mRNA_19046 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354681
Unique NamemRNA_19046
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A836CDD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDD2_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.070e-36
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
Query:    1 MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEWDELVVVEVDGDDGDSDIEMEE 306
            MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEWDELVVVEVDGDDGDSDIEMEE
Sbjct:    1 MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEWDELVVVEVDGDDGDSDIEMEE 102          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A835YRU4_9STRA (KOW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.190e-15
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 2
Query:  227 RRVRSGTSLLWWRWMATTATATSRWRSERILGPRPLA 337
            RRVRSGTSLLWWRWMATTATATSRWRSERILGPRPLA
Sbjct:  174 RRVRSGTSLLWWRWMATTATATSRWRSERILGPRPLA 210          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A836CNT1_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.920e-13
Identity = 83/123 (67.48%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   37 GTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---------------------------------AEWDELVVVEVDGDDGDSDIEMEE 306
            GTAVQVGIQPSKVELTKLKLDKDRTALLDR   +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                  AEWDELVVVEVDGDDGDSDIEMEE
Sbjct:   92 GTAVQVGIQPSKVELTKLKLDKDRTALLDRRKRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEWDELVVVEVDGDDGDSDIEMEE 214          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A6A6L7D5_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6L7D5_HEVBR)

HSP 1 Score: 52.8 bits (125), Expect = 5.160e-6
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    7 SLPVRKQDE------GGTAVQVGIQPSKVELTKLKLDKDRTALLDR 126
            S+PVRK DE       G+ V VGI PSKV +TKL+LDKDR +LLDR
Sbjct:   17 SMPVRKDDEVQIEKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 62          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: G3HPH6_CRIGR (60S ribosomal protein L26 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=G3HPH6_CRIGR)

HSP 1 Score: 49.7 bits (117), Expect = 4.610e-5
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1
Query:   10 LPVRKQDE-----GGTAVQVGIQPSKVELTKLKLDKDRTALLDR 126
            +P+RK DE      GT V VGI PSKV +T+LKLDKDR  +L+R
Sbjct:    1 MPIRKDDEVREKANGTTVHVGIHPSKVVITRLKLDKDRKKILER 44          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A1I8C2N8_MELHA (KOW domain-containing protein n=2 Tax=Meloidogyne TaxID=189290 RepID=A0A1I8C2N8_MELHA)

HSP 1 Score: 51.2 bits (121), Expect = 5.950e-5
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   16 VRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQE 144
            + ++   GT V VGI PSKV LTKLK+DKDR ALL+R +A +E
Sbjct:   84 ITREKANGTTVHVGIHPSKVVLTKLKMDKDRRALLERKAAGRE 126          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A498I2E1_MALDO (Uncharacterized protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498I2E1_MALDO)

HSP 1 Score: 49.3 bits (116), Expect = 7.740e-5
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   10 LPVRKQDE-----------GGTAVQVGIQPSKVELTKLKLDKDRTALLDR 126
            +PVRK DE            G+ V VGI PSKV +TKL+LDKDR +LLDR
Sbjct:    1 MPVRKDDEVHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 50          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA)

HSP 1 Score: 1829 bits (4738), Expect = 0.000e+0
Identity = 1272/1272 (100.00%), Postives = 1272/1272 (100.00%), Query Frame = 1
Query:   22 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDMASKAESADQRNRTVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCHRGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSAIRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFERAPAQRRSRASARPRNPPTIVASVDPNGGWVAMVARGAAGGADTPLWHHTGTLQYRWSAPNDGGGGSGGDAAFEAEAGTRAVAMAHAAGRGFAVLRPIGERGWEEVVATEEEPTSNLKLGAAAARSLVYYRNSATHEARWSLSPRSAFGEGFAAARATRHDGRAVGDASTGGDGERQVELWRGADDVASDTVFYE 3837
            MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDMASKAESADQRNRTVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCHRGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSAIRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFERAPAQRRSRASARPRNPPTIVASVDPNGGWVAMVARGAAGGADTPLWHHTGTLQYRWSAPNDGGGGSGGDAAFEAEAGTRAVAMAHAAGRGFAVLRPIGERGWEEVVATEEEPTSNLKLGAAAARSLVYYRNSATHEARWSLSPRSAFGEGFAAARATRHDGRAVGDASTGGDGERQVELWRGADDVASDTVFYE
Sbjct:    1 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDMASKAESADQRNRTVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCHRGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSAIRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFERAPAQRRSRASARPRNPPTIVASVDPNGGWVAMVARGAAGGADTPLWHHTGTLQYRWSAPNDGGGGSGGDAAFEAEAGTRAVAMAHAAGRGFAVLRPIGERGWEEVVATEEEPTSNLKLGAAAARSLVYYRNSATHEARWSLSPRSAFGEGFAAARATRHDGRAVGDASTGGDGERQVELWRGADDVASDTVFYE 1272          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: D7G8U9_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U9_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 8.520e-68
Identity = 437/1012 (43.18%), Postives = 532/1012 (52.57%), Query Frame = 1
Query:  304 TVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCH----------------------RGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSA--IRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEK---VRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQ--ALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFE 3252
            ++RSF+LNFLE RD SIKKRLDL +HQ E+GR VTDAVVQEV +  P++ GL+LR C  +TD  +W +ARH  A                 LR L +                                              XXXXXXXXXXX                                                 YGD AL+ LGR C +L  L+A GC                       RGCP+LE L+LTGC  +TG +V AL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   IGR F++ LC +                  +  SEPA  +FG QPR ++   + + E   R+  AA V+Q   R  L R R    RR  ++   +   QA+ R +  R WYR WR QV  QR A  +Q  WR L  RR T  +R     R  RG                                                                  L+ EA +           +  +  +R+ +  L  L+A R  +   W  A+++Q  WR R+A+ ++  M+                   LR Q    AAA+TIQSFWRAVR R L+ +Q AL   R+++      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   E ++ LRA+ES+ARPLL + + L   ++A   + RQ       E LRA+   + EEL H   T D YTDSDK++G  QRFLTKFLQVRL EL+A  + +L+ L+    +   K RH  R+LRQ  +EL  +G G  +KV+L R+ R+R++ R+ER  + TIQR FRGWRVRRA+ SW RDYW+  ED ATGD+YY NTW+QE RW KPLEISLFE
Sbjct:  158 SIRSFLLNFLEGRDCSIKKRLDLYVHQTETGRPVTDAVVQEVCKLRPEMIGLSLRNCIEVTDVGMWCIARHTTA-----------------LRELNVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------XXXXXXXXXXXYGDRALIQLGRSCHQLTGLDAFGCSHAQVWLLHVGVITLDPGLLSVARGCPKLEKLMLTGCGGITGKSVRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRALCSMNAQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--IGRRFMAELCHS------------------MKLSEPAQAFFGFQPRKNAKELLAKKEATNRRIIAAIVVQSLMRGRLARGRSSIVRRNWIIKTRLAIAQAIIRGYFVRKWYRAWRAQVREQRAAAAIQATWRMLGDRRTTERLRREKLFRE-RGQSLATRIQAGWWGYRGRVRMVEVRAIRARRLLLEARTQARRELAAIVIQSNLRRLFAQKELLELRRLRDEALERXXXXXXXXXXIQSLARMRQGRAVLAALKARRDLKILEWEMALKVQAAWRGRVAKMMVMTMRI------------------LREQARQNAAAITIQSFWRAVRARHLATIQRALFKIRQMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFECKQHLRALESKARPLLLKLDELT--QNAAKLSERQRFVVTAVEPLRAEHVTIREELFHIRHTTDKYTDSDKINGCRQRFLTKFLQVRLVELKANVEERLEKLDAETIEIEVKERHNTRVLRQTERELIPLGKGTVEKVKLLRTARLRKKARSERSGSITIQRIFRGWRVRRAINSWYRDYWIESEDAATGDVYYVNTWNQEIRWVKPLEISLFE 1091          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A6H5KKL6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL6_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.500e-43
