mRNA_19003 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135815
Unique NamemRNA_19003
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135815 vs. uniprot
Match: A0A835YSQ1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSQ1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 6.370e-20
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 
Query:    1 GNARVCEHGRQRYYCGPCGGGGXXXXXXXXXXXXXXXXXXXXXXXRDIGXXXXXXXXXXXXXXXXRGSTQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHPGRLCEHGRQRYYCGPCGGAGI 456
            GNARVCEHGRQRYYCGPCGGGGXXXXXXXXXXXXXXXXXXXXXXXRDIGXXXXXXXXXXXXXXXXRGSTQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHPGRLCEHGRQRYYCGPCGGAGI
Sbjct:    1 GNARVCEHGRQRYYCGPCGGGGXXXXXXXXXXXXXXXXXXXXXXXRDIGXXXXXXXXXXXXXXXXRGSTQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHPGRLCEHGRQRYYCGPCGGAGI 152
[Close]
BLAST of jgi.p|Trimin1|135815 vs. uniprot
Match: A0A835ZAE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAE2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.490e-5
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 1 
Query:    1 GNARVCEHGRQRYYCGPCGGGG 66
            GNARVCEHGRQRYYCGPCGGGG
Sbjct:  103 GNARVCEHGRQRYYCGPCGGGG 124
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135815 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YSQ1_9STRA6.370e-20100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZAE2_9STRA2.490e-5100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_412contigContig_412:12113..16309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135815|gw1.412.2.1
Hectar predicted targeting categoryother localisation
TranscriptId136137
TrackFilteredModels1
ProteinId135815
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135815gene_19003Tribonema minus UTEX_B_3156 geneContig_412 12113..16309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135815Trimin1|135815|gw1.412.2.1Tribonema minus UTEX_B_3156 polypeptideContig_412 12113..16309 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_19003_7exon_19003_7Tribonema minus UTEX_B_3156 exonContig_412 12113..12236 -
exon_19003_6exon_19003_6Tribonema minus UTEX_B_3156 exonContig_412 13083..13145 -
exon_19003_5exon_19003_5Tribonema minus UTEX_B_3156 exonContig_412 13800..13853 -
exon_19003_4exon_19003_4Tribonema minus UTEX_B_3156 exonContig_412 14636..14810 -
exon_19003_3exon_19003_3Tribonema minus UTEX_B_3156 exonContig_412 15076..15221 -
exon_19003_2exon_19003_2Tribonema minus UTEX_B_3156 exonContig_412 16022..16087 -
