mRNA_18999 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A836CE35_9STRA (Chitin-binding type-4 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE35_9STRA) HSP 1 Score: 312 bits (800), Expect = 4.460e-108 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 Query: 1 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 441 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC Sbjct: 1 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 147
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A836CFM7_9STRA (Chitin-binding type-1 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM7_9STRA) HSP 1 Score: 294 bits (753), Expect = 1.040e-97 Identity = 141/147 (95.92%), Postives = 141/147 (95.92%), Query Frame = 1 Query: 1 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 441 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIR ATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC Sbjct: 57 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIR------ATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 197
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A835ZDH4_9STRA (Chitin-binding type-4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH4_9STRA) HSP 1 Score: 161 bits (407), Expect = 2.760e-47 Identity = 80/148 (54.05%), Postives = 100/148 (67.57%), Query Frame = 1 Query: 1 YCQQCGNGLGNRSGGTYPPGICGDPFQGT-SSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 441 Y GNG G PGICGDPFQG ++NFAG GPI+ ATY+ G T+ V LTANHGG+ +K+CP +SATQSCF++ LKR DTG T+YW+ TG+Y S ++ Y+LPAGV+C+NGCLLQWEY AMQSC+ C Sbjct: 39 YDDMSGNGAGLNVVFNSNPGICGDPFQGVPTTNFAGAIGPIQ------ATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENC 180
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A383VMG1_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VMG1_TETOB) HSP 1 Score: 140 bits (354), Expect = 4.760e-36 Identity = 74/139 (53.24%), Postives = 91/139 (65.47%), Query Frame = 1 Query: 16 GNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCV 432 GNGLG G T PG+CGDPFQGT+SNF P PI+ ATY+QG + + ILTANHGG+F ++CP SSS ++CF SN L R D G TD W++T YS+ Y LPAG++C GC+LQW Y AMQSCV Sbjct: 3 GNGLG--FGNTNGPGVCGDPFQGTNSNFIMQPSPIQ------ATYTQGGVIGLSVILTANHGGKFSFRVCPR-SSSLDEACFGSNFLTRVDNGQTDTWIMTSQMD----YSLTYQLPAGISCDGGCVLQWRYFAMQSCV 128
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A7J7QNS7_9CHLO (Glycoside hydrolase superfamily n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QNS7_9CHLO) HSP 1 Score: 136 bits (343), Expect = 1.170e-34 Identity = 73/139 (52.52%), Postives = 90/139 (64.75%), Query Frame = 1 Query: 16 GNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCV 432 GNGLG SG T PG+CGDPFQGTSS+F P PI+ ATYSQG + + A LTAN GG+F ++CP SSS ++CF +N L R D G D W++T Y+M Y LPAG++C GC+LQW Y AMQSCV Sbjct: 3 GNGLG-LSGSTSGPGVCGDPFQGTSSSFVTAPSPIQ------ATYSQGAVITLNAFLTANLGGKFSFRVCPR-SSSLDEACFGTNYLTRVDNGQRDTWIMTPQMD----YTMAYQLPAGISCEGGCVLQWRYFAMQSCV 129
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A383WL23_TETOB (Chitin-binding type-4 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WL23_TETOB) HSP 1 Score: 125 bits (313), Expect = 2.700e-32 Identity = 63/139 (45.32%), Postives = 86/139 (61.87%), Query Frame = 1 Query: 16 GNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCV 432 GNGLG G T G+CGDPFQ T+SNF P P++ ATY +G ++++ ILT NHGG+F ++CP +CF SN L R D G DYW+ + + ++M+Y LPAG+ C GC+LQWEY +MQSC+ Sbjct: 48 GNGLGQ--GNTQGLGVCGDPFQTTNSNFINEPSPVQ------ATYKEGSVIELKVILTTNHGGKFSFRVCPR-RRDLDAACFGSNYLTRVDNGQRDYWI----FDIAAEHTMRYKLPAGITCEAGCVLQWEYYSMQSCI 173
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A383W0D0_TETOB (Endoglucanase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W0D0_TETOB) HSP 1 Score: 99.4 bits (246), Expect = 2.150e-21 Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1 Query: 142 ATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQ 438 A Y+QGQT++++ +LT+NHGG+F ++CP + T +CF SN L R D G D WL + + MQY LPA V+C NGC+LQW + +MQSCV Q Sbjct: 13 ANYTQGQTIEIRVLLTSNHGGKFNFRICPR-QTDLTDACFGSNYLTRVDNGQRDTWLTS-----QDNWVMQYRLPADVSCPNGCVLQWWWMSMQSCVEQ 105
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A7J7Q3S1_9CHLO (Endoglucanase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q3S1_9CHLO) HSP 1 Score: 96.3 bits (238), Expect = 2.670e-20 Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1 Query: 142 ATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQ 438 A Y+QGQ ++++ +LT+NHGG+F ++C D S+ +CF SN L R D G D WL + + MQY LPA ++C+NGC+LQW + +MQSCV Q Sbjct: 1310 ANYTQGQVIEIKVLLTSNHGGKFNFRIC-DRQSNLDDACFGSNYLTRVDNGQRDTWLTS-----QDNWVMQYRLPADISCANGCVLQWWWMSMQSCVEQ 1402
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A2J7ZS05_9CHLO (Chitin-binding type-4 domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZS05_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 2.810e-19 Identity = 57/154 (37.01%), Postives = 78/154 (50.65%), Query Frame = 1 Query: 1 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFD--SNTLKR-----KDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 441 YC+ CG G G+ PP ICG+PFQG+ P G AT+ GQ V + L+ANHGGR +++CP S +CF +N L+R K G YW L S + + LPAGV+C+ GC+LQW + Q+C + C Sbjct: 45 YCEHCGQGNGS------PPDICGNPFQGSPGVNFTDPSWFDGY---KATWVSGQVVSITIYLSANHGGRMSMRLCPRDRFSLYPTCFSEAANQLRRVSDDPKYNGKV-YWYLKPS---DTEITQSFRLPAGVSCAGGCVLQWWWVGYQNCYLGC 185
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: UPI001458EE6E (mucin-5AC-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458EE6E) HSP 1 Score: 85.1 bits (209), Expect = 1.140e-16 Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1 Query: 58 GICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPD--VSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEY 411 GICGDP+ G N AGG K Y +GQT+D+ +TANH G F ++CP+ V +ATQ C D + L+ D T Y++ + D Y M+Y LP G+AC+ C+LQW++ Sbjct: 69 GICGDPYNGDRLNEAGGKYATGLITRK---YLEGQTIDIDVQVTANHLGWFEFRICPNNNVKKAATQKCLDQHVLQLADRSGTKYYISS----DVGHYKMKYTLPTGLACTQ-CVLQWKW 180 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18999 ID=mRNA_18999|Name=jgi.p|Trimin1|129658|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_368:1697..2448- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TACTGTCAGCAGTGTGGCAATGGGCTCGGCAACAGAAGCGGTGGTACGTAback to top protein sequence of jgi.p|Trimin1|129658 >Trimin1|129658|gw1.368.1.1 ID=Trimin1|129658|gw1.368.1.1|Name=jgi.p|Trimin1|129658|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYback to top mRNA from alignment at Contig_368:1697..2448- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18999 ID=mRNA_18999|Name=jgi.p|Trimin1|129658|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=752bp|location=Sequence derived from alignment at Contig_368:1697..2448- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_368:1697..2448- >mRNA_18999 ID=mRNA_18999|Name=jgi.p|Trimin1|129658|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_368:1697..2448- (Tribonema minus UTEX_B_3156 )back to top |