mRNA_19120 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144443
Unique NamemRNA_19120
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835Z5M5_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M5_9STRA)

HSP 1 Score: 275 bits (702), Expect = 1.020e-93
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL
Sbjct:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 129          
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835YGN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN2_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.170e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAW 267
            MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAW
Sbjct:   93 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAW 181          
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835YUJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ5_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.830e-49
Identity = 81/125 (64.80%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGN--GAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTP 369
            M+PGPVIRM+ACNTYKL + ND A WPAG N +  G +NG   PT+TN+H HGLHISG AP D + T+++AG+   YTYT+PC+H S T WYHPH HGS ALQADGGAAGML++EGAPRE A  P
Sbjct:  336 MVPGPVIRMQACNTYKLRLVNDQAGWPAGLNADQIGGVNGFHDPTVTNLHLHGLHISGMAPGDSMDTLLEAGEMNVYTYTIPCEHASGTFWYHPHGHGSTALQADGGAAGMLIVEGAPRESAKFP 460          
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.490e-47
Identity = 77/129 (59.69%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            +IPGP+IRMKAC  Y LTV NDL AWP G    G +NG  GPT+TN+HTHGLHISGE+P+D+ F  I  G  + Y Y +PCDH+    WYHPHKHG+VALQ  GGAAG+++IE   RE + TPA IQT+
Sbjct:  427 LIPGPIIRMKACQVYYLTVRNDLGAWPEGKPETGVMNGFHGPTVTNIHTHGLHISGESPADNPFVSILPGQEYTYQYRIPCDHIGGLHWYHPHKHGAVALQTHGGAAGLIVIEPMAREASVTPAAIQTM 555          
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835Z7H4_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.740e-47
Identity = 80/130 (61.54%), Postives = 96/130 (73.85%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTV-IDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            M+PGP+IRMKAC  Y++TVHN LA +P G  G G+  G   PT TN+H HGLH+SG+APSDDV TV I  G +F YTY +PCDH   T WYHPHK GS ALQADGGAAGM++IEG+ RE A+TP    T+
Sbjct:   41 MVPGPLIRMKACRNYRITVHNMLAEYPVGKTGTGS--GQYDPTWTNLHLHGLHVSGDAPSDDVLTVNIQPGLSFTYTYRIPCDHAGGTNWYHPHKRGSTALQADGGAAGMVIIEGSVREAANTPVAYGTV 168          
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 166 bits (420), Expect = 4.040e-45
Identity = 81/132 (61.36%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGA---INGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            MIPGP++RM+ C TY LTV N L  WPA      A   +N +  P +TN+H HGLH+SGEAP DDVF VI+ GDA  YTYT+PCDH S T WYHPH HGSVALQ  GGAAGML+IE + RE   TPAEI  L
Sbjct:  567 MIPGPLMRMQPCGTYHLTVKNALKGWPAPPPRIAAAAQLNSVHDPLVTNVHVHGLHVSGEAPGDDVFGVIEPGDAAMYTYTIPCDHASGTNWYHPHHHGSVALQTGGGAAGMLVIEPSAREALGTPAEIAAL 698          
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A836C7C1_9STRA (Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.380e-44
Identity = 84/136 (61.76%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAG------NNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVF-TVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            MIPGP+IRMKACNTYKLTV N L  WP G       NGNGA      PT+TN+H HGLH+S  AP DDV  T I  G    YTY +PCDHVS T WYHPH+HGS ALQAD GAAGML+IEG  RE  DT A  + L
Sbjct:  102 MIPGPLIRMKACNTYKLTVVNKLGNWPEGVLDPPYPNGNGANR----PTVTNLHVHGLHVSSAAPGDDVVDTKIAPGHELTYTYKIPCDHVSGTYWYHPHRHGSTALQADSGAAGMLIIEGGGREAYDTAAPYKDL 233          
