mRNA_247 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131761
Unique NamemRNA_247
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A836CEP9_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP9_9STRA)

HSP 1 Score: 280 bits (716), Expect = 8.710e-96
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
Query:    1 VIYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRRKRKKQEP 393
            VIYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRRKRKKQEP
Sbjct:    1 VIYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRRKRKKQEP 131          
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A329SFP1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFP1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.640e-27
Identity = 55/125 (44.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    4 IYVLGLRHGKYYVGRTPR--LPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRR 372
            IYVL L +GKYYVG+T R  + +RL EH  GKG+AWT+   + R L I   ++     +   E+K T +WM +YGV+NVRGG+Y+++ + P  + A+ +Q+ GS D C  CGS  HFA  CP ++
Sbjct:   96 IYVLALANGKYYVGKTARANVDERLEEHKNGKGSAWTR---LHRPLRIAEITRNADPFD---EDKFTKKWMLKYGVENVRGGSYSRVNFTPGELDAVLQQLRGSTDQCFVCGSKNHFAAKCPDKK 214          
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A6C0K290_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K290_9ZZZZ)

HSP 1 Score: 106 bits (265), Expect = 3.770e-26
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSR 369
            IYVL L+ GKYYVG++  +  R ++H  GKG+AWT  Y    LL      +C   V+   E+K   E+M++YG++NVRGGTY Q+  +   M+A+ +++ G  D C ECG   HFA  CP++
Sbjct:    6 IYVLKLQGGKYYVGKSTDVIGRYQQHLSGKGSAWTNKYKPISLL------ECKSDVSPFEEDKVVKEYMSKYGIENVRGGTYTQMTLDAVQMEALNREMRGGTDACHECGQKGHFAKYCPNK 121          
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A6C0LCR0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LCR0_9ZZZZ)

HSP 1 Score: 105 bits (261), Expect = 7.530e-26
Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRRKRKKQE 390
            +YVL L++ K+YVG++  +P R +EH EGKG++WTK +   R++ +K        ++   E   T ++M +YG+ NVRGG+Y Q++  PE    I K+  G+AD C +C    HFA  C    K K +E
Sbjct:    5 VYVLELKNNKWYVGKSLNVPKRFQEHLEGKGSSWTKKHKPVRIIEVKLI------ISQHDENNLTKDYMKKYGIQNVRGGSYTQIELSPEITDVIQKEFNGNADKCYKCQKYGHFANKCTEETKEKSEE 127          
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: W2QEQ1_PHYPN (Uncharacterized protein (Fragment) n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QEQ1_PHYPN)

HSP 1 Score: 107 bits (266), Expect = 2.630e-25
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    4 IYVLGLRHGKYYVGRTPR--LPDRLREHYEGKGAAWTKHY-PMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRR 372
            IYVL L  GK+YVG+T R  + +RL EH  GKG+AWT+ Y P+    +I+ +           E+K T +WM +YG++NVRGG+Y+++   P  + A+ +Q+ GS D C  CGS  HFA  CP ++
Sbjct:   86 IYVLALVEGKFYVGKTARANVDERLEEHKSGKGSAWTRLYRPLRIAETIRNSDPFD-------EDKFTKKWMLKYGIENVRGGSYSRVDLTPGDIDALSRQLRGSTDQCFVCGSKSHFAAQCPDKK 204          
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A0P0YND3_9PHYC (Uncharacterized protein n=1 Tax=Yellowstone lake phycodnavirus 3 TaxID=1586715 RepID=A0A0P0YND3_9PHYC)

HSP 1 Score: 103 bits (256), Expect = 3.210e-25
Identity = 43/122 (35.25%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSR 369
            +Y L L  GKYY+G++  L  RL  H+ G G+AWT+ Y  ++++ ++        V+   E+K T E+M +YG+DNVRGG Y Q++   E+ +++ +++ G+ D+C +C    H+A+ C +R
Sbjct:    5 VYALKLAGGKYYIGKSDNLDQRLESHFTGSGSAWTREYKPQKVIEVREN------VSRFEEDKMTKEYMEKYGIDNVRGGAYTQVELPDESRESLQREIRGTTDVCFKCNRPGHWASQCYAR 120          
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A6C0JUE5_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JUE5_9ZZZZ)

