mRNA_2173 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A836CA06_9STRA (Ribosomal protein L18e/L15P (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA06_9STRA) HSP 1 Score: 485 bits (1249), Expect = 5.060e-173 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1 Query: 1 HVPLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLFGRVTSEVRPEGEDEEQE 759 HVPLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLFGRVTSEVRPEGEDEEQE Sbjct: 1 HVPLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLFGRVTSEVRPEGEDEEQE 253
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: D7G183_ECTSI (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G183_ECTSI) HSP 1 Score: 260 bits (665), Expect = 2.340e-83 Identity = 153/265 (57.74%), Postives = 189/265 (71.32%), Query Frame = 1 Query: 7 PLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQT-------------ADGDAP-----MARAVPESAYAA----PLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLFGRVTSEVRP 735 PL+LN L PN GA ++RVGRG GSG GKT +G+KG++AR+G + +GFEGGQTP HRR+PKRGFKNGAD SF+ VS+D+++ Y+AMGRLR P +++MKDLQDAG++ IKFG++LV G ++ A GDA +ARA E+ A P+HLEVS ASAGAI AVEA+GGTVTCAHFNRLALRALLKP KF LPRRARPPPRLM FL +RGYL+P+VQ+RNL+LFG T+E RP Sbjct: 48 PLRLNNLAPNDGARRDRKRVGRGNGSGTGKTCGKGHKGSKARKG-TKRIGFEGGQTPFHRRIPKRGFKNGADESFETVSVDRIYMYIAMGRLR---PNDAC---LISMKDLQDAGIVQDIKFGVRLVAGAKKNSVLGHNSPHRLTGATGDATGAENEVARAASEATKGAKSLPPVHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEE--LPRRARPPPRLMPFFLDHGRRGYLAPDVQMRNLKLFGAPTTEPRP 303
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A4D9D510_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D510_9STRA) HSP 1 Score: 202 bits (514), Expect = 3.160e-61 Identity = 134/259 (51.74%), Postives = 156/259 (60.23%), Query Frame = 1 Query: 10 LKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVI--GRIKFGLKLV--GGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKF-APGL-----------LPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLF-GRVTSEVRP 735 L L+ L NPGA +++RVGRGIGSG GKTS RG G + R ++P GFEGGQTP+HRRLPK GFKN + + V ++ MGRL VP R++TMKDL DAG+ R+K G+KL+ GG P H+EVS AS GAI AVE GGTVTC HFNRLALRALLKP F P L LPRRARPPPRLM +L D+RGYLSPEVQ RN LF G+VTSE P Sbjct: 19 LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLFVGTVQNWIDMGRLVVPAD------RLMTMKDLVDAGIFKANRVKHGIKLLARGGEH-----------------VHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPVLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKGLFNGQVTSEEIP 254
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: W7U3I7_9STRA (Ribosomal protein L18e/L15P n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3I7_9STRA) HSP 1 Score: 200 bits (509), Expect = 2.400e-59 Identity = 131/259 (50.58%), Postives = 154/259 (59.46%), Query Frame = 1 Query: 10 LKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVI--GRIKFGLKLV--GGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLL------------PRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLF-GRVTSEVRP 735 L L+ L NPGA +++RVGRGIGSG GKTS RG G + R ++P GFEGGQTP+HRRLPK GFKN + + V ++ MGRL VP R++TMKDL DAG+ R+K G+KL+ GG P H+EVS AS GAI AVE GGTVTC HFNRLALRALLKP F +L PRRARPPPRLM +L D+RGYLSPEVQ RN LF G+V SE P Sbjct: 109 LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPAD------RLMTMKDLVDAGIFKANRVKHGIKLLARGGEH-----------------VHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLFNGQVISEEIP 344
