mRNA_2280 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133876
Unique NamemRNA_2280
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A836CBR2_9STRA (Snare associated Golgi protein-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBR2_9STRA)

HSP 1 Score: 269 bits (688), Expect = 4.650e-91
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1
Query:    1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGGG 435
            LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGGG
Sbjct:    1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGGG 145          
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A835ZF34_9STRA (Snare associated Golgi protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF34_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.570e-66
Identity = 109/145 (75.17%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGGG 435
            LYFG +YV+AEVLAIPALPLTASSGYLFGL GGT VV  SATIAA I FLLGRTFLR WVE  L  +A+F AID+A+ REGF+IILLLRLSP+ PF++SNYLYG T+VPFWEYL AS+LGFLPGTIAYVYGG +LG+ +D G GG
Sbjct:   11 LYFGALYVIAEVLAIPALPLTASSGYLFGLVGGTTVVICSATIAAGISFLLGRTFLRKWVEELLGDNAKFKAIDSAIGREGFKIILLLRLSPIFPFAISNYLYGITSVPFWEYLGASMLGFLPGTIAYVYGGGQLGSLVDGGDGG 155          
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A6H5L0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C0_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.000e-50
Identity = 94/143 (65.73%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    4 YFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGG 432
            YFGL+YV+AEVL IPA+PLTA++G+LFG AGGTAVV  SATIAAAI F LGRT LR  VEG L  + +F A+D A+A+EGF++ILLLRLSP+ PF+LSNYLYG T+V F EY+  ++LGF PGT+AYVYGG  LG  +  GGG
Sbjct:  243 YFGLLYVLAEVLIIPAIPLTAAAGFLFGAAGGTAVVLTSATIAAAISFQLGRTLLRQQVEGLLEENPKFRALDKAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFLEYMMGTLLGFFPGTLAYVYGGT-LGKVVTDGGG 384          
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: F0Y8Y3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8Y3_AURAN)

HSP 1 Score: 166 bits (421), Expect = 2.550e-50
Identity = 89/133 (66.92%), Postives = 103/133 (77.44%), Query Frame = 1
Query:    1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGD 399
            LYF +VYV+AEVLA+PA+PLTAS+GYLFG   GTAVV  SATIAA   FL+GR+ LR WVEG      +F AID AVA EGF+IILLLRLSP+ PF+LSNY YG TAV F  YLAA++LGF PGT  YVY G+
Sbjct:   10 LYFSVVYVLAEVLALPAVPLTASAGYLFGAVEGTAVVLFSATIAAGASFLIGRSLLRKWVEGIAAESEQFQAIDRAVAAEGFKIILLLRLSPIFPFALSNYFYGLTAVEFGPYLAATLLGFAPGTFLYVYSGE 142          
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A7S2K1V4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1V4_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.900e-49
Identity = 89/139 (64.03%), Postives = 111/139 (79.86%), Query Frame = 1
Query:    1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAAL 417
            LYFG+ Y +AE+LAIPA PLT S+GYLFGL GGT +V +SA+IAA+I FL+GRT LR +VEG L    +F A+D A+ +EGF++ILLLRLSPL PF+LSNYLYG T+V F EY   ++LGFLPGT+AYVY GD +G AL
Sbjct:  172 LYFGIFYTIAEILAIPAFPLTCSAGYLFGLQGGTTIVLLSASIAASISFLIGRTALRSYVEGLLEKYPKFKAMDKAIGKEGFKLILLLRLSPLFPFALSNYLYGVTSVRFVEYFWGTLLGFLPGTMAYVYSGD-VGKAL 309          
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A7S1FUG6_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUG6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.020e-49
Identity = 88/144 (61.11%), Postives = 115/144 (79.86%), Query Frame = 1
Query:    1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAAL--DAG 426
            LYFG++Y +AE+LAIPA+PLTAS+GYLFG+  GTAVV ++A++AA++ FLLGR  LRG VE  L  + RF A+DAA+ +EGF+++LLLRLSP+ PF+LSNYLYG T+V FW Y   ++LGF PGT+AYVY G+  G AL  DAG
Sbjct:   44 LYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGE-FGKALTMDAG 186          
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A6U4D339_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D339_9STRA)

