGGGAGCTTGACGGCTGTCAGCT
GGTGTGTCGCGCTCTGCAGCTGCATCCGGAGCAGAGCCTTGTTCAGAAAT
GGGGTTTATTTGCCGTCATGGCGATGGCGCAGTGCCAGCAGAACGCCGTC
AAGCTGGGGTGTGCTGGTGCCTGCACCTGCGCGATGGAGGCCTTGCGCCT
TCACGCCGGCGACAGGGACGTGCAGGAGACGGCCTGCCAGGCAGTGGGCA
AGTGCTCTGACGCCAGCGCCGCCCTCAGGGACGAGCTGGGGAGGCTGGGC
GCGTGCGAGCTCGTGCGCACGGCGTTGCAGCTGCACCCCGCGAGCGTGCT
GACGCAGGTGTGGGGGCTGTACGCCGTCGCGTGCCTGGCGCAGAGTCACA
GCTGCGCCTTGGAGTTCGGGCGCGCCGGCACCTGCGAGGTCGTACTGGCG
GGCATTCATGCGCATCCAAGTGAGGCCGACGCTCAGGTGCGGTTCCGACG
CCGCGTTCCTCATCATGCGTCGTAG
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