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA)

HSP 1 Score: 159 bits (403), Expect = 7.630e-43
Identity = 71/127 (55.91%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    7 PGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            PGP++RM+AC  Y LT+ N L  WP G      +NG   PT+TN+H HG+HISG AP DDVF  I AG+  EY YT+PCDH   T WYHPH HG VALQ+  GA GML++E  PRE  D P EIQ +
Sbjct:  306 PGPIMRMQACGVYHLTLKNTLEGWPEGIGPEAGVNGEHDPTVTNIHLHGMHISGMAPGDDVFAAIAAGEEQEYVYTVPCDHTGGTNWYHPHHHGIVALQSGTGAMGMLIVESNPREAQDMPPEIQMM 432          
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835ZAX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX7_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.670e-41
Identity = 76/132 (57.58%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    1 MIPGPVIRMKA---CNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            M+PGP++RMKA   C  Y L V NDLA WPA   G   IN +  PT+TN+H HGLH+SG AP DDV  +I+ G   +YTYTLPCDH S T WYHPH HGS ALQ  GGA G+L+IE + RE AD PA    L
Sbjct:  292 MLPGPIMRMKASGTCGKYTLNVINDLARWPAPEGG--MINTLHDPTVTNLHLHGLHVSGMAPGDDVSIMIEPGQTNKYTYTLPCDHSSGTNWYHPHNHGSSALQTTGGAYGLLVIESSARELADMPAAYAAL 421          
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.940e-37
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            MIPGP++RM+ C  Y + V ND A +P     + A+N M  PT TN+H HGLH+SGE+P DD F  I+ G   +YT  +PCDH S + WYHPH HGSVA+Q +GGAAG+L++  +P E + TP +IQ L
Sbjct:  615 MIPGPLMRMEPCGVYHINVFNDQAEFPDTAR-DYALNTMGAPTHTNLHVHGLHVSGESPGDDSFVTIEPGATQQYTIAVPCDHSSGSNWYHPHHHGSVAIQTEGGAAGLLVVGPSPTEASGTPNDIQAL 742          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144443 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5M5_9STRA1.020e-93100.00Plastocyanin-like domain-containing protein (Fragm... [more]
A0A835YGN2_9STRA1.170e-60100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUJ5_9STRA1.830e-4964.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCB5_9STRA1.490e-4759.69CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z7H4_9STRA2.740e-4761.54Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
A0A836CK08_9STRA4.040e-4561.36Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C7C1_9STRA3.380e-4461.76Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835ZH56_9STRA7.630e-4355.91CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZAX7_9STRA1.670e-4157.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVH6_9STRA1.940e-3751.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_407contigContig_407:13017..14381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144443|gw1.407.2.1
DescriptionMulticopper oxidase
COG categoryQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2132@1|root,2RBNT@2759|Eukaryota
Evalue2.38e-27
Seed ortholog2903.EOD27587
Hectar predicted targeting categoryother localisation
TranscriptId144765
TrackFilteredModels1
ProteinId144443
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144443gene_19120Tribonema minus UTEX_B_3156 geneContig_407 13017..14381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144443Trimin1|144443|gw1.407.2.1Tribonema minus UTEX_B_3156 polypeptideContig_407 13017..14381 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_19120_3exon_19120_3Tribonema minus UTEX_B_3156 exonContig_407 13017..13137 -
exon_19120_2exon_19120_2Tribonema minus UTEX_B_3156 exonContig_407 13792..14027 -