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A8J2SDD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDD0_9STRA) HSP 1 Score: 197 bits (500), Expect = 3.400e-59 Identity = 126/237 (53.16%), Postives = 160/237 (67.51%), Query Frame = 1 Query: 7 PLKLNTLVPNPGAVSQ-KRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIK---FGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRL 705 P+ LN L PNPG+ + K RVGRGIGSG+GKT+ RG+KGT+ARQGGSV GF GGQTPLH+ LPK GF + + +FD+V++ + +++ GRL EP + MLTM+DL +G++ +K G+KL+G E + +H+EVS ASA AI AVE GGTVTCAH+NRLALRALLKPHKF +PRRARPPPRLM ++S +KRG SP VQLRN RL Sbjct: 27 PMALNDLAPNPGSNKRPKIRVGRGIGSGKGKTAGRGHKGTKARQGGSVRPGFAGGQTPLHKALPKVGFTSRRE-AFDVVNVGSLQKWIENGRL-----EP-SDTEMLTMRDLNTSGLV-NLKGSTAGVKLLG-----------------EGEITSSVHIEVSRASASAIKAVEDAGGTVTCAHYNRLALRALLKPHKFEQ--MPRRARPPPRLMRYYVSDEKRGEYSPLVQLRNRRL 236
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A6U3R8U6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R8U6_9STRA) HSP 1 Score: 196 bits (499), Expect = 3.500e-58 Identity = 120/233 (51.50%), Postives = 152/233 (65.24%), Query Frame = 1 Query: 10 LKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGV--IGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLR 702 L LN + NPGAV +KRRVGRGIGS +GKT RG+KG +AR GG V FEGGQT ++RLPKRGFKN +++ + +V MGRLRVP P PP +TMKDL DAGV I +K G+KL+ ++T APL +E+S AS+ AI A+E GG + H+NRLAL+ALLKPH+F +LP+RA PPP+LM + S DKRGYLSPEVQ+R L+ Sbjct: 91 LNLNNIADNPGAVKKKRRVGRGIGSSKGKTCGRGHKGQKARAGGGVHPTFEGGQTKFYKRLPKRGFKNKHAEPMLPINVGTLQNFVDMGRLRVP--GPNDPP--ITMKDLVDAGVTKINAVKHGVKLLAKGKET---------------LTAPLKIEISRASSEAIQAIEKAGGQIMTVHYNRLALKALLKPHRF--DILPKRASPPPKLMEYYTSYDKRGYLSPEVQMRKLK 302
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A7S3XNS7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNS7_HETAK) HSP 1 Score: 193 bits (491), Expect = 1.320e-57 Identity = 117/235 (49.79%), Postives = 153/235 (65.11%), Query Frame = 1 Query: 4 VPLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIG---RIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNL 699 +PL+LN L NPGA Q++RVGRGIGSG GKT +G+KG +AR GGS+ GFEGGQTP++R PK GF N +++ + + MGR+R+P P+ PP LTMKDL D+G++ +K G+KL+ A + AP+HLEV GAS AIAAVEARGG VT ++NRL LRALLKP KF +P+RA PPP+LM +L ++RGYL+PE+QLR L Sbjct: 42 LPLRLNNLADNPGATKQRKRVGRGIGSGLGKTCGKGHKGQKARAGGSIRRGFEGGQTPIYRTTPKSGFTNKFKIERVPLNLGDLQMWADMGRIRLPGPD--EPP--LTMKDLTDSGIVNFTKTLKKGVKLL---------------AKGKELLRAPVHLEVMGASREAIAAVEARGGAVTARYYNRLGLRALLKPDKFEAKGVPKRAAPPPKLMPFYLDPERRGYLAPEMQLRRL 257
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A7S1BS99_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BS99_9STRA) HSP 1 Score: 194 bits (492), Expect = 7.770e-57 Identity = 114/231 (49.35%), Postives = 154/231 (66.67%), Query Frame = 1 Query: 16 LNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNG--ADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGV--IGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRN 696 LN + NPGAV +KRRVGRG GS +GKTS RG+KG ++R GG + FEGGQTP+H+R+PKRGF N AD I ++ K+ +Y+ MGRL P P + M DL ++G+ + +IK G KL+ G++ D P+ A+ ++E+S ASA AI A+E GGTVT H+NRLAL+ALLKPH+F ++PRRA PPP+L+ + S +KRGYLSPEVQ+RN Sbjct: 111 LNNIADNPGAVKKKRRVGRGTGSSKGKTSGRGHKGQKSRSGGKISPFFEGGQTPMHKRIPKRGFNNKKHADPMIPI-AVAKIQDYIDMGRLIPPTTRP------INMLDLVESGLTKMSKIKHGCKLLSGKKLPPGADPPVRSAI---------NIEISRASASAIRAIEEAGGTVTTVHYNRLALKALLKPHRF--DVIPRRAAPPPKLLPYYTSYEKRGYLSPEVQIRN 323
