mRNA_1896 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A836CJD1_9STRA (Cyclin-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD1_9STRA) HSP 1 Score: 297 bits (761), Expect = 7.780e-102 Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVYL 465 ISPSMRSTLFGWVTSAHYELIL PATLHLTFSIIDRYCALEFV+AQELRLLGAASLMMAAKYEET+THPVRTYLRVCGMVYQRHELLGME+RVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDH TLAHLPSEIASAAVYL Sbjct: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYL 155
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A836CN34_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN34_9STRA) HSP 1 Score: 212 bits (539), Expect = 5.440e-67 Identity = 103/155 (66.45%), Postives = 127/155 (81.94%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVYL 465 ISPS R LF W+ +A L+L P+TLH+ FSI DR+CA++ V+ ELRL GAA+LM+A KYEETV H VRTY+ +C M Y + EL+ ME+R+LERL+YRLTVPTTYTF+AYA+R+ +GT AQLKRARRYAE ALRDH TLAHLPSEIA+AA+YL Sbjct: 10 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYL 164
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: CCB15_ORYSJ (Cyclin-B1-5 n=10 Tax=Oryza TaxID=4527 RepID=CCB15_ORYSJ) HSP 1 Score: 121 bits (304), Expect = 9.980e-30 Identity = 60/154 (38.96%), Postives = 95/154 (61.69%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462 ++P MR+ L W+ HY+ L P TL+LT +IDRY +L+ V +EL+L+G A++++A+KYEE V+ + VC Y R +L MEK +L RLQ+ +TVPT Y F+ I+ A G ++E+AL+++ + PS +A++AVY Sbjct: 225 VNPKMRAILADWIIDVHYKFELMPETLYLTMYVIDRYLSLQPVLRRELQLVGVAAMLIASKYEEMWAPEVQDLIHVCDNAYSRQHILAMEKNILNRLQWNITVPTPYVFLLRFIKAAGGDKELENMVFFFSEMALKEYGMASLCPSLVAASAVY 378
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A0P0WP44_ORYSJ (Os05g0493500 protein (Fragment) n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0WP44_ORYSJ) HSP 1 Score: 121 bits (304), Expect = 1.490e-29 Identity = 60/154 (38.96%), Postives = 95/154 (61.69%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462 ++P MR+ L W+ HY+ L P TL+LT +IDRY +L+ V +EL+L+G A++++A+KYEE V+ + VC Y R +L MEK +L RLQ+ +TVPT Y F+ I+ A G ++E+AL+++ + PS +A++AVY Sbjct: 263 VNPKMRAILADWIIDVHYKFELMPETLYLTMYVIDRYLSLQPVLRRELQLVGVAAMLIASKYEEMWAPEVQDLIHVCDNAYSRQHILAMEKNILNRLQWNITVPTPYVFLLRFIKAAGGDKELENMVFFFSEMALKEYGMASLCPSLVAASAVY 416
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A0D9WI43_9ORYZ (Cyclin N-terminal domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WI43_9ORYZ) HSP 1 Score: 122 bits (306), Expect = 2.280e-29 Identity = 60/154 (38.96%), Postives = 96/154 (62.34%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462 ++P MR+ L W+T HY+ L P TL+LT IIDR+ +L+ V +EL+L+G A++++A KYEE V ++ + Y RH++L MEK +L R+Q+ LTVPT Y F+ I+ A G ++E+AL+++ + PS +A++AVY Sbjct: 229 VNPKMRAILADWITEVHYKFELMPETLYLTVYIIDRFLSLQPVLRRELQLVGVAAMLIACKYEEIWAPDVNDFICIADNAYSRHQILAMEKNILNRMQWNLTVPTPYVFLVRFIKAAGGDKELENMVFFFSEMALKEYGMASLCPSLVAASAVY 382
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A6G1EFE3_9ORYZ (Cyclin N-terminal domain-containing protein n=3 Tax=Oryza TaxID=4527 RepID=A0A6G1EFE3_9ORYZ) HSP 1 Score: 119 bits (298), Expect = 7.600e-29 Identity = 59/154 (38.31%), Postives = 94/154 (61.04%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462 ++P MR+ L W+ HY+ L P TL+LT +IDRY +L+ V +EL+L+G A++++A KYEE V ++ + Y RH++L MEK +L RLQ+ LTVPT Y F+ ++ A G A ++E+AL ++ PS ++++AVY Sbjct: 230 VNPKMRAILADWIIEVHYKFELMPETLYLTIYVIDRYLSLQPVLRRELQLVGVAAMLIACKYEEIWAPEVIDFIGIADNAYSRHQILAMEKNILNRLQWNLTVPTPYVFLVRFVKAAGGDKELEHMAFFFSEMALTEYGMALLCPSLVSASAVY 383
