mRNA_247 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A836CEP9_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP9_9STRA) HSP 1 Score: 280 bits (716), Expect = 8.710e-96 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 Query: 1 VIYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRRKRKKQEP 393 VIYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRRKRKKQEP Sbjct: 1 VIYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRRKRKKQEP 131
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A329SFP1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFP1_9STRA) HSP 1 Score: 111 bits (278), Expect = 9.640e-27 Identity = 55/125 (44.00%), Postives = 80/125 (64.00%), Query Frame = 1 Query: 4 IYVLGLRHGKYYVGRTPR--LPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRR 372 IYVL L +GKYYVG+T R + +RL EH GKG+AWT+ + R L I ++ + E+K T +WM +YGV+NVRGG+Y+++ + P + A+ +Q+ GS D C CGS HFA CP ++ Sbjct: 96 IYVLALANGKYYVGKTARANVDERLEEHKNGKGSAWTR---LHRPLRIAEITRNADPFD---EDKFTKKWMLKYGVENVRGGSYSRVNFTPGELDAVLQQLRGSTDQCFVCGSKNHFAAKCPDKK 214
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A6C0K290_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K290_9ZZZZ) HSP 1 Score: 106 bits (265), Expect = 3.770e-26 Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1 Query: 4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSR 369 IYVL L+ GKYYVG++ + R ++H GKG+AWT Y LL +C V+ E+K E+M++YG++NVRGGTY Q+ + M+A+ +++ G D C ECG HFA CP++ Sbjct: 6 IYVLKLQGGKYYVGKSTDVIGRYQQHLSGKGSAWTNKYKPISLL------ECKSDVSPFEEDKVVKEYMSKYGIENVRGGTYTQMTLDAVQMEALNREMRGGTDACHECGQKGHFAKYCPNK 121
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A6C0LCR0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LCR0_9ZZZZ) HSP 1 Score: 105 bits (261), Expect = 7.530e-26 Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 1 Query: 4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRRKRKKQE 390 +YVL L++ K+YVG++ +P R +EH EGKG++WTK + R++ +K ++ E T ++M +YG+ NVRGG+Y Q++ PE I K+ G+AD C +C HFA C K K +E Sbjct: 5 VYVLELKNNKWYVGKSLNVPKRFQEHLEGKGSSWTKKHKPVRIIEVKLI------ISQHDENNLTKDYMKKYGIQNVRGGSYTQIELSPEITDVIQKEFNGNADKCYKCQKYGHFANKCTEETKEKSEE 127
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: W2QEQ1_PHYPN (Uncharacterized protein (Fragment) n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QEQ1_PHYPN) HSP 1 Score: 107 bits (266), Expect = 2.630e-25 Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 1 Query: 4 IYVLGLRHGKYYVGRTPR--LPDRLREHYEGKGAAWTKHY-PMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRR 372 IYVL L GK+YVG+T R + +RL EH GKG+AWT+ Y P+ +I+ + E+K T +WM +YG++NVRGG+Y+++ P + A+ +Q+ GS D C CGS HFA CP ++ Sbjct: 86 IYVLALVEGKFYVGKTARANVDERLEEHKSGKGSAWTRLYRPLRIAETIRNSDPFD-------EDKFTKKWMLKYGIENVRGGSYSRVDLTPGDIDALSRQLRGSTDQCFVCGSKSHFAAQCPDKK 204
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A0P0YND3_9PHYC (Uncharacterized protein n=1 Tax=Yellowstone lake phycodnavirus 3 TaxID=1586715 RepID=A0A0P0YND3_9PHYC) HSP 1 Score: 103 bits (256), Expect = 3.210e-25 Identity = 43/122 (35.25%), Postives = 76/122 (62.30%), Query Frame = 1 Query: 4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSR 369 +Y L L GKYY+G++ L RL H+ G G+AWT+ Y ++++ ++ V+ E+K T E+M +YG+DNVRGG Y Q++ E+ +++ +++ G+ D+C +C H+A+ C +R Sbjct: 5 VYALKLAGGKYYIGKSDNLDQRLESHFTGSGSAWTREYKPQKVIEVREN------VSRFEEDKMTKEYMEKYGIDNVRGGAYTQVELPDESRESLQREIRGTTDVCFKCNRPGHWASQCYAR 120
