mRNA_2090 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: A0A836CB37_9STRA (FA_FANCE domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB37_9STRA) HSP 1 Score: 375 bits (962), Expect = 2.430e-130 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1
Query: 1 AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAACDPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLKS 663
AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAACDPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLKS
Sbjct: 1 AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAACDPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLKS 221
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: D7FQ65_ECTSI (FA_FANCE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ65_ECTSI) HSP 1 Score: 132 bits (333), Expect = 9.400e-35 Identity = 102/236 (43.22%), Postives = 128/236 (54.24%), Query Frame = 1
Query: 1 AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLL-HGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAP-----GSAQCELLLRTARSALPP---------HAAAPLV--AAACDPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRL 657
A+C VTPAL LR C FVR L+PRA AL+APA R LV+ V+ K RP V++GL++PLL GD A+ GSA A G A+ E P +AAA AA RC W + TV ++T+ L +K L D A+AAL +EA AERA KSLKF TL+H+LV +YGPQ PH VLRTA + +TFM K+ L+ALQRL
Sbjct: 2 AICDGFVTPALSLRNCLAFVRAVLVPRARALNAPASRLLVTAVSGIGKARPGVVIDGLVLPLLCGGDPASAVGSAQCELCTRLIKQILPKDTLEAVLVGLCGPAEDESAQTAGGWIEGPSGGSGGNGTNAAAGRRHDAAGSSSRCVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAALQKSLKFTTLIHSLVTRYGPQLKPHVPVLRTAVGRCSTFMVKAVLAALQRL 237
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: A0A6H5KA87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA87_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.830e-21 Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 355 LVAAACDPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRL 657
L AA RC W + TV ++T+ L +K L D A+AAL +EA AERA KSLKF TL+H+LV +YGPQ PH VLRTA + +TFM K+ L+ALQRL
Sbjct: 62 LYAAGSSLRCVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAALQKSLKFTTLIHSLVTRYGPQLKPHVPVLRTAVGRCSTFMVKAVLAALQRL 162
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: A0A7R9Z4A9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z4A9_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.160e-7 Identity = 67/224 (29.91%), Postives = 104/224 (46.43%), Query Frame = 1
Query: 49 TEFVRGALLPRAAAL--SAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAA-AC-DP--------------RCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAV--LRTAAEKNTTFMKKSALSALQRLK 660
T ++R +LP + L S PA RTL+S + A++RP V+ LL+P L GS+ +GG P A C+L+ R + A A L+ C DP + W D ++ ++TS + + L D+ ++ L+ +++ KS+KF+TL H LV KYG Q + V L +AE TFM K+ S L++LK
Sbjct: 259 TAYLRSFVLPLLSNLNGSKPASRTLISTTSWLARERPSETVKALLIPSLCVPIDVRKGSS--------------NGG---PNKALCDLVGRVVKGAKEKEPIAELLTGLVCGDPAGVKIISGGSCSSDKMVWTDESIPIMTSCINKRATLPDATISELSRQVQLLVPNMR--KSMKFSTLFHALVTKYGNQLRKLSMVGDLTQSAEMLETFMGKTITSVLRKLK 463
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: A0A8K1FLS5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLS5_PYTOL) HSP 1 Score: 59.3 bits (142), Expect = 9.690e-7 Identity = 67/209 (32.06%), Postives = 95/209 (45.45%), Query Frame = 1
Query: 52 EFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQ-AVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAACDPRCAWNDGTVALVTSLLGMKLVLD----DSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLKS 663
F++ ALLPR A ++ R L+ V AK Q A+++GL+VP+L + +G SA + + Q + L+ + S N+ V + S+L +K L + + L G +E EAE KS KFATLL TLV KYG Q HA L A K T+ M K+AL A+Q+LKS
Sbjct: 299 SFLQAALLPRVLAATSVISRVLLQTVLLYAKPSYQTALIDGLIVPVL---STSGISSAQGEALTRILREKGVA-------AEQLDTLVNQSLSQ--------------STSILANEAVVLVFQSVLNLKPSLSAATIERLITVLNGSVENEAEI---LKSAKFATLLFTLVSKYGEQCAAHADDLEAVATKLTSVMAKAALRAIQKLKS 480
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: A0A329T1M1_9STRA (FA_FANCE domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1M1_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 2.670e-5 Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 373 DPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAER--AEQCK-SLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLK 660
DP N+ + + ++L K VL V L G EA ER AEQ + SLKFAT++ TL+ KY Q H L A + T+ M K+ L +LQ+LK
Sbjct: 411 DPHLLSNESALLVFQNILNTKPVLSALTVERLVGACEAVLERPEAEQVRGSLKFATVIFTLISKYPQQCAGHVETLEAIATQLTSIMAKTTLRSLQKLK 509 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2090 ID=mRNA_2090|Name=jgi.p|Trimin1|151488|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=663bp|location=Sequence derived from alignment at Contig_6:446706..447368+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGGTGTGCACGAAGGCGGTGACGCCGGCGCTGGGCCTGCGCGCGTGCACback to top protein sequence of jgi.p|Trimin1|151488 >Trimin1|151488|gw1.6.288.1 ID=Trimin1|151488|gw1.6.288.1|Name=jgi.p|Trimin1|151488|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=221bp AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRback to top mRNA from alignment at Contig_6:446706..447368+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2090 ID=mRNA_2090|Name=jgi.p|Trimin1|151488|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=663bp|location=Sequence derived from alignment at Contig_6:446706..447368+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_6:446706..447368+ >mRNA_2090 ID=mRNA_2090|Name=jgi.p|Trimin1|151488|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=663bp|location=Sequence derived from alignment at Contig_6:446706..447368+ (Tribonema minus UTEX_B_3156 )back to top |