mRNA_18999 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129658
Unique NamemRNA_18999
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A836CE35_9STRA (Chitin-binding type-4 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE35_9STRA)

HSP 1 Score: 312 bits (800), Expect = 4.460e-108
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
Query:    1 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 441
            YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC
Sbjct:    1 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 147          
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A836CFM7_9STRA (Chitin-binding type-1 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM7_9STRA)

HSP 1 Score: 294 bits (753), Expect = 1.040e-97
Identity = 141/147 (95.92%), Postives = 141/147 (95.92%), Query Frame = 1
Query:    1 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 441
            YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIR      ATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC
Sbjct:   57 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIR------ATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 197          
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A835ZDH4_9STRA (Chitin-binding type-4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH4_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.760e-47
Identity = 80/148 (54.05%), Postives = 100/148 (67.57%), Query Frame = 1
Query:    1 YCQQCGNGLGNRSGGTYPPGICGDPFQGT-SSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 441
            Y    GNG G        PGICGDPFQG  ++NFAG  GPI+      ATY+ G T+ V   LTANHGG+  +K+CP   +SATQSCF++  LKR DTG T+YW+ TG+Y  S   ++ Y+LPAGV+C+NGCLLQWEY AMQSC+  C
Sbjct:   39 YDDMSGNGAGLNVVFNSNPGICGDPFQGVPTTNFAGAIGPIQ------ATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENC 180          
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A383VMG1_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VMG1_TETOB)

HSP 1 Score: 140 bits (354), Expect = 4.760e-36
Identity = 74/139 (53.24%), Postives = 91/139 (65.47%), Query Frame = 1
Query:   16 GNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCV 432
            GNGLG   G T  PG+CGDPFQGT+SNF   P PI+      ATY+QG  + +  ILTANHGG+F  ++CP  SSS  ++CF SN L R D G TD W++T        YS+ Y LPAG++C  GC+LQW Y AMQSCV
Sbjct:    3 GNGLG--FGNTNGPGVCGDPFQGTNSNFIMQPSPIQ------ATYTQGGVIGLSVILTANHGGKFSFRVCPR-SSSLDEACFGSNFLTRVDNGQTDTWIMTSQMD----YSLTYQLPAGISCDGGCVLQWRYFAMQSCV 128          
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A7J7QNS7_9CHLO (Glycoside hydrolase superfamily n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QNS7_9CHLO)

HSP 1 Score: 136 bits (343), Expect = 1.170e-34
Identity = 73/139 (52.52%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   16 GNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCV 432
            GNGLG  SG T  PG+CGDPFQGTSS+F   P PI+      ATYSQG  + + A LTAN GG+F  ++CP  SSS  ++CF +N L R D G  D W++T        Y+M Y LPAG++C  GC+LQW Y AMQSCV
Sbjct:    3 GNGLG-LSGSTSGPGVCGDPFQGTSSSFVTAPSPIQ------ATYSQGAVITLNAFLTANLGGKFSFRVCPR-SSSLDEACFGTNYLTRVDNGQRDTWIMTPQMD----YTMAYQLPAGISCEGGCVLQWRYFAMQSCV 129          
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A383WL23_TETOB (Chitin-binding type-4 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WL23_TETOB)

HSP 1 Score: 125 bits (313), Expect = 2.700e-32
Identity = 63/139 (45.32%), Postives = 86/139 (61.87%), Query Frame = 1
Query:   16 GNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCV 432
            GNGLG   G T   G+CGDPFQ T+SNF   P P++      ATY +G  ++++ ILT NHGG+F  ++CP        +CF SN L R D G  DYW+    +  +  ++M+Y LPAG+ C  GC+LQWEY +MQSC+
Sbjct:   48 GNGLGQ--GNTQGLGVCGDPFQTTNSNFINEPSPVQ------ATYKEGSVIELKVILTTNHGGKFSFRVCPR-RRDLDAACFGSNYLTRVDNGQRDYWI----FDIAAEHTMRYKLPAGITCEAGCVLQWEYYSMQSCI 173          
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A383W0D0_TETOB (Endoglucanase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W0D0_TETOB)

HSP 1 Score: 99.4 bits (246), Expect = 2.150e-21
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  142 ATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQ 438
            A Y+QGQT++++ +LT+NHGG+F  ++CP   +  T +CF SN L R D G  D WL +        + MQY LPA V+C NGC+LQW + +MQSCV Q
Sbjct:   13 ANYTQGQTIEIRVLLTSNHGGKFNFRICPR-QTDLTDACFGSNYLTRVDNGQRDTWLTS-----QDNWVMQYRLPADVSCPNGCVLQWWWMSMQSCVEQ 105          
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A7J7Q3S1_9CHLO (Endoglucanase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q3S1_9CHLO)

