mRNA_19120 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835Z5M5_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M5_9STRA) HSP 1 Score: 275 bits (702), Expect = 1.020e-93 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 Query: 1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL Sbjct: 1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 129
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835YGN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN2_9STRA) HSP 1 Score: 193 bits (490), Expect = 1.170e-60 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 Query: 1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAW 267 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAW Sbjct: 93 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAW 181
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835YUJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ5_9STRA) HSP 1 Score: 177 bits (450), Expect = 1.830e-49 Identity = 81/125 (64.80%), Postives = 97/125 (77.60%), Query Frame = 1 Query: 1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGN--GAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTP 369 M+PGPVIRM+ACNTYKL + ND A WPAG N + G +NG PT+TN+H HGLHISG AP D + T+++AG+ YTYT+PC+H S T WYHPH HGS ALQADGGAAGML++EGAPRE A P Sbjct: 336 MVPGPVIRMQACNTYKLRLVNDQAGWPAGLNADQIGGVNGFHDPTVTNLHLHGLHISGMAPGDSMDTLLEAGEMNVYTYTIPCEHASGTFWYHPHGHGSTALQADGGAAGMLIVEGAPRESAKFP 460
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.490e-47 Identity = 77/129 (59.69%), Postives = 94/129 (72.87%), Query Frame = 1 Query: 1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387 +IPGP+IRMKAC Y LTV NDL AWP G G +NG GPT+TN+HTHGLHISGE+P+D+ F I G + Y Y +PCDH+ WYHPHKHG+VALQ GGAAG+++IE RE + TPA IQT+ Sbjct: 427 LIPGPIIRMKACQVYYLTVRNDLGAWPEGKPETGVMNGFHGPTVTNIHTHGLHISGESPADNPFVSILPGQEYTYQYRIPCDHIGGLHWYHPHKHGAVALQTHGGAAGLIVIEPMAREASVTPAAIQTM 555
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835Z7H4_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H4_9STRA) HSP 1 Score: 171 bits (432), Expect = 2.740e-47 Identity = 80/130 (61.54%), Postives = 96/130 (73.85%), Query Frame = 1 Query: 1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTV-IDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387 M+PGP+IRMKAC Y++TVHN LA +P G G G+ G PT TN+H HGLH+SG+APSDDV TV I G +F YTY +PCDH T WYHPHK GS ALQADGGAAGM++IEG+ RE A+TP T+ Sbjct: 41 MVPGPLIRMKACRNYRITVHNMLAEYPVGKTGTGS--GQYDPTWTNLHLHGLHVSGDAPSDDVLTVNIQPGLSFTYTYRIPCDHAGGTNWYHPHKRGSTALQADGGAAGMVIIEGSVREAANTPVAYGTV 168
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA) HSP 1 Score: 166 bits (420), Expect = 4.040e-45 Identity = 81/132 (61.36%), Postives = 93/132 (70.45%), Query Frame = 1 Query: 1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGA---INGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387 MIPGP++RM+ C TY LTV N L WPA A +N + P +TN+H HGLH+SGEAP DDVF VI+ GDA YTYT+PCDH S T WYHPH HGSVALQ GGAAGML+IE + RE TPAEI L Sbjct: 567 MIPGPLMRMQPCGTYHLTVKNALKGWPAPPPRIAAAAQLNSVHDPLVTNVHVHGLHVSGEAPGDDVFGVIEPGDAAMYTYTIPCDHASGTNWYHPHHHGSVALQTGGGAAGMLVIEPSAREALGTPAEIAAL 698
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A836C7C1_9STRA (Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C1_9STRA) HSP 1 Score: 163 bits (412), Expect = 3.380e-44 Identity = 84/136 (61.76%), Postives = 92/136 (67.65%), Query Frame = 1 Query: 1 MIPGPVIRMKACNTYKLTVHNDLAAWPAG------NNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVF-TVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387 MIPGP+IRMKACNTYKLTV N L WP G NGNGA PT+TN+H HGLH+S AP DDV T I G YTY +PCDHVS T WYHPH+HGS ALQAD GAAGML+IEG RE DT A + L Sbjct: 102 MIPGPLIRMKACNTYKLTVVNKLGNWPEGVLDPPYPNGNGANR----PTVTNLHVHGLHVSSAAPGDDVVDTKIAPGHELTYTYKIPCDHVSGTYWYHPHRHGSTALQADSGAAGMLIIEGGGREAYDTAAPYKDL 233
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA) HSP 1 Score: 159 bits (403), Expect = 7.630e-43 Identity = 71/127 (55.91%), Postives = 85/127 (66.93%), Query Frame = 1 Query: 7 PGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387 PGP++RM+AC Y LT+ N L WP G +NG PT+TN+H HG+HISG AP DDVF I AG+ EY YT+PCDH T WYHPH HG VALQ+ GA GML++E PRE D P EIQ + Sbjct: 306 PGPIMRMQACGVYHLTLKNTLEGWPEGIGPEAGVNGEHDPTVTNIHLHGMHISGMAPGDDVFAAIAAGEEQEYVYTVPCDHTGGTNWYHPHHHGIVALQSGTGAMGMLIVESNPREAQDMPPEIQMM 432
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835ZAX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX7_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.670e-41 Identity = 76/132 (57.58%), Postives = 89/132 (67.42%), Query Frame = 1 Query: 1 MIPGPVIRMKA---CNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387 M+PGP++RMKA C Y L V NDLA WPA G IN + PT+TN+H HGLH+SG AP DDV +I+ G +YTYTLPCDH S T WYHPH HGS ALQ GGA G+L+IE + RE AD PA L Sbjct: 292 MLPGPIMRMKASGTCGKYTLNVINDLARWPAPEGG--MINTLHDPTVTNLHLHGLHVSGMAPGDDVSIMIEPGQTNKYTYTLPCDHSSGTNWYHPHNHGSSALQTTGGAYGLLVIESSARELADMPAAYAAL 421
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA) HSP 1 Score: 144 bits (363), Expect = 1.940e-37 Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 1 Query: 1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387 MIPGP++RM+ C Y + V ND A +P + A+N M PT TN+H HGLH+SGE+P DD F I+ G +YT +PCDH S + WYHPH HGSVA+Q +GGAAG+L++ +P E + TP +IQ L Sbjct: 615 MIPGPLMRMEPCGVYHINVFNDQAEFPDTAR-DYALNTMGAPTHTNLHVHGLHVSGESPGDDSFVTIEPGATQQYTIAVPCDHSSGSNWYHPHHHGSVAIQTEGGAAGLLVVGPSPTEASGTPNDIQAL 742 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_19120 ID=mRNA_19120|Name=jgi.p|Trimin1|144443|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_407:13017..14381- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGATTCCTGGTCCCGTCATTCGCATGAAGGCCTGCAACACGTACAAGTTback to top protein sequence of jgi.p|Trimin1|144443 >Trimin1|144443|gw1.407.2.1 ID=Trimin1|144443|gw1.407.2.1|Name=jgi.p|Trimin1|144443|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHback to top mRNA from alignment at Contig_407:13017..14381- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_19120 ID=mRNA_19120|Name=jgi.p|Trimin1|144443|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1365bp|location=Sequence derived from alignment at Contig_407:13017..14381- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_407:13017..14381- >mRNA_19120 ID=mRNA_19120|Name=jgi.p|Trimin1|144443|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_407:13017..14381- (Tribonema minus UTEX_B_3156 )back to top |