exon_19003_1exon_19003_1Tribonema minus UTEX_B_3156 exonContig_412 16173..16309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_19003CDS_19003Tribonema minus UTEX_B_3156 CDSContig_412 16173..16309 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_19003 ID=mRNA_19003|Name=jgi.p|Trimin1|135815|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=765bp|location=Sequence derived from alignment at Contig_412:12113..16309- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCAACGCGCGCGTGTGCGAGCACGGGCGGCAGCGCTACTACTGCGGGCC
GTGCGGCGGGGGGGGGATCTGCGAGCACGGGCGGCGCCGCGCGCAGTGCA
AGCCGTGCGGCGGGTCGAGCCTGTGTAGCCACGGCAGAGACATCGGTCGG
CGCCGCGCGCAGCGCAAGCCGTGCGGCAGGTCGAGCCTGTGCAGCCGCGG
CAGCACGCAGCGGCGGCGCCGGCGCCGCCGCTGCTGGTCCACAGCCTCGT
GCAGCCGCCGCCGGCAGCGGAGCAGGCGGCGGCGGCGGCAGCGGCGGCGC
AGCAGCAGCAGCACGTGCCCGCGCTCGCGCCGACGGCGCCGCAGCACCAC
GCACTGCGGCGGCGCGCGAGGGGGGCGGCGGCGCCAACACCCCGGGCGCC
TGTGCGAGCACGGGCGGCAGCGCTACTACTGCGGGCCGTGCGGCGGCGCG
GGAATCTGCGAGCACGGCCGGCGCAAGTCGCAGTGCAAGCAGTGCGGCGG
GACGAGCCTGTGCAGCCACGGAAGGATGCGGTACCGGTGCGCTGACTGCA
AGGGCTCCTCCATGTGCCACCACGGACGTCTGCGCTACTTCTGCAAGGAC
TGCGGGGGAAGGGGCGTGTGCACCCACGGCCGTCAGCGCAGGTACTGCAG
GGAGTGCGGCGGCTCGTCCATGTGCCACCACGGCAAGCGCCGCAACAACT
GCAAGGAGTGCGGCGGCAGCCAGGTGTGCGAGCACAGCAAGCAGTACTCG
CGCTGCAAGGAGTGC
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protein sequence of jgi.p|Trimin1|135815

>Trimin1|135815|gw1.412.2.1 ID=Trimin1|135815|gw1.412.2.1|Name=jgi.p|Trimin1|135815|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=255bp
GNARVCEHGRQRYYCGPCGGGGICEHGRRRAQCKPCGGSSLCSHGRDIGR
RRAQRKPCGRSSLCSRGSTQRRRRRRRCWSTASCSRRRQRSRRRRRQRRR
SSSSTCPRSRRRRRSTTHCGGARGGRRRQHPGRLCEHGRQRYYCGPCGGA
GICEHGRRKSQCKQCGGTSLCSHGRMRYRCADCKGSSMCHHGRLRYFCKD
CGGRGVCTHGRQRRYCRECGGSSMCHHGKRRNNCKECGGSQVCEHSKQYS
RCKEC
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mRNA from alignment at Contig_412:12113..16309-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_19003 ID=mRNA_19003|Name=jgi.p|Trimin1|135815|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4197bp|location=Sequence derived from alignment at Contig_412:12113..16309- (Tribonema minus UTEX_B_3156 )
GGCAACGCGCGCGTGTGCGAGCACGGGCGGCAGCGCTACTACTGCGGGCC
GTGCGGCGGGGGGGGGATCTGCGAGCACGGGCGGCGCCGCGCGCAGTGCA
AGCCGTGCGGCGGGTCGAGCCTGTGTAGCCACGGCAGGTGAGTGAGGCAT
CACGTGTGCGCGTATCGTGCACGCTGAAGGTGGAGGCAGAATAAAACAAA
GGAAACAGAAAATAAATGTTAGAGACATCGGTCGGCGCCGCGCGCAGCGC
AAGCCGTGCGGCAGGTCGAGCCTGTGCAGCCGCGGCAGGTGAGGGAGGCG
TCATACGTGCGTATCATGCACGCTGCGGAAGCTGGAGGCAGAATCAAAGG
GAAATTTGAACAAAATTATGAATGAAAATGACTTATCTGTATGTTCTATG