Identity = 171/544 (31.43%), Postives = 226/544 (41.54%), Query Frame = 1
Query: 1717 ALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIR---------DGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEA---EKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRV--------------------RAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFE 3252
            A+ R +  R WYR WR QV  QR A  +Q  WR L  RR T  +R            A R+  G                                                                  L+ EA   EK  Q AA+ V  +  +R+ +  L  L+A R  +   W  A+++Q  WR R+A+ ++  M+                   LR Q    AAA+TIQSFWRAVR R L+ +Q AL   R+++  A+                                               AA+     R V +  +PL                            R    A+ EEL H   T D YTDSDK++G  QRFLTKFLQVRL EL+A  + +L+ L+    +   K RH  R+LRQ  +EL  +G G  +KV+L R+ R+R++V                    R+ER  + TIQR FRGWRVRRA+ SW RDYW+  ED ATGD+YY NTW+QE RW KPLEISLFE
Sbjct:  520 AIIRGYFARKWYRAWRAQVREQRAAAAIQATWRMLGDRRTTERLRREKLFRERGQSLATRIQAGWWGYRSSAPEVIRWDSKHIVLSLLILFAEVASACKRSGLYEPGDYFWRLEHRRLFAQKELLELRR-LRNEALAREKRNQAAALLVQSLARMRQGRAVLAALKARRDLKILEWEMALKVQAAWRGRVAKMMVMTMRI------------------LREQARQKAAAITIQSFWRAVRARHLATIQRALFKIRQMQDGASK--------------------------GECALCVWKGKLKLDELTHNAAKLSERQRFVATAVKPL----------------------------RAEHVAIREELFHIRHTTDKYTDSDKVNGCRQRFLTKFLQVRLVELKANVEERLEKLDAEAIEIEVKERHNTRVLRQTERELIPLGKGTVEKVKLLRTARLRKKVSDSIAFASTDIALGNEHTTARSERSGSITIQRIFRGWRVRRAINSWYRDYWIESEDAATGDVYYVNTWNQEIRWVKPLEISLFE 990          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A7S2RT07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RT07_9STRA)

HSP 1 Score: 147 bits (371), Expect = 7.210e-36
Identity = 85/207 (41.06%), Postives = 129/207 (62.32%), Query Frame = 1
Query: 2629 LRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLF 3249
            L+ VE  A+PL  + E L   +   +A  ++ +  LE  R     L EEL+  +     + D+ +++G PQRFLT++L+VR+ E  A  +A++   +    +   + R  +R++RQVR+EL  +  G A K + +R  R+R RVR E+ A+TTIQRHFRG R+R+A++SW RDYW    D  TGD Y+YNTWS+E RWT+PLE++L 
Sbjct:    7 LKRVEELAKPLYLREEELVQEKKKLAADAQRLKNALEAARKDTDDLREELETMLSVTHKHWDTSRITGTPQRFLTEYLKVRMAEQLAEKEAQIAQDKDRYNELVVQARQRERMIRQVRRELEPLTRGMAVKTKRDRIVRLRNRVRLEKWASTTIQRHFRGHRLRQALFSWYRDYWTEVNDDTTGDTYFYNTWSEEVRWTRPLEMTLL 213          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 5.780e-34
Identity = 66/82 (80.49%), Postives = 80/82 (97.56%), Query Frame = 1
Query:   22 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
            MS+SVEEPLDLIRLSLDER++VKCRG+RELRGKLH+YDQHLN+VLG+VEETVTTVE++E+T EE+V TSKR++EMLFVRGD+
Sbjct:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDV 82          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.280e-33
Identity = 66/82 (80.49%), Postives = 77/82 (93.90%), Query Frame = 1
Query:   22 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
            ++ SVEEPLDLIRLSLDER+YVKCRGDRELRGKLHAYDQHLN+VLG+VEETVTT EI+E+T EE++ TSKR +EMLFVRGD+
Sbjct:   17 VTMSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDV 98          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.090e-33
Identity = 64/82 (78.05%), Postives = 79/82 (96.34%), Query Frame = 1
Query:   22 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
            MS+SV+EPLDLIRLSL+ER+YVKCRG+RELRGKLHA+D+HLN++LGEVEETVTT EI+EET+EE++ TS+R VEMLFVRGD+
Sbjct:    1 MSSSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDV 82          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.710e-33
Identity = 65/79 (82.28%), Postives = 75/79 (94.94%), Query Frame = 1
Query:   31 SVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
            SVEEPLDLIRLSLDER+YVKCRGDRELRGKLHAYDQHLN+VLG+VEETVTT E++E+T EE++ TSKR +EMLFVRGD+
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDV 91          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A7S3M171_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M171_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.090e-32
