mRNA_1865 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A836CJC1_9STRA (AAA domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC1_9STRA) HSP 1 Score: 355 bits (911), Expect = 1.420e-123 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 Query: 1 MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549 MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI Sbjct: 1 MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 183
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A835Z2P4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P4_9STRA) HSP 1 Score: 271 bits (693), Expect = 5.030e-91 Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = 1 Query: 85 LDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 546 +D PLSFVQGYQH+MLVGPPGSGKSQ+SN+LAQLYGALCIVADV+ +GVARV EKFPSDFIA YVGQTAPQTRD+LVQSLEKVL IDEAYGLTETGS +KDDSYGHEAVNEIV+FLSTH+GQMIVIAAGYKEEMVKFRTSNVGLARRIPRV Sbjct: 1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 154
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A836CPV8_9STRA (ATPase_AAA_core domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPV8_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.020e-56 Identity = 89/151 (58.94%), Postives = 123/151 (81.46%), Query Frame = 1 Query: 85 LDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRI 537 +D P +F++G+Q+L+LVG PGSGK++Y+N LAQ++ AL IV +VD +G A V+EK P+DFI Y+GQTAP+TR +L++S EKVL IDEAYG+TE + K + YG EAVNE+V +LSTH+GQ+IVIAAGY+EEM++F+ +NVGLARR+ Sbjct: 1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITEN----EKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRM 147
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A651H0I3_9ACTN (AAA family ATPase n=2 Tax=Nitriliruptor sp. TaxID=2448056 RepID=A0A651H0I3_9ACTN) HSP 1 Score: 105 bits (261), Expect = 5.240e-23 Identity = 60/154 (38.96%), Postives = 87/154 (56.49%), Query Frame = 1 Query: 88 DTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549 D L+ V +HL+ G PG+GK+ + ++ ++Y +L VA V E + +A YVGQTA + +++ +L+ VLLIDEAY LT GS G +G EAV+ +V + H +++VI AGY EEM F SN GL+ R PR I Sbjct: 308 DRGLTSVPTSRHLVFTGNPGTGKTTVARLVGRIYASLGAVAS-------GHVVETDRAGLVAGYVGQTAAKVTEVVTSALDGVLLIDEAYALTR-GSGGAAGGGDFGQEAVDTLVKLMEDHRDRLVVIVAGYPEEMTDFIASNPGLSSRFPRTI 453
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A1Q3H3E3_9BACT (Uncharacterized protein n=2 Tax=Cytophagales TaxID=768507 RepID=A0A1Q3H3E3_9BACT) HSP 1 Score: 103 bits (256), Expect = 3.290e-22 Identity = 57/138 (41.30%), Postives = 85/138 (61.59%), Query Frame = 1 Query: 121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARR 534 HL+ G PG+GK+ + ++ + + AL +V K V V+ +D +A YVGQTA +TR+++ Q+L+ +L IDEAY LT + G D YG EAVN +++ + H +++VIAAGY EEM +F SN GL R Sbjct: 640 HLVFTGNPGTGKTTVARIVGKAFKALGVVK----KGHVVEVQR---ADLVAGYVGQTAIKTREVIEQALDGILFIDEAYTLTRSSGGGDTTD--YGQEAVNTLLAMMENHRDRLVVIAAGYPEEMQQFIESNPGLQSR 768
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A2Z3YQJ8_9CORY (ESX-3 secretion system protein EccA3 n=1 Tax=Corynebacterium provencense TaxID=1737425 RepID=A0A2Z3YQJ8_9CORY) HSP 1 Score: 101 bits (252), Expect = 1.010e-21 Identity = 54/138 (39.13%), Postives = 85/138 (61.59%), Query Frame = 1 Query: 121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARR 534 HL+ GPPG+GK+ + V+A+ + L I+ A V E SD + ++G+TA +T D+++ S++ VL IDEAY L +TG SG D++G EAV+ +++ + H +++VI AGY +E+ F SN GLA R Sbjct: 390 HLVFTGPPGTGKTTIARVVAKYFCGLGILR-------TANVTEVSRSDLVGQHLGETALKTEDVVMSSMDGVLFIDEAYSLIQTGISG---GDAFGREAVDTLLALMENHRDRLVVIIAGYDDEIDDFLASNAGLASR 517
