mRNA_2173 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137483
Unique NamemRNA_2173
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A836CA06_9STRA (Ribosomal protein L18e/L15P (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA06_9STRA)

HSP 1 Score: 485 bits (1249), Expect = 5.060e-173
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1
Query:    1 HVPLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLFGRVTSEVRPEGEDEEQE 759
            HVPLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLFGRVTSEVRPEGEDEEQE
Sbjct:    1 HVPLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLFGRVTSEVRPEGEDEEQE 253          
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: D7G183_ECTSI (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G183_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 2.340e-83
Identity = 153/265 (57.74%), Postives = 189/265 (71.32%), Query Frame = 1
Query:    7 PLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQT-------------ADGDAP-----MARAVPESAYAA----PLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLFGRVTSEVRP 735
            PL+LN L PN GA   ++RVGRG GSG GKT  +G+KG++AR+G +  +GFEGGQTP HRR+PKRGFKNGAD SF+ VS+D+++ Y+AMGRLR   P       +++MKDLQDAG++  IKFG++LV G ++              A GDA      +ARA  E+   A    P+HLEVS ASAGAI AVEA+GGTVTCAHFNRLALRALLKP KF    LPRRARPPPRLM  FL   +RGYL+P+VQ+RNL+LFG  T+E RP
Sbjct:   48 PLRLNNLAPNDGARRDRKRVGRGNGSGTGKTCGKGHKGSKARKG-TKRIGFEGGQTPFHRRIPKRGFKNGADESFETVSVDRIYMYIAMGRLR---PNDAC---LISMKDLQDAGIVQDIKFGVRLVAGAKKNSVLGHNSPHRLTGATGDATGAENEVARAASEATKGAKSLPPVHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEE--LPRRARPPPRLMPFFLDHGRRGYLAPDVQMRNLKLFGAPTTEPRP 303          
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A4D9D510_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D510_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.160e-61
Identity = 134/259 (51.74%), Postives = 156/259 (60.23%), Query Frame = 1
Query:   10 LKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVI--GRIKFGLKLV--GGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKF-APGL-----------LPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLF-GRVTSEVRP 735
            L L+ L  NPGA  +++RVGRGIGSG GKTS RG  G + R   ++P GFEGGQTP+HRRLPK GFKN        + +  V  ++ MGRL VP        R++TMKDL DAG+    R+K G+KL+  GG                      P H+EVS AS GAI AVE  GGTVTC HFNRLALRALLKP  F  P L           LPRRARPPPRLM  +L  D+RGYLSPEVQ RN  LF G+VTSE  P
Sbjct:   19 LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLFVGTVQNWIDMGRLVVPAD------RLMTMKDLVDAGIFKANRVKHGIKLLARGGEH-----------------VHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPVLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKGLFNGQVTSEEIP 254          
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: W7U3I7_9STRA (Ribosomal protein L18e/L15P n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3I7_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.400e-59
Identity = 131/259 (50.58%), Postives = 154/259 (59.46%), Query Frame = 1