exon_19120_1exon_19120_1Tribonema minus UTEX_B_3156 exonContig_407 14352..14381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_19120CDS_19120Tribonema minus UTEX_B_3156 CDSContig_407 14352..14381 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_19120 ID=mRNA_19120|Name=jgi.p|Trimin1|144443|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_407:13017..14381- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCTGGTCCCGTCATTCGCATGAAGGCCTGCAACACGTACAAGTT
GACAGTGCACAACGACCTTGCCGCGTGGCCGGCCGGCAACAACGGCAACG
GCGCCATCAATGGCATGATGGGACCCACAATGACCAACATGCACACGCAC
GGCCTGCACATCAGTGGCGAGGCGCCCAGTGACGACGTGTTTACGGTCAT
CGACGCGGGCGACGCGTTTGAGTACACGTACACGCTGCCCTGCGACCACG
TCAGCAGCACTGCATGGTACCACCCCCACAAGCACGGCAGCGTCGCGCTG
CAAGCTGATGGCGGTGCGGCAGGCATGCTGCTAATTGAGGGGGCCCCGCG
TGAGTACGCCGACACCCCCGCTGAAATCCAGACCCTG
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protein sequence of jgi.p|Trimin1|144443

>Trimin1|144443|gw1.407.2.1 ID=Trimin1|144443|gw1.407.2.1|Name=jgi.p|Trimin1|144443|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTH
GLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVAL
QADGGAAGMLLIEGAPREYADTPAEIQTL
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mRNA from alignment at Contig_407:13017..14381-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_19120 ID=mRNA_19120|Name=jgi.p|Trimin1|144443|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1365bp|location=Sequence derived from alignment at Contig_407:13017..14381- (Tribonema minus UTEX_B_3156 )
ATGATTCCTGGTCCCGTCATTCGCATGAAGGTGAGCTTCAGCTGATTAAA AGTGTGTGCATTGAGGTAATTCACTGCACGAATGCAAATTACCCCCCCCC CGGCACTGCATGCAGAACCTCACATTATGCAGTCGAGATTATGCATGAAA TTGACCCCGATGGATCAACAGCAGGTAAGCTCTTTTTACTGGCGCAGCCC GTCCTTACGCTGCTTGTTGATGTTGCTCAGTGCGGTGGCTGAAGTGAGCC CCGCCGGCTCTCCCATCTAGGTATCACTGCGACTTACTCATGGTGTCACC ACTGCCTACATCTATGAACCTCCACCCCTTCTACCCTGTGCTGTGCACCG ACAGGCCTGCAACACGTACAAGTTGACAGTGCACAACGACCTTGCCGCGT GGCCGGCCGGCAACAACGGCAACGGCGCCATCAATGGCATGATGGGACCC ACAATGACCAACATGCACACGCACGGCCTGCACATCAGTGGCGAGGCGCC CAGTGACGACGTGTTTACGGTCATCGACGCGGGCGACGCGTTTGAGTACA CGTACACGCTGCCCTGCGACCACGTCAGCAGCACTGCATGGTGAGCACTC GCAACAATGGGCGTACGTTGAAACGTATCAGACGGGCGAGCGTTGGGTAC ACACAGCCTGCCTGGCTCAACTTTAGGTGTTTCCATGTTCGCAGGAAGTG TGCAACATATCTGCAGAACCCCAAGTATGCTGCGCACACAACACCAACAC CAGTTCAACATTGCTTGGTGCCACTTCAAACCATGACCTGCCTGTGCATA TGTTGATCGCACGCCAGTTGGGCCTCTCCATGTGCGCTGCACTAATGTCA TGTCTGGTGCCTGGCAGTAGCAGAGCACACGGCCATGGACTTTGCAGAAG TTATTCTGAACATATTATGTGTACATGAATGACACTAAGTACATGCGCCT CGTGGCCTCCGACGCTATGTCCAGTTCTGCTGCCAGCGCGCATTGCTCAC AAAAACCAGTGCGCGGTACACTTGTTCTGCTTGTTGGTAGCATGAGGATT GCAGGTGGCAAACTTCAATTCACTTGCCGTCCGCTACGTATACCCACAGC ACGAAAGCAGACGAAGCACGGTTGAACTGCTGCCAGCAAAGCACCGCCGT GAGACGCAACAACAGCACTCTTACCCGCATCATCATGGATGCATCATGTC TCAGCACTCAACACGTGGCCCTTGCCCGCCCCTGTGCTGCTTAGGTACCA CCCCCACAAGCACGGCAGCGTCGCGCTGCAAGCTGATGGCGGTGCGGCAG GCATGCTGCTAATTGAGGGGGCCCCGCGTGAGTACGCCGACACCCCCGCT GAAATCCAGACCCTG
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Coding sequence (CDS) from alignment at Contig_407:13017..14381-

>mRNA_19120 ID=mRNA_19120|Name=jgi.p|Trimin1|144443|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_407:13017..14381- (Tribonema minus UTEX_B_3156 )
ATGATTCCTGGTCCCGTCATTCGCATGAAGGCCTGCAACACGTACAAGTT
GACAGTGCACAACGACCTTGCCGCGTGGCCGGCCGGCAACAACGGCAACG
GCGCCATCAATGGCATGATGGGACCCACAATGACCAACATGCACACGCAC
GGCCTGCACATCAGTGGCGAGGCGCCCAGTGACGACGTGTTTACGGTCAT
CGACGCGGGCGACGCGTTTGAGTACACGTACACGCTGCCCTGCGACCACG
TCAGCAGCACTGCATGGTACCACCCCCACAAGCACGGCAGCGTCGCGCTG
CAAGCTGATGGCGGTGCGGCAGGCATGCTGCTAATTGAGGGGGCCCCGCG
TGAGTACGCCGACACCCCCGCTGAAATCCAGACCCTG
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