CAGCGCTTACGGCGTGTGGGCCGTCTGCTGAAGGACGCGAGCTTTTTTCA
AAAGCCTGCCTGTGGGTCATGATGAGCACATGACGTGACGTCATGCGTGC
TGCATGCGCGTCGCGCGCGCGAGTGTCTGGTTTGAATTGGATGTGTCGCC
ACAGCGGCGCTTGGTATCTATTCTTTGGCTTGCAGCAGCACCTGAGACGG
AGGTATCCTGTTGTAACATGTATGGGTTGGTGGAACAATATGACAAAAAG
CCTGGTGCAGATATGGCTGAAGTACAGCGTTACATTGGGTTCATTGCTCG
CATATGCGCGTAGCAATTTTGCAGTGGTAAATGCCATGCAGTGTGATGCC
GGCAGCAGCACACGCGGAGCTCTCTGCATGGTGCAGACGCGCCCCTGCAC
CCCGGCTCCTCTTGACCGCTGTCAGTCTGTACACCATTCATGTCATAACA
CCAGCCTGAGACCGCAACAACTTCATTGCGCTTTCGTCGGTGTCGCCCGC
GCGGAGCAAGCAGGTTGCGCTACCGCTGCAAAGAGTGCTCCGGCCCGGCG
GCGGAAGCCGGCGACGATCAGCCGCAGCCGGACGGCGGCCAATCGGACGC
GCCGCCCGACCAACCGCAGGCAATGCCGCTGCAGCAGCTAGACGCGCAAG
TCGCCGGCGCCCTGCACCCTGTGTCGCAGCCGCCACAGCACGCAGCGGCG
GCGCCGGCGCCGCCGCTGCTGGTCCACAGCCTCGTGCAGCCGCCGCCGGC
AGCGGAGCAGGCGGCGGCGGCGGCAGCGGCGGCGCAGCAGCAGCAGCACG
TGCCCGCGCTCGCGCCGACGGCGCCGCAGCACCAGTTCGTCGCGCAGGGC
CCGCTGACACAGGTCGCGCTCGTGCAGCAGGCGCTGTCGGGCACGCCGAT
GCCCGCGCCGCCGCCGCAGGCGCTCGAGCTCCTGCAGCCGCCGCTGCTGC
CGCACCAGTTCCACCAGCCGCTCACGCTGCAGCCGCCAGGCGCGCTGCCG
CCGCCGCCGCCGCTTACCCTGGGCCCCGACGGCCAGCCGCTGCCGCCGAT
GGACAAGGTGGCGCTGGCGCCGTCGCCGGCGGCGGCGGCGCGCGCGAAGC
GCACTGCGGCGGCGCGCGAGGGGGGCGGCGGCGCCAACACCCCGGGCGCC
TGTGCGAGCACGGGCGGCAGCGCTACTACTGCGGGCCGTGCGGCGGCGCG
GGAATCTGCGAGCACGGCCGGCGCAAGTCGCAGTGCAAGCAGTGCGGCGG
GACGAGCCTGTGCAGCCACGGAAGGTGGGTGTGCGCGTGCGCACGCGCAC
GCGCATGCTGCCGTTCGTGTCGCCGCTTCTGATAATTGTTACTAGCCAGA
TAAAGCAGCTGAACTCGTCTAGCTCTGTGCGGAAGCACAGAATTTTGCTC
TTGTTTTCTGAATGGGGTCAGATGTTGGTTAGCGCGACGGGCTGTGCTGC
TCTCAGTGCTGGTCTGGGCGCTTCTCGTGCTGCGTCCTACAGCAGAGCCT
AGCATGCGCTGCGCGTATAAGCCAGCGCCTGCGTGCCCTGTGTGTTTACG
GAGCTGGCAAGTTCAAGCGGTAATCTGGGTGCGCTGCCCTGTCGTGCGCT
CTCAAGTTGGAGCACAAGCTACGACACAGCGGCGGCGTGCACCTGCACTT
GCTTCGTATGTGCTTGTGCGTGCAGCAGGCGACATTCTTTCGCCTGCACC
ATGCCCCTTATTGTCAGGCATTTTTGATGATGAGGCGGGTTGAGCACATT
GAACTGGCGCCGCCACAGCGAGCGCGCGATGCGCCCGGGGCAGGCGAATG
AGGGCGACGCAACCGTTCGCCGGACATCAGCAGCCGCGCCATTGCTCAGC
GACCTGCGTCAGTGCTCAGCAAATGCGCGTCATTGCACTGGGGCGGAATA
GCGCTTGCTGGCCGACTGCGATTGCATCCTTGCTGAGCACCTGCGACGCT
GCTCTCAGACAGCATGCGCCAGGCCACGTGCGCCAACAAGAAGCGCTATA
CTGAGTGGCATACTGACGGGTTTGCTGCTGCTGCTGCGCGCCTCCTTCAA
ACGCAGGATGCGGTACCGGTGCGCTGACTGCAAGGGCTCCTCCATGTGCC
ACCACGGACGGTGAGAGCGCCAGCTCTGTCTGTGCACCGCAAGGCTTCAG
TTGAACTGGAGCCCTGACTTGCTGCTCCAAGTGCAGTTTCACGCCAGCGT
CAGCATTGCCGTCATGAGTTTGTGTTGTTATTGCATACTGTGGTGTCATG
CCATTGGCCCATAGCACCTCAACATCGTAGCATTGATGCAGCCAGGCTGG
TGACACCCTCGCAGCATACTTGTAAACTTTGCTGCTTTTTTGAACGCGAT
CGACTAGTGGATGATTTTCAGTGGTACTGTTAATTGTGCCCTGACGCGTC
TCCTACATGTGCTACATGTGGGTGCTCGTTGCAGCCAGCATAATGGTGCC
GCTGCAGTCATAGGTATACCGGCTTTTTCCAGCATGACAATGAGATGCAA