Query:   10 LKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVI--GRIKFGLKLV--GGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLL------------PRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLF-GRVTSEVRP 735
            L L+ L  NPGA  +++RVGRGIGSG GKTS RG  G + R   ++P GFEGGQTP+HRRLPK GFKN        + +  V  ++ MGRL VP        R++TMKDL DAG+    R+K G+KL+  GG                      P H+EVS AS GAI AVE  GGTVTC HFNRLALRALLKP  F   +L            PRRARPPPRLM  +L  D+RGYLSPEVQ RN  LF G+V SE  P
Sbjct:  109 LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPAD------RLMTMKDLVDAGIFKANRVKHGIKLLARGGEH-----------------VHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLFNGQVISEEIP 344          
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A8J2SDD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDD0_9STRA)

HSP 1 Score: 197 bits (500), Expect = 3.400e-59
Identity = 126/237 (53.16%), Postives = 160/237 (67.51%), Query Frame = 1
Query:    7 PLKLNTLVPNPGAVSQ-KRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIK---FGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRL 705
            P+ LN L PNPG+  + K RVGRGIGSG+GKT+ RG+KGT+ARQGGSV  GF GGQTPLH+ LPK GF +  + +FD+V++  + +++  GRL     EP +   MLTM+DL  +G++  +K    G+KL+G                 E    + +H+EVS ASA AI AVE  GGTVTCAH+NRLALRALLKPHKF    +PRRARPPPRLM  ++S +KRG  SP VQLRN RL
Sbjct:   27 PMALNDLAPNPGSNKRPKIRVGRGIGSGKGKTAGRGHKGTKARQGGSVRPGFAGGQTPLHKALPKVGFTSRRE-AFDVVNVGSLQKWIENGRL-----EP-SDTEMLTMRDLNTSGLV-NLKGSTAGVKLLG-----------------EGEITSSVHIEVSRASASAIKAVEDAGGTVTCAHYNRLALRALLKPHKFEQ--MPRRARPPPRLMRYYVSDEKRGEYSPLVQLRNRRL 236          
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A6U3R8U6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R8U6_9STRA)

HSP 1 Score: 196 bits (499), Expect = 3.500e-58
Identity = 120/233 (51.50%), Postives = 152/233 (65.24%), Query Frame = 1
Query:   10 LKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGV--IGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLR 702
            L LN +  NPGAV +KRRVGRGIGS +GKT  RG+KG +AR GG V   FEGGQT  ++RLPKRGFKN        +++  +  +V MGRLRVP   P  PP  +TMKDL DAGV  I  +K G+KL+   ++T                 APL +E+S AS+ AI A+E  GG +   H+NRLAL+ALLKPH+F   +LP+RA PPP+LM  + S DKRGYLSPEVQ+R L+
Sbjct:   91 LNLNNIADNPGAVKKKRRVGRGIGSSKGKTCGRGHKGQKARAGGGVHPTFEGGQTKFYKRLPKRGFKNKHAEPMLPINVGTLQNFVDMGRLRVP--GPNDPP--ITMKDLVDAGVTKINAVKHGVKLLAKGKET---------------LTAPLKIEISRASSEAIQAIEKAGGQIMTVHYNRLALKALLKPHRF--DILPKRASPPPKLMEYYTSYDKRGYLSPEVQMRKLK 302          
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A7S3XNS7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNS7_HETAK)

HSP 1 Score: 193 bits (491), Expect = 1.320e-57
Identity = 117/235 (49.79%), Postives = 153/235 (65.11%), Query Frame = 1
Query:    4 VPLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIG---RIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNL 699
