mRNA_2657 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A835YN16_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN16_9STRA) HSP 1 Score: 165 bits (417), Expect = 6.930e-52 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 Query: 1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS Sbjct: 1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 77
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM) HSP 1 Score: 112 bits (280), Expect = 7.530e-30 Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1 Query: 1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231 G W +A +PGRTSKQCRERW ++LDPS+ R +S EED +IL AQARLGNRWS IAA+LPGRTE+AVK+RWKS Sbjct: 79 GRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 155
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A662WMC1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMC1_9STRA) HSP 1 Score: 111 bits (278), Expect = 5.250e-29 Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1 Query: 13 WRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231 W D+A +PGRTSKQCRERW ++LDP++ R +S EED +IL AQARLGNRWS IAA+LPGRTE+AVK+RWKS Sbjct: 79 WGDVAAKIPGRTSKQCRERWHNHLDPAIVRGAYSPEEDRLILEAQARLGNRWSVIAAMLPGRTEDAVKIRWKS 151
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT) HSP 1 Score: 111 bits (277), Expect = 1.370e-28 Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1 Query: 1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231 G W +A +PGRTSKQCRERW ++LDPS+ R +S EED +IL AQARLGNRWS IAA+LPGRTE+AVK+RWKS Sbjct: 152 GRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 228
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A835Z1Q6_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q6_9STRA) HSP 1 Score: 105 bits (262), Expect = 3.190e-28 Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1 Query: 1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRW 225 G W LA HMPGRTSKQCRERW +LDP++ +S ++ EEDA IL+ Q LGN+WS+IA LPGRTENA+K+RW Sbjct: 4 GYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 78
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A833WMT2_PHYIN (Myb-like DNA-binding domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WMT2_PHYIN) HSP 1 Score: 108 bits (270), Expect = 4.500e-28 Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231 G +QW +A +PGRT+KQCR+RWC+ LDP + R WS EEDA++++ Q+ +GN WSRIAA LPGRT+NAVK RW S Sbjct: 30 GASQWALVASFLPGRTAKQCRDRWCNQLDPCINRGAWSAEEDALLVTLQSNVGNAWSRIAANLPGRTDNAVKNRWNS 106
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A329SV82_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SV82_9STRA) HSP 1 Score: 109 bits (273), Expect = 4.870e-28 Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231 G +QW +A +PGRT+KQCR+RWC+ LDPS+ R WS +EDA++++ Q LGN WSRIAA LPGRT+NAVK RW S Sbjct: 76 GASQWAIVASFLPGRTAKQCRDRWCNQLDPSINRGAWSAQEDALLVTQQQLLGNAWSRIAASLPGRTDNAVKNRWNS 152
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A2P4Y3D9_9STRA (Myb-like DNA-binding protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3D9_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.400e-27 Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 1 Query: 1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231 G W +A +PGRTSKQCRERW ++LDPS+ R ++ EED +IL AQARLGNRWS IAA+LPGRTE+AVK+RWKS Sbjct: 161 GRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYTQEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 237
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A0W8DM41_PHYNI (Gamma-soluble NSF attachment protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DM41_PHYNI) HSP 1 Score: 111 bits (278), Expect = 2.480e-27 Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1 Query: 1 GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231 G W +A +PGRTSKQCRERW ++LDPS+ R +S EED +IL AQARLGNRWS IAA+LPGRTE+AVK+RWKS Sbjct: 182 GRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 258
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Match: A0A1V9Z7N9_9STRA (Myb-like DNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7N9_9STRA) HSP 1 Score: 112 bits (279), Expect = 3.700e-27 Identity = 49/76 (64.47%), Postives = 63/76 (82.89%), Query Frame = 1 Query: 4 CAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQARLGNRWSRIAALLPGRTENAVKLRWKS 231 C W +A+ +PGRT KQCRERW ++LDPS+ + ++ EED VILSAQARLGN+WS+IA LLPGRTE++VK+RWKS Sbjct: 323 CNNWGQIAEQIPGRTPKQCRERWRNHLDPSINKGPYTAEEDKVILSAQARLGNKWSQIAQLLPGRTEDSVKIRWKS 398 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133156 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2657 ID=mRNA_2657|Name=jgi.p|Trimin1|133156|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_7:1692735..1693475- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCTGCGCGCAGTGGCGCGACCTCGCGCAGCACATGCCCGGGCGCACGTCback to top protein sequence of jgi.p|Trimin1|133156 >Trimin1|133156|gw1.7.31.1 ID=Trimin1|133156|gw1.7.31.1|Name=jgi.p|Trimin1|133156|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=77bp GCAQWRDLAQHMPGRTSKQCRERWCSYLDPSLKRSIWSGEEDAVILSAQAback to top mRNA from alignment at Contig_7:1692735..1693475- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2657 ID=mRNA_2657|Name=jgi.p|Trimin1|133156|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=741bp|location=Sequence derived from alignment at Contig_7:1692735..1693475- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_7:1692735..1693475- >mRNA_2657 ID=mRNA_2657|Name=jgi.p|Trimin1|133156|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=231bp|location=Sequence derived from alignment at Contig_7:1692735..1693475- (Tribonema minus UTEX_B_3156 )back to top |