mRNA_1865 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163466
Unique NamemRNA_1865
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A836CJC1_9STRA (AAA domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC1_9STRA)

HSP 1 Score: 355 bits (911), Expect = 1.420e-123
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1
Query:    1 MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549
            MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI
Sbjct:    1 MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 183          
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A835Z2P4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P4_9STRA)

HSP 1 Score: 271 bits (693), Expect = 5.030e-91
Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = 1
Query:   85 LDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 546
            +D PLSFVQGYQH+MLVGPPGSGKSQ+SN+LAQLYGALCIVADV+  +GVARV EKFPSDFIA YVGQTAPQTRD+LVQSLEKVL IDEAYGLTETGS   +KDDSYGHEAVNEIV+FLSTH+GQMIVIAAGYKEEMVKFRTSNVGLARRIPRV
Sbjct:    1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 154          
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A836CPV8_9STRA (ATPase_AAA_core domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPV8_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.020e-56
Identity = 89/151 (58.94%), Postives = 123/151 (81.46%), Query Frame = 1
Query:   85 LDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRI 537
            +D P +F++G+Q+L+LVG PGSGK++Y+N LAQ++ AL IV +VD  +G A V+EK P+DFI  Y+GQTAP+TR +L++S EKVL IDEAYG+TE     + K + YG EAVNE+V +LSTH+GQ+IVIAAGY+EEM++F+ +NVGLARR+
Sbjct:    1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITEN----EKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRM 147          
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A651H0I3_9ACTN (AAA family ATPase n=2 Tax=Nitriliruptor sp. TaxID=2448056 RepID=A0A651H0I3_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 5.240e-23
Identity = 60/154 (38.96%), Postives = 87/154 (56.49%), Query Frame = 1
Query:   88 DTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549
            D  L+ V   +HL+  G PG+GK+  + ++ ++Y +L  VA          V E   +  +A YVGQTA +  +++  +L+ VLLIDEAY LT  GS G      +G EAV+ +V  +  H  +++VI AGY EEM  F  SN GL+ R PR I
Sbjct:  308 DRGLTSVPTSRHLVFTGNPGTGKTTVARLVGRIYASLGAVAS-------GHVVETDRAGLVAGYVGQTAAKVTEVVTSALDGVLLIDEAYALTR-GSGGAAGGGDFGQEAVDTLVKLMEDHRDRLVVIVAGYPEEMTDFIASNPGLSSRFPRTI 453          
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A1Q3H3E3_9BACT (Uncharacterized protein n=2 Tax=Cytophagales TaxID=768507 RepID=A0A1Q3H3E3_9BACT)

HSP 1 Score: 103 bits (256), Expect = 3.290e-22
Identity = 57/138 (41.30%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARR 534
            HL+  G PG+GK+  + ++ + + AL +V     K  V  V+    +D +A YVGQTA +TR+++ Q+L+ +L IDEAY LT +   G   D  YG EAVN +++ +  H  +++VIAAGY EEM +F  SN GL  R
Sbjct:  640 HLVFTGNPGTGKTTVARIVGKAFKALGVVK----KGHVVEVQR---ADLVAGYVGQTAIKTREVIEQALDGILFIDEAYTLTRSSGGGDTTD--YGQEAVNTLLAMMENHRDRLVVIAAGYPEEMQQFIESNPGLQSR 768          
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A2Z3YQJ8_9CORY (ESX-3 secretion system protein EccA3 n=1 Tax=Corynebacterium provencense TaxID=1737425 RepID=A0A2Z3YQJ8_9CORY)

HSP 1 Score: 101 bits (252), Expect = 1.010e-21
Identity = 54/138 (39.13%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARR 534
            HL+  GPPG+GK+  + V+A+ +  L I+         A V E   SD +  ++G+TA +T D+++ S++ VL IDEAY L +TG SG    D++G EAV+ +++ +  H  +++VI AGY +E+  F  SN GLA R
Sbjct:  390 HLVFTGPPGTGKTTIARVVAKYFCGLGILR-------TANVTEVSRSDLVGQHLGETALKTEDVVMSSMDGVLFIDEAYSLIQTGISG---GDAFGREAVDTLLALMENHRDRLVVIIAGYDDEIDDFLASNAGLASR 517          
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A4R1FV09_9NOCA (SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=2 Tax=Nocardia alba TaxID=225051 RepID=A0A4R1FV09_9NOCA)