Identity = 63/79 (79.75%), Postives = 76/79 (96.20%), Query Frame = 1
Query:   31 SVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
            S++ PLDLIRLS+DER++VKC+GDRELRGKLHA+DQHLN+VLGEVEE+VTT EI+EETEEE+V TSKRN+EMLFVRGD+
Sbjct:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGEVEESVTTREIDEETEEEIVKTSKRNIEMLFVRGDI 80          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A7S0G6S6_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S0G6S6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 8.040e-32
Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = 1
Query:   10 HIAAMSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
            ++ A    +EEPLDLIRLS+DERVYVKCRGDRELRGKLHAYDQHLN+VLGEVEETVTT E++EETEEE+V  + R+V+MLFVRGD+
Sbjct:   26 NLLAHEVKMEEPLDLIRLSIDERVYVKCRGDRELRGKLHAYDQHLNMVLGEVEETVTTHEVDEETEEEIVRKATRSVKMLFVRGDI 111          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CDD2_9STRA5.070e-36100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRU4_9STRA1.190e-15100.00KOW domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CNT1_9STRA1.920e-1367.48Translation protein SH3-like domain-containing pro... [more]
A0A6A6L7D5_HEVBR5.160e-660.87Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
G3HPH6_CRIGR4.610e-556.8260S ribosomal protein L26 n=1 Tax=Cricetulus grise... [more]
A0A1I8C2N8_MELHA5.950e-558.14KOW domain-containing protein n=2 Tax=Meloidogyne ... [more]
A0A498I2E1_MALDO7.740e-554.00Uncharacterized protein n=1 Tax=Malus domestica Ta... [more]
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BLAST of jgi.p|Trimin1|354681 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGM1_9STRA0.000e+0100.00WW domain-containing protein n=1 Tax=Tribonema min... [more]
D7G8U9_ECTSI8.520e-6843.18Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A6H5KKL6_9PHAE3.500e-4331.43WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2RT07_9STRA7.210e-3641.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FXS6_ECTSI5.780e-3480.49U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A7S2FJT0_9STRA3.280e-3380.49U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A4D9CUN8_9STRA5.090e-3378.05U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N... [more]
A0A7S2GP21_9STRA6.710e-3382.28U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A7S3M171_9STRA3.090e-3279.75U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]
A0A7S0G6S6_9STRA8.040e-3275.58U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_382contigContig_382:19951..21162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354681|estExt_Genemark1.C_Ctg_3820005
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00177
KEGG Pathwayko03010,map03010
KEGG koko:K02898
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Preferred namerpl26l1
Descriptionribosomal protein
COG categoryJ
Max annot lvl33208|Metazoa
EggNOG OGsCOG0198@1|root,KOG3401@2759|Eukaryota,3A3EZ@33154|Opisthokonta,3BHRB@33208|Metazoa,3CSYU@33213|Bilateria,485Z0@7711|Chordata
Evalue5.03e-06
Seed ortholog7739.XP_002607969.1
Hectar predicted targeting categoryother localisation
TranscriptId355003
TrackFilteredModels1
ProteinId354681
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354681gene_19046Tribonema minus UTEX_B_3156 geneContig_382 19951..21162 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_19046_3exon_19046_3Tribonema minus UTEX_B_3156 exonContig_382 19951..20329 -
exon_19046_2exon_19046_2Tribonema minus UTEX_B_3156 exonContig_382 20434..20582 -