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A4R1FV09_9NOCA (SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=2 Tax=Nocardia alba TaxID=225051 RepID=A0A4R1FV09_9NOCA) HSP 1 Score: 101 bits (252), Expect = 1.090e-21 Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 1 Query: 121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549 H++ G PG+GK+ + ++ +++ AL ++ V +D IA YVGQTA TR + Q+L+ VL IDEAYGL TG + S+ EAVNE+V+ + TH G+++VIAAGY +EM ++ N GL R R + Sbjct: 635 HMLFTGAPGTGKTTVARLMGRVFVALGLLVK-------GHVVSTTSADLIAGYVGQTAQATRAKVEQALDGVLFIDEAYGLEATGQN------SFAREAVNELVAMMDTHRGRLVVIAAGYPDEMAEWVRQNAGLTSRFSRTL 764
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A2S8BF86_9MYCO (ESX-3 secretion system protein EccA3 n=1 Tax=Mycobacterium talmoniae TaxID=1858794 RepID=A0A2S8BF86_9MYCO) HSP 1 Score: 101 bits (251), Expect = 1.340e-21 Identity = 57/143 (39.86%), Postives = 90/143 (62.94%), Query Frame = 1 Query: 121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549 HL+ GPPG+GK+ + V+AQLY L ++ A+V E +DF+A ++GQTA +T ++ +L+ VL IDEAY L +TG SG D++G EAV+ +++ + +++VI AGY +E+ +F +N GLA R P+ I Sbjct: 348 HLVFTGPPGTGKTTIARVIAQLYCGLGVLPQ-------AKVLEVKRADFVAGFLGQTAAKTDALIDAALDGVLFIDEAYTLIQTGLSG---GDAFGREAVDTLLARMENDRHRLMVIIAGYDDEINRFLAANEGLASRFPKRI 480
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A4R4U8B9_9ACTN (AAA family ATPase n=1 Tax=Actinomadura sp. 7K507 TaxID=2530365 RepID=A0A4R4U8B9_9ACTN) HSP 1 Score: 101 bits (251), Expect = 1.510e-21 Identity = 53/154 (34.42%), Postives = 89/154 (57.79%), Query Frame = 1 Query: 88 DTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549 ++ L+ +H++ G PG+GK+ + +L ++Y L +++ + E + + Y+GQTAP+TR ++ ++L VL IDEAY LT++ G YGHEA+ E+V + H ++VI AGY++EMV+F +N GL R P+ I Sbjct: 690 ESGLTITPPTRHMVFTGNPGTGKTMVARLLGRIYKRLGVLSS-------GHLVEASRAHLVGEYIGQTAPRTRRLVERALGGVLFIDEAYTLTQSPMKG-----DYGHEAIAELVKLMEDHRDDLVVIVAGYEQEMVEFLAANPGLDSRFPKQI 831
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A2M9IB63_9ACTN (AAA domain-containing protein n=1 Tax=Streptomyces sp. CB01373 TaxID=2020325 RepID=A0A2M9IB63_9ACTN) HSP 1 Score: 99.0 bits (245), Expect = 1.530e-21 Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 1 Query: 121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549 HL+ GPPG+GK+ + + A+L +L ++ AR+ E +D + YVG TA T+++ +L VL DEAY LT G+SG + +G EAV+ ++ + H +++VI AGY EEM +F SN GLA R R + Sbjct: 90 HLVFTGPPGTGKTTVARLYAELLHSLGVLP-------AARLVEVTRADLVGQYVGHTAQLTKEVFTSALGGVLFFDEAYTLTPEGASG----NGFGREAVDTLLKLMEDHREEIVVIVAGYTEEMERFLASNPGLASRFSRTV 221 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1865 ID=mRNA_1865|Name=jgi.p|Trimin1|163466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_26:350157..350705+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGGCCATTGACAACCTCATTAGGTACTCGCTGGGGCGTCTGAACCTback to top protein sequence of jgi.p|Trimin1|163466 >Trimin1|163466|e_gw1.26.117.1 ID=Trimin1|163466|e_gw1.26.117.1|Name=jgi.p|Trimin1|163466|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=183bp MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGSback to top mRNA from alignment at Contig_26:350157..350705+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1865 ID=mRNA_1865|Name=jgi.p|Trimin1|163466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_26:350157..350705+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:350157..350705+ >mRNA_1865 ID=mRNA_1865|Name=jgi.p|Trimin1|163466|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=549bp|location=Sequence derived from alignment at Contig_26:350157..350705+ (Tribonema minus UTEX_B_3156 )back to top |