HSP 1 Score: 102 bits (254), Expect = 1.350e-24
Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHY-PMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSC 360
            IY+L L++ KYY+G+T  + +R ++H  G G++WTK Y P+  +  IK  SQ         E+K   E+MA+YG++NVRGGTY  ++ +  ++  + K++W S +LC  CG   HF   C
Sbjct:    4 IYILKLKNNKYYIGKTQDVENRFKQHINGVGSSWTKKYKPISIIKQIKSTSQFD-------EDKYVKEYMAKYGIENVRGGTYTSIELDDISLFQLQKELWHSKNLCTRCGRNTHFIKDC 116          
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A7S1KRU8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KRU8_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 4.120e-24
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWT-KHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRRK 375
            IYVL L++ KYYVG+T  L  RL  H+EG+G+AWT KH P    L +++  +     +   E+K T+E+M R GVDNVRGG+Y Q+       K I +Q+    D C  C    HF   CPS +K
Sbjct:   63 IYVLQLQNDKYYVGKTQNLKGRLDAHFEGRGSAWTAKHRP----LHVQHCFEANSNSHSFEEQKCTLEYMHRKGVDNVRGGSYCQVSLSRGVRKEILRQIDSMCDHCFLCHEAGHFVRDCPSSKK 183          
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A6G6XN51_9PHYC (Uncharacterized protein n=1 Tax=Dishui Lake phycodnavirus 2 TaxID=2704071 RepID=A0A6G6XN51_9PHYC)

HSP 1 Score: 99.8 bits (247), Expect = 9.050e-24
Identity = 47/121 (38.84%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPS 366
            IYVL L + KYY+GRT  L +R+  HY G+G+ WT+ Y     + I          +   E+K T+++M +YG+DNVRGG++ +L       K+I + ++G+ D C  CG+  HFA  CPS
Sbjct:    3 IYVLKLENEKYYIGRTNDLKNRVEVHYRGEGSLWTQKYRPTSTIEIIETD------DPYDEDKVTLKYMEKYGIDNVRGGSFVRLVLSGYEKKSIQQMIYGNTDNCFRCGNSGHFAIECPS 117          
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A6C0LCT8_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LCT8_9ZZZZ)

HSP 1 Score: 100 bits (248), Expect = 1.220e-23
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHY-PMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSC 360
            IY+L L+ GKYY+G+T  +  R  EH  G G+ WTK Y P+  + S+   S          E+K   E+MA+YG+DNVRGGTY+ +  +   +  + K++  S +LC  CG G HF   C
Sbjct:    4 IYILRLKEGKYYIGKTKNVDKRWNEHITGDGSGWTKKYKPISLIKSVISTSYFD-------EDKYVKEYMAKYGIDNVRGGTYSNIDLDDNTISVLEKEIRHSKNLCTRCGRGTHFIKDC 116          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEP9_9STRA8.710e-96100.00GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A329SFP1_9STRA9.640e-2744.00Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6C0K290_9ZZZZ3.770e-2641.80Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0LCR0_9ZZZZ7.530e-2637.98Uncharacterized protein n=1 Tax=viral metagenome T... [more]
W2QEQ1_PHYPN2.630e-2542.06Uncharacterized protein (Fragment) n=9 Tax=Phytoph... [more]
A0A0P0YND3_9PHYC3.210e-2535.25Uncharacterized protein n=1 Tax=Yellowstone lake p... [more]
A0A6C0JUE5_9ZZZZ1.350e-2438.33GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A7S1KRU8_9EUKA4.120e-2442.40Hypothetical protein (Fragment) n=1 Tax=Percolomon... [more]
A0A6G6XN51_9PHYC9.050e-2438.84Uncharacterized protein n=1 Tax=Dishui Lake phycod... [more]
A0A6C0LCT8_9ZZZZ1.220e-2339.17GIY-YIG domain-containing protein n=1 Tax=viral me... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:822217..822609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131761|gw1.3.67.1
BRITEko00000,ko03000
KEGG koko:K09250
Descriptionzinc finger
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E365@1|root,2SAAX@2759|Eukaryota
Evalue2.8e-26
Seed ortholog4792.ETI40842
Hectar predicted targeting categoryother localisation
TranscriptId132083
TrackFilteredModels1
ProteinId131761
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131761gene_247Tribonema minus UTEX_B_3156 geneContig_3 822217..822609 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_247_1exon_247_1Tribonema minus UTEX_B_3156 exonContig_3 822217..822609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_247CDS_247Tribonema minus UTEX_B_3156 CDSContig_3 822217..822609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131761Trimin1|131761|gw1.3.67.1Tribonema minus UTEX_B_3156 polypeptideContig_3 822217..822609 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_247 ID=mRNA_247|Name=jgi.p|Trimin1|131761|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_3:822217..822609+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCATCTACGTGCTCGGCCTGCGCCACGGCAAGTACTACGTGGGGCGAAC
GCCGAGGCTGCCCGACCGCCTGAGGGAGCACTACGAGGGGAAGGGGGCGG
CGTGGACGAAGCACTACCCCATGGAGAGGCTTCTCAGCATCAAGTACGCG
AGTCAGTGCGGCGGGGCGGTCAACGGCGCGGTGGAGGAAAAGGAGACAAT
GGAGTGGATGGCGCGATACGGCGTGGATAACGTCAGGGGCGGCACGTACG
CGCAGCTCCAGTACGAGCCGGAGGCCATGAAGGCCATCTGCAAGCAGGTG
TGGGGCAGTGCCGACCTCTGCCTGGAGTGCGGCAGCGGCGAGCACTTCGC
CACCTCCTGCCCCAGCAGGCGCAAGCGCAAGAAGCAGGAGCCC
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protein sequence of jgi.p|Trimin1|131761