            +PL+LN L  NPGA  Q++RVGRGIGSG GKT  +G+KG +AR GGS+  GFEGGQTP++R  PK GF N        +++  +  +  MGR+R+P P+   PP  LTMKDL D+G++     +K G+KL+               A  +    AP+HLEV GAS  AIAAVEARGG VT  ++NRL LRALLKP KF    +P+RA PPP+LM  +L  ++RGYL+PE+QLR L
Sbjct:   42 LPLRLNNLADNPGATKQRKRVGRGIGSGLGKTCGKGHKGQKARAGGSIRRGFEGGQTPIYRTTPKSGFTNKFKIERVPLNLGDLQMWADMGRIRLPGPD--EPP--LTMKDLTDSGIVNFTKTLKKGVKLL---------------AKGKELLRAPVHLEVMGASREAIAAVEARGGAVTARYYNRLGLRALLKPDKFEAKGVPKRAAPPPKLMPFYLDPERRGYLAPEMQLRRL 257          
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A7S1BS99_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BS99_9STRA)

HSP 1 Score: 194 bits (492), Expect = 7.770e-57
Identity = 114/231 (49.35%), Postives = 154/231 (66.67%), Query Frame = 1
Query:   16 LNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNG--ADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGV--IGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRN 696
            LN +  NPGAV +KRRVGRG GS +GKTS RG+KG ++R GG +   FEGGQTP+H+R+PKRGF N   AD    I ++ K+ +Y+ MGRL  P   P      + M DL ++G+  + +IK G KL+ G++     D P+  A+         ++E+S ASA AI A+E  GGTVT  H+NRLAL+ALLKPH+F   ++PRRA PPP+L+  + S +KRGYLSPEVQ+RN
Sbjct:  111 LNNIADNPGAVKKKRRVGRGTGSSKGKTSGRGHKGQKSRSGGKISPFFEGGQTPMHKRIPKRGFNNKKHADPMIPI-AVAKIQDYIDMGRLIPPTTRP------INMLDLVESGLTKMSKIKHGCKLLSGKKLPPGADPPVRSAI---------NIEISRASASAIRAIEEAGGTVTTVHYNRLALKALLKPHRF--DVIPRRAAPPPKLLPYYTSYEKRGYLSPEVQIRN 323          
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A7S1Z8D1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8D1_TRICV)

HSP 1 Score: 185 bits (469), Expect = 2.780e-54
Identity = 116/233 (49.79%), Postives = 147/233 (63.09%), Query Frame = 1
Query:   10 LKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGR--IKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLR 702
            L LN +  NPG+  ++RR+GRGIG  +GKT  RG+KG RAR G +V   FEGGQTPLH+RLPKRG  N   T    +++  + +YV MGRL VP P+  A P  LT+ DL DAG++ +  +K G+KL+   R+                   PL LEVS AS  AI AVE  GG +   H NRLAL+ALLKPHKF   ++PRRA PPP+LM  + S + RGYLSPEVQ+R LR
Sbjct:   47 LTLNNISDNPGSRKKRRRIGRGIGCSKGKTCGRGHKGQRARAGKNVRPTFEGGQTPLHKRLPKRGMTNVHATPMTPINVGTLQDYVDMGRLAVPSPD--ASP--LTITDLVDAGIVKKSSVKHGVKLLAKGRERLQS---------------PLRLEVSRASRSAIDAVEEAGGEIATVHLNRLALKALLKPHKF--DVIPRRALPPPKLMPYYTSYENRGYLSPEVQMRQLR 258          
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A7S2V348_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V348_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.940e-54
Identity = 113/235 (48.09%), Postives = 154/235 (65.53%), Query Frame = 1
Query:    7 PLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQ---GGSVPLGFEGGQTPLHRRLPKRGFKNGA-DTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNL 699
            PL LN L PNPG+  Q+RRVGRGIGSGRGKT  RG+KG + R+   GG    GF GGQTPLHR LPKRGF N       + +++ ++  ++ MGRL   +P+P  P   +T++D++++G+I RIK G+KL+               A  +     PL++EV+ AS  AI AVE +GG+V C++FNRL LRA L PHKF P L+PRRA PPP++M  +L  + RGYLSPE+QL+ +
