mRNA_1896 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130691
Unique NamemRNA_1896
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A836CJD1_9STRA (Cyclin-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD1_9STRA)

HSP 1 Score: 297 bits (761), Expect = 7.780e-102
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVYL 465
            ISPSMRSTLFGWVTSAHYELIL PATLHLTFSIIDRYCALEFV+AQELRLLGAASLMMAAKYEET+THPVRTYLRVCGMVYQRHELLGME+RVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDH TLAHLPSEIASAAVYL
Sbjct:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYL 155          
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A836CN34_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN34_9STRA)

HSP 1 Score: 212 bits (539), Expect = 5.440e-67
Identity = 103/155 (66.45%), Postives = 127/155 (81.94%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVYL 465
            ISPS R  LF W+ +A   L+L P+TLH+ FSI DR+CA++ V+  ELRL GAA+LM+A KYEETV H VRTY+ +C M Y + EL+ ME+R+LERL+YRLTVPTTYTF+AYA+R+ +GT AQLKRARRYAE ALRDH TLAHLPSEIA+AA+YL
Sbjct:   10 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYL 164          
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: CCB15_ORYSJ (Cyclin-B1-5 n=10 Tax=Oryza TaxID=4527 RepID=CCB15_ORYSJ)

HSP 1 Score: 121 bits (304), Expect = 9.980e-30
Identity = 60/154 (38.96%), Postives = 95/154 (61.69%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462
            ++P MR+ L  W+   HY+  L P TL+LT  +IDRY +L+ V  +EL+L+G A++++A+KYEE     V+  + VC   Y R  +L MEK +L RLQ+ +TVPT Y F+   I+ A G          ++E+AL+++   +  PS +A++AVY
Sbjct:  225 VNPKMRAILADWIIDVHYKFELMPETLYLTMYVIDRYLSLQPVLRRELQLVGVAAMLIASKYEEMWAPEVQDLIHVCDNAYSRQHILAMEKNILNRLQWNITVPTPYVFLLRFIKAAGGDKELENMVFFFSEMALKEYGMASLCPSLVAASAVY 378          
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A0P0WP44_ORYSJ (Os05g0493500 protein (Fragment) n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0WP44_ORYSJ)

HSP 1 Score: 121 bits (304), Expect = 1.490e-29
Identity = 60/154 (38.96%), Postives = 95/154 (61.69%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462
            ++P MR+ L  W+   HY+  L P TL+LT  +IDRY +L+ V  +EL+L+G A++++A+KYEE     V+  + VC   Y R  +L MEK +L RLQ+ +TVPT Y F+   I+ A G          ++E+AL+++   +  PS +A++AVY
Sbjct:  263 VNPKMRAILADWIIDVHYKFELMPETLYLTMYVIDRYLSLQPVLRRELQLVGVAAMLIASKYEEMWAPEVQDLIHVCDNAYSRQHILAMEKNILNRLQWNITVPTPYVFLLRFIKAAGGDKELENMVFFFSEMALKEYGMASLCPSLVAASAVY 416          
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A0D9WI43_9ORYZ (Cyclin N-terminal domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WI43_9ORYZ)

HSP 1 Score: 122 bits (306), Expect = 2.280e-29
Identity = 60/154 (38.96%), Postives = 96/154 (62.34%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462
            ++P MR+ L  W+T  HY+  L P TL+LT  IIDR+ +L+ V  +EL+L+G A++++A KYEE     V  ++ +    Y RH++L MEK +L R+Q+ LTVPT Y F+   I+ A G          ++E+AL+++   +  PS +A++AVY
Sbjct:  229 VNPKMRAILADWITEVHYKFELMPETLYLTVYIIDRFLSLQPVLRRELQLVGVAAMLIACKYEEIWAPDVNDFICIADNAYSRHQILAMEKNILNRMQWNLTVPTPYVFLVRFIKAAGGDKELENMVFFFSEMALKEYGMASLCPSLVAASAVY 382          
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A6G1EFE3_9ORYZ (Cyclin N-terminal domain-containing protein n=3 Tax=Oryza TaxID=4527 RepID=A0A6G1EFE3_9ORYZ)

HSP 1 Score: 119 bits (298), Expect = 7.600e-29
Identity = 59/154 (38.31%), Postives = 94/154 (61.04%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462
            ++P MR+ L  W+   HY+  L P TL+LT  +IDRY +L+ V  +EL+L+G A++++A KYEE     V  ++ +    Y RH++L MEK +L RLQ+ LTVPT Y F+   ++ A G       A  ++E+AL ++      PS ++++AVY
Sbjct:  230 VNPKMRAILADWIIEVHYKFELMPETLYLTIYVIDRYLSLQPVLRRELQLVGVAAMLIACKYEEIWAPEVIDFIGIADNAYSRHQILAMEKNILNRLQWNLTVPTPYVFLVRFVKAAGGDKELEHMAFFFSEMALTEYGMALLCPSLVSASAVY 383          
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: UPI001C4CBA7D (G2/mitotic-specific cyclin S13-7-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4CBA7D)