HSP 1 Score: 96.3 bits (238), Expect = 2.670e-20
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  142 ATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQ 438
            A Y+QGQ ++++ +LT+NHGG+F  ++C D  S+   +CF SN L R D G  D WL +        + MQY LPA ++C+NGC+LQW + +MQSCV Q
Sbjct: 1310 ANYTQGQVIEIKVLLTSNHGGKFNFRIC-DRQSNLDDACFGSNYLTRVDNGQRDTWLTS-----QDNWVMQYRLPADISCANGCVLQWWWMSMQSCVEQ 1402          
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: A0A2J7ZS05_9CHLO (Chitin-binding type-4 domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZS05_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 2.810e-19
Identity = 57/154 (37.01%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFD--SNTLKR-----KDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 441
            YC+ CG G G+      PP ICG+PFQG+       P    G     AT+  GQ V +   L+ANHGGR  +++CP    S   +CF   +N L+R     K  G   YW L  S       +  + LPAGV+C+ GC+LQW +   Q+C + C
Sbjct:   45 YCEHCGQGNGS------PPDICGNPFQGSPGVNFTDPSWFDGY---KATWVSGQVVSITIYLSANHGGRMSMRLCPRDRFSLYPTCFSEAANQLRRVSDDPKYNGKV-YWYLKPS---DTEITQSFRLPAGVSCAGGCVLQWWWVGYQNCYLGC 185          
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Match: UPI001458EE6E (mucin-5AC-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458EE6E)

HSP 1 Score: 85.1 bits (209), Expect = 1.140e-16
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   58 GICGDPFQGTSSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPD--VSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEY 411
            GICGDP+ G   N AGG         K   Y +GQT+D+   +TANH G F  ++CP+  V  +ATQ C D + L+  D   T Y++ +    D   Y M+Y LP G+AC+  C+LQW++
Sbjct:   69 GICGDPYNGDRLNEAGGKYATGLITRK---YLEGQTIDIDVQVTANHLGWFEFRICPNNNVKKAATQKCLDQHVLQLADRSGTKYYISS----DVGHYKMKYTLPTGLACTQ-CVLQWKW 180          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129658 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CE35_9STRA4.460e-108100.00Chitin-binding type-4 domain-containing protein (F... [more]
A0A836CFM7_9STRA1.040e-9795.92Chitin-binding type-1 domain-containing protein n=... [more]
A0A835ZDH4_9STRA2.760e-4754.05Chitin-binding type-4 domain-containing protein n=... [more]
A0A383VMG1_TETOB4.760e-3653.24Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7J7QNS7_9CHLO1.170e-3452.52Glycoside hydrolase superfamily n=1 Tax=Scenedesmu... [more]
A0A383WL23_TETOB2.700e-3245.32Chitin-binding type-4 domain-containing protein n=... [more]
A0A383W0D0_TETOB2.150e-2147.47Endoglucanase n=1 Tax=Tetradesmus obliquus TaxID=3... [more]
A0A7J7Q3S1_9CHLO2.670e-2045.45Endoglucanase n=1 Tax=Scenedesmus sp. NREL 46B-D3 ... [more]
A0A2J7ZS05_9CHLO2.810e-1937.01Chitin-binding type-4 domain-containing protein (F... [more]
UPI001458EE6E1.140e-1640.00mucin-5AC-like n=1 Tax=Pecten maximus TaxID=6579 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_368contigContig_368:1697..2448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129658|gw1.368.1.1
DescriptionLytic polysaccharide mono-oxygenase, cellulose-degrading
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGs28N9R@1|root,2QUV5@2759|Eukaryota,39X12@33154|Opisthokonta,3BFSX@33208|Metazoa,3D5M5@33213|Bilateria
Evalue1.16e-12
Seed ortholog6500.XP_005092247.1
Hectar predicted targeting categoryother localisation
TranscriptId129980
TrackFilteredModels1
ProteinId129658
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129658gene_18999Tribonema minus UTEX_B_3156 geneContig_368 1697..2448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129658Trimin1|129658|gw1.368.1.1Tribonema minus UTEX_B_3156 polypeptideContig_368 1697..2448 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18999_2exon_18999_2Tribonema minus UTEX_B_3156 exonContig_368 1697..1995 -
exon_18999_1exon_18999_1Tribonema minus UTEX_B_3156 exonContig_368 2307..2448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18999CDS_18999Tribonema minus UTEX_B_3156 CDSContig_368 2307..2448 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18999 ID=mRNA_18999|Name=jgi.p|Trimin1|129658|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_368:1697..2448- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TACTGTCAGCAGTGTGGCAATGGGCTCGGCAACAGAAGCGGTGGTACGTA
TCCCCCCGGCATTTGCGGCGATCCCTTCCAGGGAACTTCCTCGAACTTTG
CGGGCGGCCCTGGCCCTATAAGAGGTGCGTACAACAAGTCTGCCACATAC
TCACAGGGCCAGACTGTCGATGTCCAGGCTATCCTTACAGCCAACCATGG
CGGCCGCTTCAGAGTGAAGATGTGCCCGGACGTCTCGTCATCCGCCACGC
AGTCCTGCTTTGACAGCAACACCCTAAAGCGGAAGGATACTGGCGCCACT
GACTATTGGCTCCTGACTGGAAGCTACGGTGACTCCCCACCGTACAGCAT
GCAGTACATTTTGCCAGCTGGTGTTGCATGCTCCAACGGCTGCCTGCTGC
AATGGGAGTACACTGCAATGCAGAGCTGCGTTGTGCAGTGC
back to top