HSP 1 Score: 169 bits (427), Expect = 8.600e-49
Identity = 88/145 (60.69%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    4 YFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGG----DRLGAALDAG 426
            YF +VY +AE++A+PA+PLTAS+GYLFG   GT+VV +SATIAA++ FLL RTFLRG V+G   G+A++ AID AV +EGF+++LLLRLSPLLPF+LSNYLYG +AV FW Y   +  GF+PGTIAYVY G    D + AA + G
Sbjct:  155 YFAVVYTLAEIVAVPAVPLTASAGYLFGAVKGTSVVLLSATIAASVSFLLARTFLRGPVQGIAEGNAKWRAIDKAVGKEGFKLVLLLRLSPLLPFALSNYLYGLSAVDFWGYFWGTFFGFMPGTIAYVYSGQVGRDVVNAAAEGG 299          
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A7S4A122_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A122_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.460e-48
Identity = 91/142 (64.08%), Postives = 105/142 (73.94%), Query Frame = 1
Query:    4 YFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGG 429
            YF  VYVVAEVLA+PA+PLTAS+GYLFG   GTA+V  SATIAA + FL+GR+ LR WVE      A+F AID AVA EGF+IILLLRLSP+ PF+LSNY YG TAV F  YLAA++LGF PGT  YVY G+    A  A G
Sbjct:  177 YFAAVYVVAEVLALPAVPLTASAGYLFGAVEGTAIVLFSATIAAGVSFLIGRSLLRSWVERVAGESAQFQAIDRAVASEGFKIILLLRLSPIFPFALSNYFYGLTAVEFGPYLAATLLGFAPGTFLYVYSGEVASVAAGAAG 318          
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A7S4I716_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I716_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.740e-48
Identity = 87/139 (62.59%), Postives = 110/139 (79.14%), Query Frame = 1
Query:    1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAAL 417
            LYFG++Y VAE+LAIPA+PLTAS+GYLFG+  GTAVV  SA+IAAAI F++GRT LR +VE  L    +F  ID A+ REGF+++LLLRLSP+ PF+LSNYLYG T++ FW Y   ++LGF PGTIAYVY G+ +G AL
Sbjct:  199 LYFGIIYTVAEILAIPAIPLTASAGYLFGVTEGTAVVLASASIAAAISFIIGRTLLRTYVESVLEDYPKFKKIDKAIGREGFKLMLLLRLSPIFPFALSNYLYGATSIGFWPYFFGTMLGFTPGTIAYVYTGE-IGKAL 336          
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A7S1FUT1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUT1_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.150e-47
Identity = 88/144 (61.11%), Postives = 115/144 (79.86%), Query Frame = 1
Query:    1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAAL--DAG 426
            LYFG++Y +AE+LAIPA+PLTAS+GYLFG+  GTAVV ++A++AA++ FLLGR  LRG VE  L  + RF A+DAA+ +EGF+++LLLRLSP+ PF+LSNYLYG T+V FW Y   ++LGF PGT+AYVY G+  G AL  DAG
Sbjct:  182 LYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGE-FGKALTMDAG 324          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBR2_9STRA4.650e-91100.00Snare associated Golgi protein-domain-containing p... [more]
A0A835ZF34_9STRA1.570e-6675.17Snare associated Golgi protein-domain-containing p... [more]
A0A6H5L0C0_9PHAE2.000e-5065.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y8Y3_AURAN2.550e-5066.92Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2K1V4_9STRA2.900e-4964.03Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S1FUG6_9STRA3.020e-4961.11Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6U4D339_9STRA8.600e-4960.69Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4A122_9STRA2.460e-4864.08Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S4I716_9STRA3.740e-4862.59Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1FUT1_9STRA1.150e-4761.11Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:330594..331028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133876|gw1.5.52.1
Descriptioncanonical Wnt signaling pathway involved in osteoblast differentiation
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0398@1|root,KOG3140@2759|Eukaryota
Evalue4.18e-51
Seed ortholog44056.XP_009037153.1
Hectar predicted targeting categorysignal peptide
TranscriptId134198
TrackFilteredModels1
ProteinId133876
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133876gene_2280Tribonema minus UTEX_B_3156 geneContig_5 330594..331028 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2280_1exon_2280_1Tribonema minus UTEX_B_3156 exonContig_5 330594..331028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2280CDS_2280Tribonema minus UTEX_B_3156 CDSContig_5 330594..331028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133876Trimin1|133876|gw1.5.52.1Tribonema minus UTEX_B_3156 polypeptideContig_5 330594..331028 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2280 ID=mRNA_2280|Name=jgi.p|Trimin1|133876|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_5:330594..331028+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCTACTTTGGCCTCGTCTACGTCGTCGCGGAGGTCCTCGCGATCCCCGC
GCTGCCGCTCACCGCGAGCAGCGGCTACCTCTTCGGCCTTGCGGGCGGGA
CCGCCGTCGTCGCCATCTCCGCGACCATCGCCGCCGCCATCGGCTTCCTC
CTCGGCCGCACCTTCCTGCGCGGCTGGGTGGAGGGCGCGCTGCGCGGCGA
CGCGCGCTTCGCCGCGATAGACGCCGCCGTCGCGCGCGAGGGCTTCCGCA
TCATCCTCCTCCTGCGCCTGTCGCCGCTCCTCCCCTTCTCCCTCTCCAAC
TACCTGTACGGGACGACCGCCGTCCCCTTCTGGGAGTATCTCGCCGCCAG
CATTCTCGGCTTCCTCCCCGGCACCATCGCCTATGTCTACGGCGGCGACA
GGCTGGGGGCAGCGCTTGACGCCGGCGGCGGCGGC
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protein sequence of jgi.p|Trimin1|133876