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A7S1Z8D1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8D1_TRICV) HSP 1 Score: 185 bits (469), Expect = 2.780e-54 Identity = 116/233 (49.79%), Postives = 147/233 (63.09%), Query Frame = 1 Query: 10 LKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGR--IKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLR 702 L LN + NPG+ ++RR+GRGIG +GKT RG+KG RAR G +V FEGGQTPLH+RLPKRG N T +++ + +YV MGRL VP P+ A P LT+ DL DAG++ + +K G+KL+ R+ PL LEVS AS AI AVE GG + H NRLAL+ALLKPHKF ++PRRA PPP+LM + S + RGYLSPEVQ+R LR Sbjct: 47 LTLNNISDNPGSRKKRRRIGRGIGCSKGKTCGRGHKGQRARAGKNVRPTFEGGQTPLHKRLPKRGMTNVHATPMTPINVGTLQDYVDMGRLAVPSPD--ASP--LTITDLVDAGIVKKSSVKHGVKLLAKGRERLQS---------------PLRLEVSRASRSAIDAVEEAGGEIATVHLNRLALKALLKPHKF--DVIPRRALPPPKLMPYYTSYENRGYLSPEVQMRQLR 258
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Match: A0A7S2V348_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V348_9STRA) HSP 1 Score: 184 bits (468), Expect = 2.940e-54 Identity = 113/235 (48.09%), Postives = 154/235 (65.53%), Query Frame = 1 Query: 7 PLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQ---GGSVPLGFEGGQTPLHRRLPKRGFKNGA-DTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGRRQTADGDAPMARAVPESAYAAPLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNL 699 PL LN L PNPG+ Q+RRVGRGIGSGRGKT RG+KG + R+ GG GF GGQTPLHR LPKRGF N + +++ ++ ++ MGRL +P+P P +T++D++++G+I RIK G+KL+ A + PL++EV+ AS AI AVE +GG+V C++FNRL LRA L PHKF P L+PRRA PPP++M +L + RGYLSPE+QL+ + Sbjct: 40 PLCLNNLSPNPGSKKQRRRVGRGIGSGRGKTCGRGHKGQKKRKPAKGG----GFIGGQTPLHRSLPKRGFSNKRFQKPLEQLNLGRLQLWIDMGRL---IPKPDQP---ITLRDIKESGLISRIKHGVKLL---------------AKEKDLVHMPLNIEVTRASKEAIKAVEEKGGSVVCSYFNRLGLRAHLFPHKFHPALVPRRAAPPPKIMPYYLDYNNRGYLSPEIQLKKI 249 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137483 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2173 ID=mRNA_2173|Name=jgi.p|Trimin1|137483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_6:1122655..1123413+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CACGTGCCCCTCAAACTCAACACCCTGGTGCCAAATCCAGGTGCAGTGAGback to top protein sequence of jgi.p|Trimin1|137483 >Trimin1|137483|gw1.6.95.1 ID=Trimin1|137483|gw1.6.95.1|Name=jgi.p|Trimin1|137483|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp HVPLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPback to top mRNA from alignment at Contig_6:1122655..1123413+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2173 ID=mRNA_2173|Name=jgi.p|Trimin1|137483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_6:1122655..1123413+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_6:1122655..1123413+ >mRNA_2173 ID=mRNA_2173|Name=jgi.p|Trimin1|137483|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_6:1122655..1123413+ (Tribonema minus UTEX_B_3156 )back to top |