mRNA_2142 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152266
Unique NamemRNA_2142
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A835YNY8_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA)

HSP 1 Score: 244 bits (623), Expect = 6.850e-82
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
            VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA
Sbjct:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 122          
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A835YW01_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW01_9STRA)

HSP 1 Score: 173 bits (439), Expect = 8.830e-54
Identity = 91/125 (72.80%), Postives = 100/125 (80.00%), Query Frame = 1
Query:    7 RLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTT-----RERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
            RLM GDM+IIAEVA RN WWQATPAR EVQ+TLLA+ P  +  D    DDT      RERDVRD+LALAL G+IE++  AGFADVVTATEVIE+K  R WKHALGQVLAYHAFMSDKSKRIHLFA
Sbjct:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 125          
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A835YUG7_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA)

HSP 1 Score: 171 bits (433), Expect = 7.470e-53
Identity = 87/127 (68.50%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRER-----DVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
            VCRLM  DMKIIAEV  RN WWQATPAR EVQ+ LL + P  +  + + +DD  RER     DVRD+LALAL G+IE++  AGFADVVTATEVI++K WR WKH+LGQVLAYHAFMSDKSKRIHLFA
Sbjct:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 127          
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A835Z393_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z393_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.130e-51
Identity = 82/122 (67.21%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
            VCRLM GDM+IIAEV  R+ WWQ T AR EVQ+ LLA  P     + + + DTTRE DVRD+LALAL G+IE++  AGFADV+TAT VIE+K+WR WKHALGQVLAYHAF SDK  RIHLFA
Sbjct:    1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 122          
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.280e-22
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
            +CR+M GD+ ++ E+   N  W++      +Q+ L+   PI       +   + +E  VRD LA  + G  EV+  AG  DV++ TEVIE+K+++ WKH LGQVLAYH F    +KR+HLFA
Sbjct:    1 MCRVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIE--PIEYQH--VEKSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFA 118          
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.010e-19
Identity = 50/120 (41.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    7 RLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
            R+M GD+K++  +   N  W +      +QR L+   PI  H++   S    RE+ VRD LAL + G  E +   GF DV++ TEVIE+KH+  WKH LGQVL+Y        KR+HLFA
Sbjct:    4 RVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIE--PID-HTEKYVSG-RVREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFA 119          
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-16
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
            +CR+M GD+ +  ++      W        +Q+ LL   P+    D     +  RE  VRD LA  + G  EV+  +G+ DV++ TEVIE+K++R WK  LGQVL Y +     S+R+HLFA
Sbjct:  667 ICRVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLR--PVKNIEDCVT--ERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFA 784          
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.500e-16
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 1
Query:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
            +CR+M GD+ +  ++      W        +Q+ LL   P+    +     +  RE  VRD LA  + G  EV+  +G+ DV++ TEVIE+K++R WK  LGQVLAY +     ++R+HLFA
Sbjct:  233 ICRVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLR--PVKYKENCVT--ERVRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFA 350          
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: Q6XM53_9PHYC (FirrV-1-A34 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM53_9PHYC)

HSP 1 Score: 76.6 bits (187), Expect = 6.090e-14
Identity = 42/123 (34.15%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTR-ERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
            +CR++ GD+ +  ++      W+      E++  L+A  P+     +A  + +   E  VRD LAL+  G  EV   +G  DV+T+ EVIE+K+++ W HA+GQV  Y A   + ++R+HLFA
Sbjct:  246 LCRVLGGDLDLCEDINENYECWRVAEGGAEIREDLIA--PVQPVELEATRESSCYPEIKVRDALALSQGGRTEVCTPSGRIDVLTSREVIEVKYYQKWLHAVGQVQGYGAHYPNLARRLHLFA 366          
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC)