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: UPI001C4CBA7D (G2/mitotic-specific cyclin S13-7-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4CBA7D) HSP 1 Score: 117 bits (293), Expect = 3.960e-28 Identity = 58/154 (37.66%), Postives = 95/154 (61.69%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462 I+ MR+ L W+ HY+ L P TL+LT IIDRY + E+ +EL+L+G +++++A+KYEE V ++ + Y R E+L MEKR+L++LQ+ LTVPT Y F+ ++ A + +AE+AL ++ + + PS +A+A+VY Sbjct: 219 INAKMRTVLVDWLIEVHYKFELMPETLYLTLYIIDRYLSTEWTLRRELQLVGVSAMLIASKYEEIWAPEVHDFICISDRAYTREEILRMEKRILDKLQWNLTVPTPYVFLVRFVKAAECDTEMKHLVFFFAELALMQYSLVTNCPSMVAAASVY 372
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A6P5HN06_ANACO (LOW QUALITY PROTEIN: cyclin-B1-1-like n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5HN06_ANACO) HSP 1 Score: 112 bits (281), Expect = 4.300e-28 Identity = 55/150 (36.67%), Postives = 89/150 (59.33%), Query Frame = 1 Query: 13 MRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462 MR+ L W+ H++ L P TL+LTF +IDRY ++E V +EL+L+G +L++A KYEE V ++ + Y R ++LGMEK +L +L++ LTVPT Y F+ ++ A +AE+ L + + + PS +A++AVY Sbjct: 1 MRAILADWIIEVHHKFDLRPETLYLTFYVIDRYLSMEMVPRRELQLVGVVALLIACKYEEIWAPEVNDFICISDRAYTRXQILGMEKTILNKLEWNLTVPTPYVFLLRFLKAAASDKEMEHMVFFFAELGLVQYPVVMYCPSMVAASAVY 150
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A8D7AUA1_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A8D7AUA1_MUSAM) HSP 1 Score: 116 bits (291), Expect = 8.320e-28 Identity = 60/157 (38.22%), Postives = 97/157 (61.78%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARR---YAEIALRDHTTLAHLPSEIASAAVY 462 I+ MR+ L W+ H++ L P TL+LTF IIDRY ++E V EL+L+G +++++A+KYEE V ++ + Y R ++LGMEK +L+RL++ LTVPT Y F+ ++ A + R +AE+AL +++ H PS +A+A+VY Sbjct: 274 INAKMRAILADWLIEVHHKFELTPETLYLTFHIIDRYLSMETVLRIELQLVGVSAMLIASKYEEIWAPEVNDFICISDRAYTREQILGMEKAILDRLEWNLTVPTPYVFLVRFLKAAASCHRDEEMERMVFFFAELALVEYSMALHSPSMVAAASVY 430
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: M1AAQ1_SOLTU (B-type cyclin n=7 Tax=Solanum TaxID=4107 RepID=M1AAQ1_SOLTU) HSP 1 Score: 115 bits (288), Expect = 1.470e-27 Identity = 57/154 (37.01%), Postives = 95/154 (61.69%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462 IS MR+ L W+ H++ L P TL+LT +I+DRY A+EF + +EL+L+G +++++A+KYEE V ++ + Y ++L MEK++L +L++ LTVPT Y F+ I+ + S AE+ L ++ T+ + PS IA++AVY Sbjct: 194 ISEKMRAILIDWLIEVHHKFELNPETLYLTINIVDRYLAVEFSSRRELQLVGISAMLIASKYEEIWAPEVNDFVGIADKTYSHDQVLAMEKQILGKLEWYLTVPTPYVFLVRFIKASLPDSEMENMVYFLAELGLMNYATVIYCPSMIAASAVY 347 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1896 ID=mRNA_1896|Name=jgi.p|Trimin1|130691|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_26:441734..442198+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATATCACCGAGCATGCGCTCAACGCTGTTTGGCTGGGTCACATCAGCACAback to top protein sequence of jgi.p|Trimin1|130691 >Trimin1|130691|gw1.26.20.1 ID=Trimin1|130691|gw1.26.20.1|Name=jgi.p|Trimin1|130691|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLback to top mRNA from alignment at Contig_26:441734..442198+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1896 ID=mRNA_1896|Name=jgi.p|Trimin1|130691|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_26:441734..442198+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:441734..442198+ >mRNA_1896 ID=mRNA_1896|Name=jgi.p|Trimin1|130691|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_26:441734..442198+ (Tribonema minus UTEX_B_3156 )back to top |