HSP 1 Score: 101 bits (252), Expect = 1.090e-21
Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549
            H++  G PG+GK+  + ++ +++ AL ++           V     +D IA YVGQTA  TR  + Q+L+ VL IDEAYGL  TG +      S+  EAVNE+V+ + TH G+++VIAAGY +EM ++   N GL  R  R +
Sbjct:  635 HMLFTGAPGTGKTTVARLMGRVFVALGLLVK-------GHVVSTTSADLIAGYVGQTAQATRAKVEQALDGVLFIDEAYGLEATGQN------SFAREAVNELVAMMDTHRGRLVVIAAGYPDEMAEWVRQNAGLTSRFSRTL 764          
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A2S8BF86_9MYCO (ESX-3 secretion system protein EccA3 n=1 Tax=Mycobacterium talmoniae TaxID=1858794 RepID=A0A2S8BF86_9MYCO)

HSP 1 Score: 101 bits (251), Expect = 1.340e-21
Identity = 57/143 (39.86%), Postives = 90/143 (62.94%), Query Frame = 1
Query:  121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549
            HL+  GPPG+GK+  + V+AQLY  L ++         A+V E   +DF+A ++GQTA +T  ++  +L+ VL IDEAY L +TG SG    D++G EAV+ +++ +     +++VI AGY +E+ +F  +N GLA R P+ I
Sbjct:  348 HLVFTGPPGTGKTTIARVIAQLYCGLGVLPQ-------AKVLEVKRADFVAGFLGQTAAKTDALIDAALDGVLFIDEAYTLIQTGLSG---GDAFGREAVDTLLARMENDRHRLMVIIAGYDDEINRFLAANEGLASRFPKRI 480          
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A4R4U8B9_9ACTN (AAA family ATPase n=1 Tax=Actinomadura sp. 7K507 TaxID=2530365 RepID=A0A4R4U8B9_9ACTN)

