mRNA_2280 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A836CBR2_9STRA (Snare associated Golgi protein-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBR2_9STRA) HSP 1 Score: 269 bits (688), Expect = 4.650e-91 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 Query: 1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGGG 435 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGGG Sbjct: 1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGGG 145
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A835ZF34_9STRA (Snare associated Golgi protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF34_9STRA) HSP 1 Score: 209 bits (532), Expect = 1.570e-66 Identity = 109/145 (75.17%), Postives = 124/145 (85.52%), Query Frame = 1 Query: 1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGGG 435 LYFG +YV+AEVLAIPALPLTASSGYLFGL GGT VV SATIAA I FLLGRTFLR WVE L +A+F AID+A+ REGF+IILLLRLSP+ PF++SNYLYG T+VPFWEYL AS+LGFLPGTIAYVYGG +LG+ +D G GG Sbjct: 11 LYFGALYVIAEVLAIPALPLTASSGYLFGLVGGTTVVICSATIAAGISFLLGRTFLRKWVEELLGDNAKFKAIDSAIGREGFKIILLLRLSPIFPFAISNYLYGITSVPFWEYLGASMLGFLPGTIAYVYGGGQLGSLVDGGDGG 155
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A6H5L0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C0_9PHAE) HSP 1 Score: 175 bits (443), Expect = 2.000e-50 Identity = 94/143 (65.73%), Postives = 115/143 (80.42%), Query Frame = 1 Query: 4 YFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGGG 432 YFGL+YV+AEVL IPA+PLTA++G+LFG AGGTAVV SATIAAAI F LGRT LR VEG L + +F A+D A+A+EGF++ILLLRLSP+ PF+LSNYLYG T+V F EY+ ++LGF PGT+AYVYGG LG + GGG Sbjct: 243 YFGLLYVLAEVLIIPAIPLTAAAGFLFGAAGGTAVVLTSATIAAAISFQLGRTLLRQQVEGLLEENPKFRALDKAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFLEYMMGTLLGFFPGTLAYVYGGT-LGKVVTDGGG 384
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: F0Y8Y3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8Y3_AURAN) HSP 1 Score: 166 bits (421), Expect = 2.550e-50 Identity = 89/133 (66.92%), Postives = 103/133 (77.44%), Query Frame = 1 Query: 1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGD 399 LYF +VYV+AEVLA+PA+PLTAS+GYLFG GTAVV SATIAA FL+GR+ LR WVEG +F AID AVA EGF+IILLLRLSP+ PF+LSNY YG TAV F YLAA++LGF PGT YVY G+ Sbjct: 10 LYFSVVYVLAEVLALPAVPLTASAGYLFGAVEGTAVVLFSATIAAGASFLIGRSLLRKWVEGIAAESEQFQAIDRAVAAEGFKIILLLRLSPIFPFALSNYFYGLTAVEFGPYLAATLLGFAPGTFLYVYSGE 142
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A7S2K1V4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1V4_9STRA) HSP 1 Score: 169 bits (429), Expect = 2.900e-49 Identity = 89/139 (64.03%), Postives = 111/139 (79.86%), Query Frame = 1 Query: 1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAAL 417 LYFG+ Y +AE+LAIPA PLT S+GYLFGL GGT +V +SA+IAA+I FL+GRT LR +VEG L +F A+D A+ +EGF++ILLLRLSPL PF+LSNYLYG T+V F EY ++LGFLPGT+AYVY GD +G AL Sbjct: 172 LYFGIFYTIAEILAIPAFPLTCSAGYLFGLQGGTTIVLLSASIAASISFLIGRTALRSYVEGLLEKYPKFKAMDKAIGKEGFKLILLLRLSPLFPFALSNYLYGVTSVRFVEYFWGTLLGFLPGTMAYVYSGD-VGKAL 309
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A7S1FUG6_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUG6_9STRA) HSP 1 Score: 166 bits (421), Expect = 3.020e-49 Identity = 88/144 (61.11%), Postives = 115/144 (79.86%), Query Frame = 1 Query: 1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAAL--DAG 426 LYFG++Y +AE+LAIPA+PLTAS+GYLFG+ GTAVV ++A++AA++ FLLGR LRG VE L + RF A+DAA+ +EGF+++LLLRLSP+ PF+LSNYLYG T+V FW Y ++LGF PGT+AYVY G+ G AL DAG Sbjct: 44 LYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGE-FGKALTMDAG 186