HSP 1 Score: 117 bits (293), Expect = 3.960e-28
Identity = 58/154 (37.66%), Postives = 95/154 (61.69%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462
            I+  MR+ L  W+   HY+  L P TL+LT  IIDRY + E+   +EL+L+G +++++A+KYEE     V  ++ +    Y R E+L MEKR+L++LQ+ LTVPT Y F+   ++ A   +        +AE+AL  ++ + + PS +A+A+VY
Sbjct:  219 INAKMRTVLVDWLIEVHYKFELMPETLYLTLYIIDRYLSTEWTLRRELQLVGVSAMLIASKYEEIWAPEVHDFICISDRAYTREEILRMEKRILDKLQWNLTVPTPYVFLVRFVKAAECDTEMKHLVFFFAELALMQYSLVTNCPSMVAAASVY 372          
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A6P5HN06_ANACO (LOW QUALITY PROTEIN: cyclin-B1-1-like n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5HN06_ANACO)

HSP 1 Score: 112 bits (281), Expect = 4.300e-28
Identity = 55/150 (36.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query:   13 MRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462
            MR+ L  W+   H++  L P TL+LTF +IDRY ++E V  +EL+L+G  +L++A KYEE     V  ++ +    Y R ++LGMEK +L +L++ LTVPT Y F+   ++ A            +AE+ L  +  + + PS +A++AVY
Sbjct:    1 MRAILADWIIEVHHKFDLRPETLYLTFYVIDRYLSMEMVPRRELQLVGVVALLIACKYEEIWAPEVNDFICISDRAYTRXQILGMEKTILNKLEWNLTVPTPYVFLLRFLKAAASDKEMEHMVFFFAELGLVQYPVVMYCPSMVAASAVY 150          
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: A0A8D7AUA1_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A8D7AUA1_MUSAM)

HSP 1 Score: 116 bits (291), Expect = 8.320e-28
Identity = 60/157 (38.22%), Postives = 97/157 (61.78%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARR---YAEIALRDHTTLAHLPSEIASAAVY 462
            I+  MR+ L  W+   H++  L P TL+LTF IIDRY ++E V   EL+L+G +++++A+KYEE     V  ++ +    Y R ++LGMEK +L+RL++ LTVPT Y F+   ++ A       +  R    +AE+AL +++   H PS +A+A+VY
Sbjct:  274 INAKMRAILADWLIEVHHKFELTPETLYLTFHIIDRYLSMETVLRIELQLVGVSAMLIASKYEEIWAPEVNDFICISDRAYTREQILGMEKAILDRLEWNLTVPTPYVFLVRFLKAAASCHRDEEMERMVFFFAELALVEYSMALHSPSMVAAASVY 430          
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Match: M1AAQ1_SOLTU (B-type cyclin n=7 Tax=Solanum TaxID=4107 RepID=M1AAQ1_SOLTU)

HSP 1 Score: 115 bits (288), Expect = 1.470e-27
Identity = 57/154 (37.01%), Postives = 95/154 (61.69%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRLLGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIASAAVY 462
            IS  MR+ L  W+   H++  L P TL+LT +I+DRY A+EF + +EL+L+G +++++A+KYEE     V  ++ +    Y   ++L MEK++L +L++ LTVPT Y F+   I+ +   S         AE+ L ++ T+ + PS IA++AVY
Sbjct:  194 ISEKMRAILIDWLIEVHHKFELNPETLYLTINIVDRYLAVEFSSRRELQLVGISAMLIASKYEEIWAPEVNDFVGIADKTYSHDQVLAMEKQILGKLEWYLTVPTPYVFLVRFIKASLPDSEMENMVYFLAELGLMNYATVIYCPSMIAASAVY 347          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130691 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJD1_9STRA7.780e-10296.77Cyclin-like protein (Fragment) n=2 Tax=Tribonema m... [more]
A0A836CN34_9STRA5.440e-6766.45Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
CCB15_ORYSJ9.980e-3038.96Cyclin-B1-5 n=10 Tax=Oryza TaxID=4527 RepID=CCB15_... [more]
A0A0P0WP44_ORYSJ1.490e-2938.96Os05g0493500 protein (Fragment) n=1 Tax=Oryza sati... [more]
A0A0D9WI43_9ORYZ2.280e-2938.96Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A6G1EFE3_9ORYZ7.600e-2938.31Cyclin N-terminal domain-containing protein n=3 Ta... [more]
UPI001C4CBA7D3.960e-2837.66G2/mitotic-specific cyclin S13-7-like n=1 Tax=Zing... [more]
A0A6P5HN06_ANACO4.300e-2836.67LOW QUALITY PROTEIN: cyclin-B1-1-like n=1 Tax=Anan... [more]
A0A8D7AUA1_MUSAM8.320e-2838.22(wild Malaysian banana) hypothetical protein n=1 T... [more]
M1AAQ1_SOLTU1.470e-2737.01B-type cyclin n=7 Tax=Solanum TaxID=4107 RepID=M1A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:441734..442198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130691|gw1.26.20.1
BRITEko00000,ko03032,ko03036
KEGG koko:K21777
GOsGO:0001558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0010332,GO:0040008,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0065007
DescriptionBelongs to the cyclin family
COG categoryD
Max annot lvl35493|Streptophyta
EggNOG OGsCOG5024@1|root,KOG0653@2759|Eukaryota,37K6W@33090|Viridiplantae,3G7ME@35493|Streptophyta,3KPGE@4447|Liliopsida,3I5NC@38820|Poales
Evalue1.17e-31
Seed ortholog4537.OPUNC05G18980.1
Hectar predicted targeting categoryother localisation
TranscriptId131013
TrackFilteredModels1
ProteinId130691
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130691gene_1896Tribonema minus UTEX_B_3156 geneContig_26 441734..442198 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1896_1exon_1896_1Tribonema minus UTEX_B_3156 exonContig_26 441734..442198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1896CDS_1896Tribonema minus UTEX_B_3156 CDSContig_26 441734..442198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130691Trimin1|130691|gw1.26.20.1Tribonema minus UTEX_B_3156 polypeptideContig_26 441734..442198 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1896 ID=mRNA_1896|Name=jgi.p|Trimin1|130691|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_26:441734..442198+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATATCACCGAGCATGCGCTCAACGCTGTTTGGCTGGGTCACATCAGCACA
TTATGAGCTGATACTTGGTCCTGCTACGCTCCACCTGACTTTCAGCATCA
TCGACCGCTATTGCGCCCTGGAGTTTGTCAATGCACAAGAGCTTAGACTG
TTGGGCGCAGCATCGCTGATGATGGCGGCCAAGTACGAGGAAACAGTGAC
CCATCCAGTCCGAACATACCTGAGAGTGTGCGGCATGGTGTATCAGAGGC
ATGAGCTGCTTGGGATGGAGAAACGCGTCCTTGAGCGGCTCCAGTACCGC
CTCACAGTGCCGACTACATACACATTCATCGCATATGCCATCAGGGAGGC
CAACGGCACATCTGCTCAGCTGAAGAGAGCCAGGCGCTATGCTGAGATTG
CGCTGCGAGACCACACCACACTGGCTCATTTGCCATCTGAGATTGCATCA
GCTGCAGTGTACCTC
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protein sequence of jgi.p|Trimin1|130691