>Trimin1|133876|gw1.5.52.1 ID=Trimin1|133876|gw1.5.52.1|Name=jgi.p|Trimin1|133876|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp
LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFL
LGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSN
YLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGGG
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mRNA from alignment at Contig_5:330594..331028+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2280 ID=mRNA_2280|Name=jgi.p|Trimin1|133876|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_5:330594..331028+ (Tribonema minus UTEX_B_3156 )
CTCTACTTTGGCCTCGTCTACGTCGTCGCGGAGGTCCTCGCGATCCCCGC GCTGCCGCTCACCGCGAGCAGCGGCTACCTCTTCGGCCTTGCGGGCGGGA CCGCCGTCGTCGCCATCTCCGCGACCATCGCCGCCGCCATCGGCTTCCTC CTCGGCCGCACCTTCCTGCGCGGCTGGGTGGAGGGCGCGCTGCGCGGCGA CGCGCGCTTCGCCGCGATAGACGCCGCCGTCGCGCGCGAGGGCTTCCGCA TCATCCTCCTCCTGCGCCTGTCGCCGCTCCTCCCCTTCTCCCTCTCCAAC TACCTGTACGGGACGACCGCCGTCCCCTTCTGGGAGTATCTCGCCGCCAG CATTCTCGGCTTCCTCCCCGGCACCATCGCCTATGTCTACGGCGGCGACA GGCTGGGGGCAGCGCTTGACGCCGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at Contig_5:330594..331028+

>mRNA_2280 ID=mRNA_2280|Name=jgi.p|Trimin1|133876|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=435bp|location=Sequence derived from alignment at Contig_5:330594..331028+ (Tribonema minus UTEX_B_3156 )
CTCTACTTTGGCCTCGTCTACGTCGTCGCGGAGGTCCTCGCGATCCCCGC
GCTGCCGCTCACCGCGAGCAGCGGCTACCTCTTCGGCCTTGCGGGCGGGA
CCGCCGTCGTCGCCATCTCCGCGACCATCGCCGCCGCCATCGGCTTCCTC
CTCGGCCGCACCTTCCTGCGCGGCTGGGTGGAGGGCGCGCTGCGCGGCGA
CGCGCGCTTCGCCGCGATAGACGCCGCCGTCGCGCGCGAGGGCTTCCGCA
TCATCCTCCTCCTGCGCCTGTCGCCGCTCCTCCCCTTCTCCCTCTCCAAC
TACCTGTACGGGACGACCGCCGTCCCCTTCTGGGAGTATCTCGCCGCCAG
CATTCTCGGCTTCCTCCCCGGCACCATCGCCTATGTCTACGGCGGCGACA
GGCTGGGGGCAGCGCTTGACGCCGGCGGCGGCGGC
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