exon_19046_1exon_19046_1Tribonema minus UTEX_B_3156 exonContig_382 21125..21162 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_19046UTR3_19046Tribonema minus UTEX_B_3156 three_prime_UTRContig_382 19951..20207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_19046CDS_19046Tribonema minus UTEX_B_3156 CDSContig_382 21125..21162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354681Trimin1|354681|estExt_Genemark1.C_Ctg_3820005Tribonema minus UTEX_B_3156 polypeptideContig_382 20208..21162 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_19046 ID=mRNA_19046|Name=jgi.p|Trimin1|354681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=566bp|location=Sequence derived from alignment at Contig_382:19951..21162- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCGCTGCCTGTGCGCAAGCAGGACGAGGGAGGCACTGCCGTGCA
GGTCGGCATCCAGCCCTCCAAGGTCGAGCTCACCAAGCTCAAGCTCGACA
AGGACCGCACCGCGCTGCTGGACCGCGGAAGCGCAAGGCAAGAAGAAAGG
TCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCGCCGACGGGGGGCAATGA
GGGGGGCGCGCAGGGCGCTGCGGCGGCGGCGGGTGCGGAGTGGGACGAGC
TTGTTGTGGTGGAGGTGGATGGCGACGACGGCGACAGCGACATCGAGATG
GAGGAGTGAGCGGATCCTTGGACCGCGCCCGCTCGCGTAGAAGTGCGATA
AAGCTGATGAAGACGCGGGCATTGCGACGAGCATACAAGCGCGCACGAAC
GAACGGCACTGCTGTCGCGGCGCCATCCTGCGCAGGCGTCTGTGCCATAG
GCCCAGAAGGGGGGGGGGTGCTGGCCAGGCACATTTCCCGGCATGTAAGA
AGCGTGGTTGCAGAGCGCGTTGCTGAGCTCTGTACCCATATGTAAATCAA
TGATTTGTGATCGGTG
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protein sequence of jgi.p|Trimin1|354681

>Trimin1|354681|estExt_Genemark1.C_Ctg_3820005 ID=Trimin1|354681|estExt_Genemark1.C_Ctg_3820005|Name=jgi.p|Trimin1|354681|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=103bp
MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEER
SPPPPPPPPPPPTGGNEGGAQGAAAAAGAEWDELVVVEVDGDDGDSDIEM
EE*
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mRNA from alignment at Contig_382:19951..21162-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_19046 ID=mRNA_19046|Name=jgi.p|Trimin1|354681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1212bp|location=Sequence derived from alignment at Contig_382:19951..21162- (Tribonema minus UTEX_B_3156 )
ATGCTGTCGCTGCCTGTGCGCAAGCAGGACGAGGGAGGGTCCTGAAGGGG CACTTCAAGGGCCGCGAGGGGAAGGTGCTCGCCTGCTACCGCAGCAAGTA CATCATTCACATCGAGGGTTGCGTTCGGGAAAAGGCCACCGGTGAGTCCC ACGGTCATGTGTGGTGCGAGTCTGCAGCCACGTCCGACTTCACGTGCATT GCGTTATGTGTGTATGTGTTGTTGTGCCAAAAATTCGCGTCTTGGCTTTT TCATCCGGCAAAGCGCCGCTTCAGAAGCTTTCTGCAAGTAGCGTGATAGG GGGTTTATAGCAGGGCAAGCACCTTCTGGTCGCCAGCAATGCCGATCATC TGCATCATTGGTCACTGTGGACAGCAGACAGCCAGAGTCGGTATGCCACA CCGCCGCGCGCTTTGCGATATGCGGCCGCAAGTCACGCGCCGCATGCCGC CGCAGCACCGCATATCGCCAACTCTCTCATGCACAAAGAAGCCTGTACTG CACTAGCAGTGGCAGCACGGCGCGCGCGTCACACGCTTCCGCACGCTGCG CCGCCGCCGCCGCCGCCGCTGCTGCGCGAGCACTGCCGTGCAGGTCGGCA TCCAGCCCTCCAAGGTCGAGCTCACCAAGCTCAAGCTCGACAAGGACCGC ACCGCGCTGCTGGACCGCGGAAGCGCAAGGCAAGAAGAAAGGTCGCCGCC GCCGCCGCCGCCGCCGCCGCCCCCGCCGAGTGCTGCTGCCGCCGCCGCGC GCCGCGCACGCTCGCGCCGCCGCGCCGCGGCGCCCGCTGCGGCCGCGCGG CTGCGGATGCGGGCGCCGGCGCCGCGATCGCAGCGGGGGGCAATGAGGGG GGCGCGCAGGGCGCTGCGGCGGCGGCGGGTGCGGAGTGGGACGAGCTTGT TGTGGTGGAGGTGGATGGCGACGACGGCGACAGCGACATCGAGATGGAGG AGTGAGCGGATCCTTGGACCGCGCCCGCTCGCGTAGAAGTGCGATAAAGC TGATGAAGACGCGGGCATTGCGACGAGCATACAAGCGCGCACGAACGAAC GGCACTGCTGTCGCGGCGCCATCCTGCGCAGGCGTCTGTGCCATAGGCCC AGAAGGGGGGGGGGTGCTGGCCAGGCACATTTCCCGGCATGTAAGAAGCG TGGTTGCAGAGCGCGTTGCTGAGCTCTGTACCCATATGTAAATCAATGAT TTGTGATCGGTG
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Coding sequence (CDS) from alignment at Contig_382:19951..21162-

>mRNA_19046 ID=mRNA_19046|Name=jgi.p|Trimin1|354681|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=309bp|location=Sequence derived from alignment at Contig_382:19951..21162- (Tribonema minus UTEX_B_3156 )
ATGCTGTCGCTGCCTGTGCGCAAGCAGGACGAGGGAGGCACTGCCGTGCA
GGTCGGCATCCAGCCCTCCAAGGTCGAGCTCACCAAGCTCAAGCTCGACA
AGGACCGCACCGCGCTGCTGGACCGCGGAAGCGCAAGGCAAGAAGAAAGG
TCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCGCCGACGGGGGGCAATGA
GGGGGGCGCGCAGGGCGCTGCGGCGGCGGCGGGTGCGGAGTGGGACGAGC
TTGTTGTGGTGGAGGTGGATGGCGACGACGGCGACAGCGACATCGAGATG
GAGGAGTGA
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