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A6U4D339_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D339_9STRA) HSP 1 Score: 169 bits (427), Expect = 8.600e-49 Identity = 88/145 (60.69%), Postives = 113/145 (77.93%), Query Frame = 1 Query: 4 YFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGG----DRLGAALDAG 426 YF +VY +AE++A+PA+PLTAS+GYLFG GT+VV +SATIAA++ FLL RTFLRG V+G G+A++ AID AV +EGF+++LLLRLSPLLPF+LSNYLYG +AV FW Y + GF+PGTIAYVY G D + AA + G Sbjct: 155 YFAVVYTLAEIVAVPAVPLTASAGYLFGAVKGTSVVLLSATIAASVSFLLARTFLRGPVQGIAEGNAKWRAIDKAVGKEGFKLVLLLRLSPLLPFALSNYLYGLSAVDFWGYFWGTFFGFMPGTIAYVYSGQVGRDVVNAAAEGG 299
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A7S4A122_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A122_9STRA) HSP 1 Score: 168 bits (425), Expect = 2.460e-48 Identity = 91/142 (64.08%), Postives = 105/142 (73.94%), Query Frame = 1 Query: 4 YFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAALDAGG 429 YF VYVVAEVLA+PA+PLTAS+GYLFG GTA+V SATIAA + FL+GR+ LR WVE A+F AID AVA EGF+IILLLRLSP+ PF+LSNY YG TAV F YLAA++LGF PGT YVY G+ A A G Sbjct: 177 YFAAVYVVAEVLALPAVPLTASAGYLFGAVEGTAIVLFSATIAAGVSFLIGRSLLRSWVERVAGESAQFQAIDRAVASEGFKIILLLRLSPIFPFALSNYFYGLTAVEFGPYLAATLLGFAPGTFLYVYSGEVASVAAGAAG 318
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A7S4I716_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I716_9STRA) HSP 1 Score: 168 bits (425), Expect = 3.740e-48 Identity = 87/139 (62.59%), Postives = 110/139 (79.14%), Query Frame = 1 Query: 1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAAL 417 LYFG++Y VAE+LAIPA+PLTAS+GYLFG+ GTAVV SA+IAAAI F++GRT LR +VE L +F ID A+ REGF+++LLLRLSP+ PF+LSNYLYG T++ FW Y ++LGF PGTIAYVY G+ +G AL Sbjct: 199 LYFGIIYTVAEILAIPAIPLTASAGYLFGVTEGTAVVLASASIAAAISFIIGRTLLRTYVESVLEDYPKFKKIDKAIGREGFKLMLLLRLSPIFPFALSNYLYGATSIGFWPYFFGTMLGFTPGTIAYVYTGE-IGKAL 336
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Match: A0A7S1FUT1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUT1_9STRA) HSP 1 Score: 166 bits (421), Expect = 1.150e-47 Identity = 88/144 (61.11%), Postives = 115/144 (79.86%), Query Frame = 1 Query: 1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLRGWVEGALRGDARFAAIDAAVAREGFRIILLLRLSPLLPFSLSNYLYGTTAVPFWEYLAASILGFLPGTIAYVYGGDRLGAAL--DAG 426 LYFG++Y +AE+LAIPA+PLTAS+GYLFG+ GTAVV ++A++AA++ FLLGR LRG VE L + RF A+DAA+ +EGF+++LLLRLSP+ PF+LSNYLYG T+V FW Y ++LGF PGT+AYVY G+ G AL DAG Sbjct: 182 LYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGE-FGKALTMDAG 324 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133876 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2280 ID=mRNA_2280|Name=jgi.p|Trimin1|133876|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_5:330594..331028+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCTACTTTGGCCTCGTCTACGTCGTCGCGGAGGTCCTCGCGATCCCCGCback to top protein sequence of jgi.p|Trimin1|133876 >Trimin1|133876|gw1.5.52.1 ID=Trimin1|133876|gw1.5.52.1|Name=jgi.p|Trimin1|133876|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLback to top mRNA from alignment at Contig_5:330594..331028+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2280 ID=mRNA_2280|Name=jgi.p|Trimin1|133876|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_5:330594..331028+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_5:330594..331028+ >mRNA_2280 ID=mRNA_2280|Name=jgi.p|Trimin1|133876|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=435bp|location=Sequence derived from alignment at Contig_5:330594..331028+ (Tribonema minus UTEX_B_3156 )back to top |