>Trimin1|130691|gw1.26.20.1 ID=Trimin1|130691|gw1.26.20.1|Name=jgi.p|Trimin1|130691|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
ISPSMRSTLFGWVTSAHYELILGPATLHLTFSIIDRYCALEFVNAQELRL
LGAASLMMAAKYEETVTHPVRTYLRVCGMVYQRHELLGMEKRVLERLQYR
LTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHTTLAHLPSEIAS
AAVYL
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mRNA from alignment at Contig_26:441734..442198+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1896 ID=mRNA_1896|Name=jgi.p|Trimin1|130691|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_26:441734..442198+ (Tribonema minus UTEX_B_3156 )
ATATCACCGAGCATGCGCTCAACGCTGTTTGGCTGGGTCACATCAGCACA TTATGAGCTGATACTTGGTCCTGCTACGCTCCACCTGACTTTCAGCATCA TCGACCGCTATTGCGCCCTGGAGTTTGTCAATGCACAAGAGCTTAGACTG TTGGGCGCAGCATCGCTGATGATGGCGGCCAAGTACGAGGAAACAGTGAC CCATCCAGTCCGAACATACCTGAGAGTGTGCGGCATGGTGTATCAGAGGC ATGAGCTGCTTGGGATGGAGAAACGCGTCCTTGAGCGGCTCCAGTACCGC CTCACAGTGCCGACTACATACACATTCATCGCATATGCCATCAGGGAGGC CAACGGCACATCTGCTCAGCTGAAGAGAGCCAGGCGCTATGCTGAGATTG CGCTGCGAGACCACACCACACTGGCTCATTTGCCATCTGAGATTGCATCA GCTGCAGTGTACCTC
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Coding sequence (CDS) from alignment at Contig_26:441734..442198+

>mRNA_1896 ID=mRNA_1896|Name=jgi.p|Trimin1|130691|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_26:441734..442198+ (Tribonema minus UTEX_B_3156 )
ATATCACCGAGCATGCGCTCAACGCTGTTTGGCTGGGTCACATCAGCACA
TTATGAGCTGATACTTGGTCCTGCTACGCTCCACCTGACTTTCAGCATCA
TCGACCGCTATTGCGCCCTGGAGTTTGTCAATGCACAAGAGCTTAGACTG
TTGGGCGCAGCATCGCTGATGATGGCGGCCAAGTACGAGGAAACAGTGAC
CCATCCAGTCCGAACATACCTGAGAGTGTGCGGCATGGTGTATCAGAGGC
ATGAGCTGCTTGGGATGGAGAAACGCGTCCTTGAGCGGCTCCAGTACCGC
CTCACAGTGCCGACTACATACACATTCATCGCATATGCCATCAGGGAGGC
CAACGGCACATCTGCTCAGCTGAAGAGAGCCAGGCGCTATGCTGAGATTG
CGCTGCGAGACCACACCACACTGGCTCATTTGCCATCTGAGATTGCATCA
GCTGCAGTGTACCTC
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