Sbjct:   40 PLCLNNLSPNPGSKKQRRRVGRGIGSGRGKTCGRGHKGQKKRKPAKGG----GFIGGQTPLHRSLPKRGFSNKRFQKPLEQLNLGRLQLWIDMGRL---IPKPDQP---ITLRDIKESGLISRIKHGVKLL---------------AKEKDLVHMPLNIEVTRASKEAIKAVEEKGGSVVCSYFNRLGLRAHLFPHKFHPALVPRRAAPPPKIMPYYLDYNNRGYLSPEIQLKKI 249          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CA06_9STRA5.060e-173100.00Ribosomal protein L18e/L15P (Fragment) n=1 Tax=Tri... [more]
D7G183_ECTSI2.340e-8357.74Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A4D9D510_9STRA3.160e-6151.74Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
W7U3I7_9STRA2.400e-5950.58Ribosomal protein L18e/L15P n=1 Tax=Nannochloropsi... [more]
A0A8J2SDD0_9STRA3.400e-5953.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U3R8U6_9STRA3.500e-5851.50Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3XNS7_HETAK1.320e-5749.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1BS99_9STRA7.770e-5749.35Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1Z8D1_TRICV2.780e-5449.79Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2V348_9STRA2.940e-5448.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:1122655..1123413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137483|gw1.6.95.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02876
GOsGO:0000002,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034097,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0070013,GO:0070125,GO:0070126,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830,GO:1990904
Preferred nameMRPL15
Descriptionstructural constituent of ribosome
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0200@1|root,KOG0846@2759|Eukaryota
Evalue3.87e-53
Seed ortholog529818.AMSG_03311T0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L18e/L15P
Ec32 orthologEc-23_002750.1
TranscriptId137805
TrackFilteredModels1
ProteinId137483
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137483gene_2173Tribonema minus UTEX_B_3156 geneContig_6 1122655..1123413 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2173_1exon_2173_1Tribonema minus UTEX_B_3156 exonContig_6 1122655..1123413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2173CDS_2173Tribonema minus UTEX_B_3156 CDSContig_6 1122655..1123413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137483Trimin1|137483|gw1.6.95.1Tribonema minus UTEX_B_3156 polypeptideContig_6 1122655..1123413 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2173 ID=mRNA_2173|Name=jgi.p|Trimin1|137483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_6:1122655..1123413+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACGTGCCCCTCAAACTCAACACCCTGGTGCCAAATCCAGGTGCAGTGAG
CCAGAAGCGCCGCGTCGGGAGGGGCATCGGCTCGGGCAGGGGCAAGACCT
CCAAGAGGGGTAACAAGGGCACCCGGGCACGGCAAGGGGGCAGCGTCCCC
CTGGGCTTCGAGGGAGGGCAGACGCCCCTGCACCGGCGCCTGCCCAAGCG
CGGCTTCAAGAACGGCGCCGACACCTCCTTCGACATCGTCAGCATCGACA
AGGTCTTCGAGTACGTGGCCATGGGGCGCCTGCGCGTCCCCGTCCCCGAG
CCCGGCGCCCCCCCCCGCATGCTCACAATGAAGGACCTGCAAGACGCGGG
CGTAATTGGCCGCATCAAGTTTGGCCTCAAGCTCGTGGGCGGGCGGCGCC
AAACTGCCGACGGTGACGCTCCCATGGCGCGCGCCGTCCCCGAGAGCGCG
TACGCCGCGCCGCTGCACCTCGAGGTCAGCGGCGCGAGCGCGGGCGCGAT
