mRNA_2142 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A835YNY8_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA) HSP 1 Score: 244 bits (623), Expect = 6.850e-82 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA
Sbjct: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 122
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A835YW01_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW01_9STRA) HSP 1 Score: 173 bits (439), Expect = 8.830e-54 Identity = 91/125 (72.80%), Postives = 100/125 (80.00%), Query Frame = 1
Query: 7 RLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTT-----RERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
RLM GDM+IIAEVA RN WWQATPAR EVQ+TLLA+ P + D DDT RERDVRD+LALAL G+IE++ AGFADVVTATEVIE+K R WKHALGQVLAYHAFMSDKSKRIHLFA
Sbjct: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 125
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A835YUG7_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA) HSP 1 Score: 171 bits (433), Expect = 7.470e-53 Identity = 87/127 (68.50%), Postives = 100/127 (78.74%), Query Frame = 1
Query: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRER-----DVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
VCRLM DMKIIAEV RN WWQATPAR EVQ+ LL + P + + + +DD RER DVRD+LALAL G+IE++ AGFADVVTATEVI++K WR WKH+LGQVLAYHAFMSDKSKRIHLFA
Sbjct: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 127
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A835Z393_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z393_9STRA) HSP 1 Score: 167 bits (423), Expect = 2.130e-51 Identity = 82/122 (67.21%), Postives = 95/122 (77.87%), Query Frame = 1
Query: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
VCRLM GDM+IIAEV R+ WWQ T AR EVQ+ LLA P + + + DTTRE DVRD+LALAL G+IE++ AGFADV+TAT VIE+K+WR WKHALGQVLAYHAF SDK RIHLFA
Sbjct: 1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 122
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.280e-22 Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
+CR+M GD+ ++ E+ N W++ +Q+ L+ PI + + +E VRD LA + G EV+ AG DV++ TEVIE+K+++ WKH LGQVLAYH F +KR+HLFA
Sbjct: 1 MCRVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIE--PIEYQH--VEKSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFA 118
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 3.010e-19 Identity = 50/120 (41.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 7 RLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
R+M GD+K++ + N W + +QR L+ PI H++ S RE+ VRD LAL + G E + GF DV++ TEVIE+KH+ WKH LGQVL+Y KR+HLFA
Sbjct: 4 RVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIE--PID-HTEKYVSG-RVREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFA 119
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.120e-16 Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
+CR+M GD+ + ++ W +Q+ LL P+ D + RE VRD LA + G EV+ +G+ DV++ TEVIE+K++R WK LGQVL Y + S+R+HLFA
Sbjct: 667 ICRVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLR--PVKNIEDCVT--ERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFA 784
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 7.500e-16 Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 1
Query: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
+CR+M GD+ + ++ W +Q+ LL P+ + + RE VRD LA + G EV+ +G+ DV++ TEVIE+K++R WK LGQVLAY + ++R+HLFA
Sbjct: 233 ICRVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLR--PVKYKENCVT--ERVRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFA 350
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: Q6XM53_9PHYC (FirrV-1-A34 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM53_9PHYC) HSP 1 Score: 76.6 bits (187), Expect = 6.090e-14 Identity = 42/123 (34.15%), Postives = 70/123 (56.91%), Query Frame = 1
Query: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTR-ERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
+CR++ GD+ + ++ W+ E++ L+A P+ +A + + E VRD LAL+ G EV +G DV+T+ EVIE+K+++ W HA+GQV Y A + ++R+HLFA
Sbjct: 246 LCRVLGGDLDLCEDINENYECWRVAEGGAEIREDLIA--PVQPVELEATRESSCYPEIKVRDALALSQGGRTEVCTPSGRIDVLTSREVIEVKYYQKWLHAVGQVQGYGAHYPNLARRLHLFA 366
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC) HSP 1 Score: 75.9 bits (185), Expect = 1.120e-13 Identity = 43/122 (35.25%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
+CR++ GD+++ A + W + P +V++ L+A P+ + + E +RD+LA +L G EV+ G DV+T+TEVIE+KH+R + H GQV+ Y + KR+HLFA
Sbjct: 239 MCRIIGGDLRLQATINKNYLEWTSAPELEKVRQDLIA--PLEHF--ELYKKRSGHEAVIRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFA 356 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2142 ID=mRNA_2142|Name=jgi.p|Trimin1|152266|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_6:851513..851878+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGTGCCGCCTCATGAGCGGCGACATGAAGATAATCGCCGAAGTGGCAGTback to top protein sequence of jgi.p|Trimin1|152266 >Trimin1|152266|gw1.6.303.1 ID=Trimin1|152266|gw1.6.303.1|Name=jgi.p|Trimin1|152266|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=122bp VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSback to top mRNA from alignment at Contig_6:851513..851878+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2142 ID=mRNA_2142|Name=jgi.p|Trimin1|152266|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_6:851513..851878+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_6:851513..851878+ >mRNA_2142 ID=mRNA_2142|Name=jgi.p|Trimin1|152266|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=366bp|location=Sequence derived from alignment at Contig_6:851513..851878+ (Tribonema minus UTEX_B_3156 )back to top |