mRNA_2657 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133156
Unique NamemRNA_2657
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A835YN16_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN16_9STRA)

HSP 1 Score: 165 bits (417), Expect = 6.930e-52
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1
Query:    1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231
            GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS
Sbjct:    1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 77          
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM)

HSP 1 Score: 112 bits (280), Expect = 7.530e-30
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231
            G   W  +A  +PGRTSKQCRERW ++LDPS+ R  +S EED +IL AQARLGNRWS IAA+LPGRTE+AVK+RWKS
Sbjct:   79 GRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 155          
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A662WMC1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMC1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.250e-29
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   13 WRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231
            W D+A  +PGRTSKQCRERW ++LDP++ R  +S EED +IL AQARLGNRWS IAA+LPGRTE+AVK+RWKS
Sbjct:   79 WGDVAAKIPGRTSKQCRERWHNHLDPAIVRGAYSPEEDRLILEAQARLGNRWSVIAAMLPGRTEDAVKIRWKS 151          
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT)

HSP 1 Score: 111 bits (277), Expect = 1.370e-28
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231
            G   W  +A  +PGRTSKQCRERW ++LDPS+ R  +S EED +IL AQARLGNRWS IAA+LPGRTE+AVK+RWKS
Sbjct:  152 GRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 228          
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A835Z1Q6_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.190e-28
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRW 225
            G   W  LA HMPGRTSKQCRERW  +LDP++ +S ++ EEDA IL+ Q  LGN+WS+IA  LPGRTENA+K+RW
Sbjct:    4 GYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 78          
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A833WMT2_PHYIN (Myb-like DNA-binding domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WMT2_PHYIN)

HSP 1 Score: 108 bits (270), Expect = 4.500e-28
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231
            G +QW  +A  +PGRT+KQCR+RWC+ LDP + R  WS EEDA++++ Q+ +GN WSRIAA LPGRT+NAVK RW S
Sbjct:   30 GASQWALVASFLPGRTAKQCRDRWCNQLDPCINRGAWSAEEDALLVTLQSNVGNAWSRIAANLPGRTDNAVKNRWNS 106          
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A329SV82_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SV82_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.870e-28
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231
            G +QW  +A  +PGRT+KQCR+RWC+ LDPS+ R  WS +EDA++++ Q  LGN WSRIAA LPGRT+NAVK RW S
Sbjct:   76 GASQWAIVASFLPGRTAKQCRDRWCNQLDPSINRGAWSAQEDALLVTQQQLLGNAWSRIAASLPGRTDNAVKNRWNS 152          
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A2P4Y3D9_9STRA (Myb-like DNA-binding protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3D9_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.400e-27
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231
            G   W  +A  +PGRTSKQCRERW ++LDPS+ R  ++ EED +IL AQARLGNRWS IAA+LPGRTE+AVK+RWKS
Sbjct:  161 GRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYTQEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 237          
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A0W8DM41_PHYNI (Gamma-soluble NSF attachment protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DM41_PHYNI)

HSP 1 Score: 111 bits (278), Expect = 2.480e-27
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231
            G   W  +A  +PGRTSKQCRERW ++LDPS+ R  +S EED +IL AQARLGNRWS IAA+LPGRTE+AVK+RWKS
Sbjct:  182 GRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 258          
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A1V9Z7N9_9STRA (Myb-like DNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7N9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.700e-27
Identity = 49/76 (64.47%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    4 CAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231
            C  W  +A+ +PGRT KQCRERW ++LDPS+ +  ++ EED VILSAQARLGN+WS+IA LLPGRTE++VK+RWKS
Sbjct:  323 CNNWGQIAEQIPGRTPKQCRERWRNHLDPSINKGPYTAEEDKVILSAQARLGNKWSQIAQLLPGRTEDSVKIRWKS 398          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YN16_9STRA6.930e-52100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
H3G911_PHYRM7.530e-3067.53Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662WMC1_9STRA5.250e-2969.86Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
D0NJN5_PHYIT1.370e-2867.53Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]
A0A835Z1Q6_9STRA3.190e-2862.67Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A833WMT2_PHYIN4.500e-2859.74Myb-like DNA-binding domain n=1 Tax=Phytophthora i... [more]
A0A329SV82_9STRA4.870e-2861.04Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2P4Y3D9_9STRA1.400e-2766.23Myb-like DNA-binding protein (Fragment) n=1 Tax=Ph... [more]
A0A0W8DM41_PHYNI2.480e-2767.53Gamma-soluble NSF attachment protein n=1 Tax=Phyto... [more]
A0A1V9Z7N9_9STRA3.700e-2764.47Myb-like DNA-binding protein n=1 Tax=Achlya hypogy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:1692735..1693475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133156|gw1.7.31.1
DescriptionMyb-like DNA-binding protein. Source PGD
COG categoryK
Max annot lvl121069|Pythiales
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,1MIM8@121069|Pythiales
Evalue3.14e-28
Seed ortholog36331.EPrPI00000019366
Hectar predicted targeting categoryother localisation
TranscriptId133478
TrackFilteredModels1
ProteinId133156
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133156gene_2657Tribonema minus UTEX_B_3156 geneContig_7 1692735..1693475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133156Trimin1|133156|gw1.7.31.1Tribonema minus UTEX_B_3156 polypeptideContig_7 1692735..1693475 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2657_2exon_2657_2Tribonema minus UTEX_B_3156 exonContig_7 1692735..1692897 -
exon_2657_1exon_2657_1Tribonema minus UTEX_B_3156 exonContig_7 1693408..1693475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2657CDS_2657Tribonema minus UTEX_B_3156 CDSContig_7 1693408..1693475 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2657 ID=mRNA_2657|Name=jgi.p|Trimin1|133156|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_7:1692735..1693475- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCTGCGCGCAGTGGCGCGACCTCGCGCAGCACATGCCCGGGCGCACGTC
CAAGCAGTGCAGGGAGAGGTGGTGCAGCTACCTGGACCCCTCCCTCAAGC
GCTCCATCTGGTCAGGCGAAGAAGACGCCGTCATCCTCTCCGCGCAGGCG
CGCCTCGGCAACCGCTGGAGCCGCATCGCCGCGCTGCTGCCGGGCCGCAC
CGAGAACGCCGTCAAGCTGCGCTGGAAGTCG
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protein sequence of jgi.p|Trimin1|133156