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A6C0JUE5_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JUE5_9ZZZZ) HSP 1 Score: 102 bits (254), Expect = 1.350e-24 Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 1 Query: 4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHY-PMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSC 360 IY+L L++ KYY+G+T + +R ++H G G++WTK Y P+ + IK SQ E+K E+MA+YG++NVRGGTY ++ + ++ + K++W S +LC CG HF C Sbjct: 4 IYILKLKNNKYYIGKTQDVENRFKQHINGVGSSWTKKYKPISIIKQIKSTSQFD-------EDKYVKEYMAKYGIENVRGGTYTSIELDDISLFQLQKELWHSKNLCTRCGRNTHFIKDC 116
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A7S1KRU8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KRU8_9EUKA) HSP 1 Score: 102 bits (254), Expect = 4.120e-24 Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 1 Query: 4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWT-KHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPSRRK 375 IYVL L++ KYYVG+T L RL H+EG+G+AWT KH P L +++ + + E+K T+E+M R GVDNVRGG+Y Q+ K I +Q+ D C C HF CPS +K Sbjct: 63 IYVLQLQNDKYYVGKTQNLKGRLDAHFEGRGSAWTAKHRP----LHVQHCFEANSNSHSFEEQKCTLEYMHRKGVDNVRGGSYCQVSLSRGVRKEILRQIDSMCDHCFLCHEAGHFVRDCPSSKK 183
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A6G6XN51_9PHYC (Uncharacterized protein n=1 Tax=Dishui Lake phycodnavirus 2 TaxID=2704071 RepID=A0A6G6XN51_9PHYC) HSP 1 Score: 99.8 bits (247), Expect = 9.050e-24 Identity = 47/121 (38.84%), Postives = 71/121 (58.68%), Query Frame = 1 Query: 4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSCPS 366 IYVL L + KYY+GRT L +R+ HY G+G+ WT+ Y + I + E+K T+++M +YG+DNVRGG++ +L K+I + ++G+ D C CG+ HFA CPS Sbjct: 3 IYVLKLENEKYYIGRTNDLKNRVEVHYRGEGSLWTQKYRPTSTIEIIETD------DPYDEDKVTLKYMEKYGIDNVRGGSFVRLVLSGYEKKSIQQMIYGNTDNCFRCGNSGHFAIECPS 117
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Match: A0A6C0LCT8_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LCT8_9ZZZZ) HSP 1 Score: 100 bits (248), Expect = 1.220e-23 Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1 Query: 4 IYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHY-PMERLLSIKYASQCGGAVNGAVEEKETMEWMARYGVDNVRGGTYAQLQYEPEAMKAICKQVWGSADLCLECGSGEHFATSC 360 IY+L L+ GKYY+G+T + R EH G G+ WTK Y P+ + S+ S E+K E+MA+YG+DNVRGGTY+ + + + + K++ S +LC CG G HF C Sbjct: 4 IYILRLKEGKYYIGKTKNVDKRWNEHITGDGSGWTKKYKPISLIKSVISTSYFD-------EDKYVKEYMAKYGIDNVRGGTYSNIDLDDNTISVLEKEIRHSKNLCTRCGRGTHFIKDC 116 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131761 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_247 ID=mRNA_247|Name=jgi.p|Trimin1|131761|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_3:822217..822609+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTCATCTACGTGCTCGGCCTGCGCCACGGCAAGTACTACGTGGGGCGAACback to top protein sequence of jgi.p|Trimin1|131761 >Trimin1|131761|gw1.3.67.1 ID=Trimin1|131761|gw1.3.67.1|Name=jgi.p|Trimin1|131761|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp VIYVLGLRHGKYYVGRTPRLPDRLREHYEGKGAAWTKHYPMERLLSIKYAback to top mRNA from alignment at Contig_3:822217..822609+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_247 ID=mRNA_247|Name=jgi.p|Trimin1|131761|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_3:822217..822609+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:822217..822609+ >mRNA_247 ID=mRNA_247|Name=jgi.p|Trimin1|131761|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_3:822217..822609+ (Tribonema minus UTEX_B_3156 )back to top |