protein sequence of jgi.p|Trimin1|129658

>Trimin1|129658|gw1.368.1.1 ID=Trimin1|129658|gw1.368.1.1|Name=jgi.p|Trimin1|129658|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
YCQQCGNGLGNRSGGTYPPGICGDPFQGTSSNFAGGPGPIRGAYNKSATY
SQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGAT
DYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC
back to top

mRNA from alignment at Contig_368:1697..2448-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18999 ID=mRNA_18999|Name=jgi.p|Trimin1|129658|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=752bp|location=Sequence derived from alignment at Contig_368:1697..2448- (Tribonema minus UTEX_B_3156 )
TACTGTCAGCAGTGTGGCAATGGGCTCGGCAACAGAAGCGGTGGTACGTA TCCCCCCGGCATTTGCGGCGATCCCTTCCAGGGAACTTCCTCGAACTTTG CGGGCGGCCCTGGCCCTATAAGAGGTGCGTACAACAAGTCTGGTAACCTC TTTGAAATGACCACTGGTAGAATTTAATACCTACAGGACAGTGTCTGCAC AAATGAATGCATCAAAAGACTTGACATGGCCCCTCTGTACCACCGCAAAC CCTGATGAGACAACTCTCAAGAACACTGCAGGCACTCGCCAGCAAGCGCA CCTTGATTTGCCCTTTCGGACAACAGTATACTGCAGCTTATTGCACAAAG CATCCACTCTAGGCTTCATGACATTTCATTCAAAGCACAACTCACTGTAC TGAAGTACACAACTCTCACACGCGCATCTTCGTACTTCATCCTCTTTTGG CAGCCACATACTCACAGGGCCAGACTGTCGATGTCCAGGCTATCCTTACA GCCAACCATGGCGGCCGCTTCAGAGTGAAGATGTGCCCGGACGTCTCGTC ATCCGCCACGCAGTCCTGCTTTGACAGCAACACCCTAAAGCGGAAGGATA CTGGCGCCACTGACTATTGGCTCCTGACTGGAAGCTACGGTGACTCCCCA CCGTACAGCATGCAGTACATTTTGCCAGCTGGTGTTGCATGCTCCAACGG CTGCCTGCTGCAATGGGAGTACACTGCAATGCAGAGCTGCGTTGTGCAGT GC
back to top

Coding sequence (CDS) from alignment at Contig_368:1697..2448-

>mRNA_18999 ID=mRNA_18999|Name=jgi.p|Trimin1|129658|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_368:1697..2448- (Tribonema minus UTEX_B_3156 )
TACTGTCAGCAGTGTGGCAATGGGCTCGGCAACAGAAGCGGTGGTACGTA
TCCCCCCGGCATTTGCGGCGATCCCTTCCAGGGAACTTCCTCGAACTTTG
CGGGCGGCCCTGGCCCTATAAGAGGTGCGTACAACAAGTCTGCCACATAC
TCACAGGGCCAGACTGTCGATGTCCAGGCTATCCTTACAGCCAACCATGG
CGGCCGCTTCAGAGTGAAGATGTGCCCGGACGTCTCGTCATCCGCCACGC
AGTCCTGCTTTGACAGCAACACCCTAAAGCGGAAGGATACTGGCGCCACT
GACTATTGGCTCCTGACTGGAAGCTACGGTGACTCCCCACCGTACAGCAT
GCAGTACATTTTGCCAGCTGGTGTTGCATGCTCCAACGGCTGCCTGCTGC
AATGGGAGTACACTGCAATGCAGAGCTGCGTTGTGCAGTGC
back to top