CGCGGCGGTCGAGGCGCGCGGTGGCACCGTCACGTGCGCGCACTTCAACC
GCCTCGCGCTGCGCGCGCTGCTCAAGCCGCACAAGTTCGCGCCGGGCCTG
CTGCCGCGGCGCGCGCGCCCGCCGCCGCGCCTCATGGCGCGCTTCCTCAG
CGGCGACAAGCGCGGGTACTTGTCGCCGGAGGTGCAGCTGCGCAACCTGC
GGCTGTTCGGGAGAGTCACATCGGAAGTGCGGCCGGAGGGGGAGGACGAG
GAGCAGGAG
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protein sequence of jgi.p|Trimin1|137483

>Trimin1|137483|gw1.6.95.1 ID=Trimin1|137483|gw1.6.95.1|Name=jgi.p|Trimin1|137483|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
HVPLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVP
LGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPE
PGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQTADGDAPMARAVPESA
YAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGL
LPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLFGRVTSEVRPEGEDE
EQE
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mRNA from alignment at Contig_6:1122655..1123413+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2173 ID=mRNA_2173|Name=jgi.p|Trimin1|137483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_6:1122655..1123413+ (Tribonema minus UTEX_B_3156 )
CACGTGCCCCTCAAACTCAACACCCTGGTGCCAAATCCAGGTGCAGTGAG CCAGAAGCGCCGCGTCGGGAGGGGCATCGGCTCGGGCAGGGGCAAGACCT CCAAGAGGGGTAACAAGGGCACCCGGGCACGGCAAGGGGGCAGCGTCCCC CTGGGCTTCGAGGGAGGGCAGACGCCCCTGCACCGGCGCCTGCCCAAGCG CGGCTTCAAGAACGGCGCCGACACCTCCTTCGACATCGTCAGCATCGACA AGGTCTTCGAGTACGTGGCCATGGGGCGCCTGCGCGTCCCCGTCCCCGAG CCCGGCGCCCCCCCCCGCATGCTCACAATGAAGGACCTGCAAGACGCGGG CGTAATTGGCCGCATCAAGTTTGGCCTCAAGCTCGTGGGCGGGCGGCGCC AAACTGCCGACGGTGACGCTCCCATGGCGCGCGCCGTCCCCGAGAGCGCG TACGCCGCGCCGCTGCACCTCGAGGTCAGCGGCGCGAGCGCGGGCGCGAT CGCGGCGGTCGAGGCGCGCGGTGGCACCGTCACGTGCGCGCACTTCAACC GCCTCGCGCTGCGCGCGCTGCTCAAGCCGCACAAGTTCGCGCCGGGCCTG CTGCCGCGGCGCGCGCGCCCGCCGCCGCGCCTCATGGCGCGCTTCCTCAG CGGCGACAAGCGCGGGTACTTGTCGCCGGAGGTGCAGCTGCGCAACCTGC GGCTGTTCGGGAGAGTCACATCGGAAGTGCGGCCGGAGGGGGAGGACGAG GAGCAGGAG
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Coding sequence (CDS) from alignment at Contig_6:1122655..1123413+

>mRNA_2173 ID=mRNA_2173|Name=jgi.p|Trimin1|137483|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_6:1122655..1123413+ (Tribonema minus UTEX_B_3156 )
CACGTGCCCCTCAAACTCAACACCCTGGTGCCAAATCCAGGTGCAGTGAG
CCAGAAGCGCCGCGTCGGGAGGGGCATCGGCTCGGGCAGGGGCAAGACCT
CCAAGAGGGGTAACAAGGGCACCCGGGCACGGCAAGGGGGCAGCGTCCCC
CTGGGCTTCGAGGGAGGGCAGACGCCCCTGCACCGGCGCCTGCCCAAGCG
CGGCTTCAAGAACGGCGCCGACACCTCCTTCGACATCGTCAGCATCGACA
AGGTCTTCGAGTACGTGGCCATGGGGCGCCTGCGCGTCCCCGTCCCCGAG
CCCGGCGCCCCCCCCCGCATGCTCACAATGAAGGACCTGCAAGACGCGGG
CGTAATTGGCCGCATCAAGTTTGGCCTCAAGCTCGTGGGCGGGCGGCGCC
AAACTGCCGACGGTGACGCTCCCATGGCGCGCGCCGTCCCCGAGAGCGCG
TACGCCGCGCCGCTGCACCTCGAGGTCAGCGGCGCGAGCGCGGGCGCGAT
CGCGGCGGTCGAGGCGCGCGGTGGCACCGTCACGTGCGCGCACTTCAACC
GCCTCGCGCTGCGCGCGCTGCTCAAGCCGCACAAGTTCGCGCCGGGCCTG
CTGCCGCGGCGCGCGCGCCCGCCGCCGCGCCTCATGGCGCGCTTCCTCAG
CGGCGACAAGCGCGGGTACTTGTCGCCGGAGGTGCAGCTGCGCAACCTGC
GGCTGTTCGGGAGAGTCACATCGGAAGTGCGGCCGGAGGGGGAGGACGAG
GAGCAGGAG
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