HSP 1 Score: 75.9 bits (185), Expect = 1.120e-13
Identity = 43/122 (35.25%), Postives = 70/122 (57.38%), Query Frame = 1
Query:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 366
            +CR++ GD+++ A +      W + P   +V++ L+A  P+     +     +  E  +RD+LA +L G  EV+   G  DV+T+TEVIE+KH+R + H  GQV+ Y  +     KR+HLFA
Sbjct:  239 MCRIIGGDLRLQATINKNYLEWTSAPELEKVRQDLIA--PLEHF--ELYKKRSGHEAVIRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFA 356          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152266 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNY8_9STRA6.850e-82100.00FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835YW01_9STRA8.830e-5472.80FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835YUG7_9STRA7.470e-5368.50FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835Z393_9STRA2.130e-5167.21FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
D7G319_ECTSI1.280e-2240.16FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LP52_ECTSI3.010e-1941.67FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L5N7_9PHAE1.120e-1636.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJP2_9PHAE7.500e-1636.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q6XM53_9PHYC6.090e-1434.15FirrV-1-A34 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LW94_9PHYC1.120e-1335.25Uncharacterized protein n=1 Tax=Feldmannia species... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:851513..851878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152266|gw1.6.303.1
Max annot lvl1117|Cyanobacteria
EggNOG OGs29WTT@1|root,30IF6@2|Bacteria,1G9IK@1117|Cyanobacteria,1JM7S@1189|Stigonemataceae
Evalue5.57e-12
Seed ortholog221288.JH992899_gene5
Hectar predicted targeting categoryother localisation
TranscriptId152588
TrackFilteredModels1
ProteinId152266
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152266gene_2142Tribonema minus UTEX_B_3156 geneContig_6 851513..851878 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2142_1exon_2142_1Tribonema minus UTEX_B_3156 exonContig_6 851513..851878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2142CDS_2142Tribonema minus UTEX_B_3156 CDSContig_6 851513..851878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152266Trimin1|152266|gw1.6.303.1Tribonema minus UTEX_B_3156 polypeptideContig_6 851513..851878 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2142 ID=mRNA_2142|Name=jgi.p|Trimin1|152266|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_6:851513..851878+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGTGCCGCCTCATGAGCGGCGACATGAAGATAATCGCCGAAGTGGCAGT
GCGCAATGCGTGGTGGCAGGCGACGCCGGCGCGGTGCGAGGTGCAGCGGA
CGCTCCTCGCCTCGTCACCCATTTCCGCGCACTCTGATGATGCCGACAGT
GATGACACCACTCGTGAGCGCGACGTGCGCGATGAGCTAGCACTGGCGCT
GGCCGGCAACATCGAGGTCCAGATGTCCGCGGGCTTTGCGGACGTCGTCA
CCGCCACTGAGGTCATCGAGATCAAGCACTGGCGCACGTGGAAGCACGCT
CTGGGTCAGGTGCTGGCCTACCATGCGTTCATGAGCGACAAGAGCAAGCG
CATCCACCTCTTCGCC
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protein sequence of jgi.p|Trimin1|152266

>Trimin1|152266|gw1.6.303.1 ID=Trimin1|152266|gw1.6.303.1|Name=jgi.p|Trimin1|152266|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=122bp
VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADS
DDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHA
LGQVLAYHAFMSDKSKRIHLFA
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mRNA from alignment at Contig_6:851513..851878+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2142 ID=mRNA_2142|Name=jgi.p|Trimin1|152266|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_6:851513..851878+ (Tribonema minus UTEX_B_3156 )
GTGTGCCGCCTCATGAGCGGCGACATGAAGATAATCGCCGAAGTGGCAGT GCGCAATGCGTGGTGGCAGGCGACGCCGGCGCGGTGCGAGGTGCAGCGGA CGCTCCTCGCCTCGTCACCCATTTCCGCGCACTCTGATGATGCCGACAGT GATGACACCACTCGTGAGCGCGACGTGCGCGATGAGCTAGCACTGGCGCT GGCCGGCAACATCGAGGTCCAGATGTCCGCGGGCTTTGCGGACGTCGTCA CCGCCACTGAGGTCATCGAGATCAAGCACTGGCGCACGTGGAAGCACGCT CTGGGTCAGGTGCTGGCCTACCATGCGTTCATGAGCGACAAGAGCAAGCG CATCCACCTCTTCGCC
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Coding sequence (CDS) from alignment at Contig_6:851513..851878+

>mRNA_2142 ID=mRNA_2142|Name=jgi.p|Trimin1|152266|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=366bp|location=Sequence derived from alignment at Contig_6:851513..851878+ (Tribonema minus UTEX_B_3156 )
GTGTGCCGCCTCATGAGCGGCGACATGAAGATAATCGCCGAAGTGGCAGT
GCGCAATGCGTGGTGGCAGGCGACGCCGGCGCGGTGCGAGGTGCAGCGGA
CGCTCCTCGCCTCGTCACCCATTTCCGCGCACTCTGATGATGCCGACAGT
GATGACACCACTCGTGAGCGCGACGTGCGCGATGAGCTAGCACTGGCGCT
GGCCGGCAACATCGAGGTCCAGATGTCCGCGGGCTTTGCGGACGTCGTCA
CCGCCACTGAGGTCATCGAGATCAAGCACTGGCGCACGTGGAAGCACGCT
CTGGGTCAGGTGCTGGCCTACCATGCGTTCATGAGCGACAAGAGCAAGCG
CATCCACCTCTTCGCC
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