>Trimin1|131761|gw1.3.67.1 ID=Trimin1|131761|gw1.3.67.1|Name=jgi.p|Trimin1|131761|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
VIYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYA
SQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQV
WGSADLCLECGSGEHFATSCPSRRKRKKQEP
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mRNA from alignment at Contig_3:822217..822609+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_247 ID=mRNA_247|Name=jgi.p|Trimin1|131761|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_3:822217..822609+ (Tribonema minus UTEX_B_3156 )
GTCATCTACGTGCTCGGCCTGCGCCACGGCAAGTACTACGTGGGGCGAAC GCCGAGGCTGCCCGACCGCCTGAGGGAGCACTACGAGGGGAAGGGGGCGG CGTGGACGAAGCACTACCCCATGGAGAGGCTTCTCAGCATCAAGTACGCG AGTCAGTGCGGCGGGGCGGTCAACGGCGCGGTGGAGGAAAAGGAGACAAT GGAGTGGATGGCGCGATACGGCGTGGATAACGTCAGGGGCGGCACGTACG CGCAGCTCCAGTACGAGCCGGAGGCCATGAAGGCCATCTGCAAGCAGGTG TGGGGCAGTGCCGACCTCTGCCTGGAGTGCGGCAGCGGCGAGCACTTCGC CACCTCCTGCCCCAGCAGGCGCAAGCGCAAGAAGCAGGAGCCC
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Coding sequence (CDS) from alignment at Contig_3:822217..822609+

>mRNA_247 ID=mRNA_247|Name=jgi.p|Trimin1|131761|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_3:822217..822609+ (Tribonema minus UTEX_B_3156 )
GTCATCTACGTGCTCGGCCTGCGCCACGGCAAGTACTACGTGGGGCGAAC
GCCGAGGCTGCCCGACCGCCTGAGGGAGCACTACGAGGGGAAGGGGGCGG
CGTGGACGAAGCACTACCCCATGGAGAGGCTTCTCAGCATCAAGTACGCG
AGTCAGTGCGGCGGGGCGGTCAACGGCGCGGTGGAGGAAAAGGAGACAAT
GGAGTGGATGGCGCGATACGGCGTGGATAACGTCAGGGGCGGCACGTACG
CGCAGCTCCAGTACGAGCCGGAGGCCATGAAGGCCATCTGCAAGCAGGTG
TGGGGCAGTGCCGACCTCTGCCTGGAGTGCGGCAGCGGCGAGCACTTCGC
CACCTCCTGCCCCAGCAGGCGCAAGCGCAAGAAGCAGGAGCCC
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