ATGTTGGTTGCAGCGTTGGACAGAGGCATATTGTATCGACTGCCGATCCG
ACACAAGTACACATCGACGACAACAACATCTCAAAGTTGAAATGAGAATC
GATGTTTATCCAGCATCCAGCGTCATGGGCCAGGTCTGGCAGCCCAGCGC
TCAAGTTGAAGTTTGACCCAATGTTGCCAACTCGATTGCCCCGTGCATGA
CTCAATAATTAAACTCATGTGCCTCTTACCTTGGTTCTGATTGTGTCTGT
CGATGCCGTGCCAGTCTGCGCTACTTCTGCAAGGACTGCGGGGGAAGGGG
CGTGTGCACCCACGGCCGTCAGCGCAGGTATGTAGCCGTACGGTATGGGT
ATGTAGGTATGCTATAGGGCCAGCGCGTAGGTAAGTATGGCATACAGTAT
GGGTATGTAGGTGTGATGTTGGGGCCGCTCGCATTGCTTTGCTGCCAGAA
TGCGGGTGGCGACACTGTGGTGCGTCACCTGCTGTACTTGAATTCCTGAA
GTTGTGTACAGTTTCGGTGGCTGCGGCACTGTCATCGCACACCTATCGCA
GGAAGGCATGTAGCTTGTGTGTTTCAGTCCTGCTCTACTGTTCATTGAAG
TGCTGGCTTTTTTGTGGCTGAGTCACCATGAGAGACTATGCAAGGACTGC
AACATTCAACTTGTGATGATCTGAATGCCACGCCGTCTCATTGGCGTTGA
AAATGGCACAACGACCAACGTGCTGCTTGCAATCCTCATTCAACGCGCAT
TTGAGCTCAGTCAATTGACACAAGAGCATCATTGTGTTATGTGTCAACGC
GTCGCTGCTGACGATATGGCGCCATAGATCAACGTGGAGGCACGAACGCC
TGCCCTCTTGCGCGCCGCCCCCCCCGCCATGTACTGCATGCAGCTTGCAC
CAGTCATCTGACGTGCTTCTGTCTGCCAGCGCAGCGCCTGCCTTCCCAGC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGCACTCC
CCCCAGGTACTGCCGGGAGTGCGGCGGCGCGTCCACGAGCTGCCCGCCCG
CCTTCGCACGCGCCCCCCCCTCCTCCCGCCTCCCAGATACTGCTGGCTGT
TTGCACTTGTCATCTGACGCGCTTCTGATGCATCCACGCGCCGCCCCTGT
TACCGCGCGCCGCCCTCCCCCAGGTACTGCAGGGAGTGCGGCGGCTCGTC
CATGTGCCACCACGGCAAGCGCCGCAACAACTGCAAGGAGTGCGGCGGCA
GCCAGGTGTGCGAGCACAGCAAGCAGTACTCGCGCTGCAAGGAGTGC
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Coding sequence (CDS) from alignment at Contig_412:12113..16309-

>mRNA_19003 ID=mRNA_19003|Name=jgi.p|Trimin1|135815|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=765bp|location=Sequence derived from alignment at Contig_412:12113..16309- (Tribonema minus UTEX_B_3156 )
GGCAACGCGCGCGTGTGCGAGCACGGGCGGCAGCGCTACTACTGCGGGCC
GTGCGGCGGGGGGGGGATCTGCGAGCACGGGCGGCGCCGCGCGCAGTGCA
AGCCGTGCGGCGGGTCGAGCCTGTGTAGCCACGGCAGAGACATCGGTCGG
CGCCGCGCGCAGCGCAAGCCGTGCGGCAGGTCGAGCCTGTGCAGCCGCGG
CAGCACGCAGCGGCGGCGCCGGCGCCGCCGCTGCTGGTCCACAGCCTCGT
GCAGCCGCCGCCGGCAGCGGAGCAGGCGGCGGCGGCGGCAGCGGCGGCGC
AGCAGCAGCAGCACGTGCCCGCGCTCGCGCCGACGGCGCCGCAGCACCAC
GCACTGCGGCGGCGCGCGAGGGGGGCGGCGGCGCCAACACCCCGGGCGCC
TGTGCGAGCACGGGCGGCAGCGCTACTACTGCGGGCCGTGCGGCGGCGCG
GGAATCTGCGAGCACGGCCGGCGCAAGTCGCAGTGCAAGCAGTGCGGCGG
GACGAGCCTGTGCAGCCACGGAAGGATGCGGTACCGGTGCGCTGACTGCA
AGGGCTCCTCCATGTGCCACCACGGACGTCTGCGCTACTTCTGCAAGGAC
TGCGGGGGAAGGGGCGTGTGCACCCACGGCCGTCAGCGCAGGTACTGCAG
GGAGTGCGGCGGCTCGTCCATGTGCCACCACGGCAAGCGCCGCAACAACT
GCAAGGAGTGCGGCGGCAGCCAGGTGTGCGAGCACAGCAAGCAGTACTCG
CGCTGCAAGGAGTGC
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