>Trimin1|133156|gw1.7.31.1 ID=Trimin1|133156|gw1.7.31.1|Name=jgi.p|Trimin1|133156|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=77bp
GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQA
RLGNRWSRIAALLPGRTENAVKLRWKS
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mRNA from alignment at Contig_7:1692735..1693475-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2657 ID=mRNA_2657|Name=jgi.p|Trimin1|133156|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=741bp|location=Sequence derived from alignment at Contig_7:1692735..1693475- (Tribonema minus UTEX_B_3156 )
GGCTGCGCGCAGTGGCGCGACCTCGCGCAGCACATGCCCGGGCGCACGTC CAAGCAGTGCAGGGAGAGGTGAGTGCGCTGCCTGCAGAGCCCCCAATACA TAGATACCCTTCAGTTTGACATGCGCAGCACATGCCCGGGCACACGTCCA AGCAGTACAGGGAGAGGTGAGTGCGCCGCCTGCAGTGCCCGCCGCCGATG CATGCATGCATGTCACTGCAGCTGCGCCGTGTGCTGCACGCGGCATCACG TGGGGCGCGTGGCGCAGAGCGCGCCTTCGATGCCGCTTTCATGTGGCCAG CAACTGTCGCGCAGCGCCCGGTGGTCACCTCTACAGCGGCGCGCTGCGAT GCGCTTTCACAGCGGACACCCAATCCGAGCTGCCGTCCCGCTTACTGGAC TGCATGCGCGCCCCCGCCGCCCCTTGACGCGTTCTGCCGTACGCAGTGAT CGTTCTGTGCCATCTGCATTACTATCGTCGCGCCGCACTATCGTCGCGCC GCACGACGCGTGACGTCGCAGCGAGCGCTCATCCTGCCGCCGCCGCTGCC GCTGCTGCTGCCGCTGCGCGCCGCGCAGGTGGTGCAGCTACCTGGACCCC TCCCTCAAGCGCTCCATCTGGTCAGGCGAAGAAGACGCCGTCATCCTCTC CGCGCAGGCGCGCCTCGGCAACCGCTGGAGCCGCATCGCCGCGCTGCTGC CGGGCCGCACCGAGAACGCCGTCAAGCTGCGCTGGAAGTCG
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Coding sequence (CDS) from alignment at Contig_7:1692735..1693475-

>mRNA_2657 ID=mRNA_2657|Name=jgi.p|Trimin1|133156|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=231bp|location=Sequence derived from alignment at Contig_7:1692735..1693475- (Tribonema minus UTEX_B_3156 )
GGCTGCGCGCAGTGGCGCGACCTCGCGCAGCACATGCCCGGGCGCACGTC
CAAGCAGTGCAGGGAGAGGTGGTGCAGCTACCTGGACCCCTCCCTCAAGC
GCTCCATCTGGTCAGGCGAAGAAGACGCCGTCATCCTCTCCGCGCAGGCG
CGCCTCGGCAACCGCTGGAGCCGCATCGCCGCGCTGCTGCCGGGCCGCAC
CGAGAACGCCGTCAAGCTGCGCTGGAAGTCG
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