HSP 1 Score: 101 bits (251), Expect = 1.510e-21
Identity = 53/154 (34.42%), Postives = 89/154 (57.79%), Query Frame = 1
Query:   88 DTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549
            ++ L+     +H++  G PG+GK+  + +L ++Y  L +++          + E   +  +  Y+GQTAP+TR ++ ++L  VL IDEAY LT++   G      YGHEA+ E+V  +  H   ++VI AGY++EMV+F  +N GL  R P+ I
Sbjct:  690 ESGLTITPPTRHMVFTGNPGTGKTMVARLLGRIYKRLGVLSS-------GHLVEASRAHLVGEYIGQTAPRTRRLVERALGGVLFIDEAYTLTQSPMKG-----DYGHEAIAELVKLMEDHRDDLVVIVAGYEQEMVEFLAANPGLDSRFPKQI 831          
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Match: A0A2M9IB63_9ACTN (AAA domain-containing protein n=1 Tax=Streptomyces sp. CB01373 TaxID=2020325 RepID=A0A2M9IB63_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 1.530e-21
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549
            HL+  GPPG+GK+  + + A+L  +L ++         AR+ E   +D +  YVG TA  T+++   +L  VL  DEAY LT  G+SG    + +G EAV+ ++  +  H  +++VI AGY EEM +F  SN GLA R  R +
Sbjct:   90 HLVFTGPPGTGKTTVARLYAELLHSLGVLP-------AARLVEVTRADLVGQYVGHTAQLTKEVFTSALGGVLFFDEAYTLTPEGASG----NGFGREAVDTLLKLMEDHREEIVVIVAGYTEEMERFLASNPGLASRFSRTV 221          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163466 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJC1_9STRA1.420e-123100.00AAA domain-containing protein (Fragment) n=2 Tax=T... [more]
A0A835Z2P4_9STRA5.030e-9187.66P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CPV8_9STRA1.020e-5658.94ATPase_AAA_core domain-containing protein (Fragmen... [more]
A0A651H0I3_9ACTN5.240e-2338.96AAA family ATPase n=2 Tax=Nitriliruptor sp. TaxID=... [more]
A0A1Q3H3E3_9BACT3.290e-2241.30Uncharacterized protein n=2 Tax=Cytophagales TaxID... [more]
A0A2Z3YQJ8_9CORY1.010e-2139.13ESX-3 secretion system protein EccA3 n=1 Tax=Coryn... [more]
A0A4R1FV09_9NOCA1.090e-2139.16SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=2 Tax=N... [more]
A0A2S8BF86_9MYCO1.340e-2139.86ESX-3 secretion system protein EccA3 n=1 Tax=Mycob... [more]
A0A4R4U8B9_9ACTN1.510e-2134.42AAA family ATPase n=1 Tax=Actinomadura sp. 7K507 T... [more]
A0A2M9IB63_9ACTN1.530e-2137.76AAA domain-containing protein n=1 Tax=Streptomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:350157..350705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163466|e_gw1.26.117.1
DescriptionAAA ATPase central domain protein
COG categoryO
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG0464@1|root,COG0464@2|Bacteria,2GJWA@201174|Actinobacteria
Evalue6.18e-22
Seed ortholog58123.JOFJ01000004_gene1745
Hectar predicted targeting categoryother localisation
TranscriptId163788
TrackFilteredModels1
ProteinId163466
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163466gene_1865Tribonema minus UTEX_B_3156 geneContig_26 350157..350705 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1865_1exon_1865_1Tribonema minus UTEX_B_3156 exonContig_26 350157..350705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1865CDS_1865Tribonema minus UTEX_B_3156 CDSContig_26 350157..350705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163466Trimin1|163466|e_gw1.26.117.1Tribonema minus UTEX_B_3156 polypeptideContig_26 350157..350705 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1865 ID=mRNA_1865|Name=jgi.p|Trimin1|163466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_26:350157..350705+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCCATTGACAACCTCATTAGGTACTCGCTGGGGCGTCTGAACCT
GCTTACGTTTGTACACACGCTGTTGGTGCAGTTCCTGGACACACCGCTAA
GCTTTGTGCAGGGGTATCAGCACCTCATGCTCGTAGGTCCCCCTGGTTCC
GGCAAGTCTCAGTATTCTAACGTTTTGGCACAACTCTATGGCGCTCTGTG
CATCGTTGCAGATGTGGACATAAAGGACGGTGTTGCGCGAGTGAAGGAGA
AATTTCCTTCCGATTTCATTGCAACCTATGTGGGTCAAACAGCCCCACAA
ACACGTGATATACTGGTGCAATCACTGGAAAAAGTGCTCCTCATAGATGA
AGCTTATGGCTTGACTGAAACGGGATCTTCTGGCAAAAACAAGGATGACA
GTTACGGGCATGAAGCTGTGAATGAAATCGTTAGCTTCTTAAGCACTCAC
ATGGGCCAGATGATTGTGATTGCCGCAGGCTACAAGGAGGAGATGGTGAA
GTTCCGTACAAGTAATGTTGGCCTGGCACGACGTATCCCTAGAGTAATT
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protein sequence of jgi.p|Trimin1|163466

>Trimin1|163466|e_gw1.26.117.1 ID=Trimin1|163466|e_gw1.26.117.1|Name=jgi.p|Trimin1|163466|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=183bp
MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGS
GKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQ
TRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTH
MGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI
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mRNA from alignment at Contig_26:350157..350705+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1865 ID=mRNA_1865|Name=jgi.p|Trimin1|163466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_26:350157..350705+ (Tribonema minus UTEX_B_3156 )
ATGCAGGCCATTGACAACCTCATTAGGTACTCGCTGGGGCGTCTGAACCT GCTTACGTTTGTACACACGCTGTTGGTGCAGTTCCTGGACACACCGCTAA GCTTTGTGCAGGGGTATCAGCACCTCATGCTCGTAGGTCCCCCTGGTTCC GGCAAGTCTCAGTATTCTAACGTTTTGGCACAACTCTATGGCGCTCTGTG CATCGTTGCAGATGTGGACATAAAGGACGGTGTTGCGCGAGTGAAGGAGA AATTTCCTTCCGATTTCATTGCAACCTATGTGGGTCAAACAGCCCCACAA ACACGTGATATACTGGTGCAATCACTGGAAAAAGTGCTCCTCATAGATGA AGCTTATGGCTTGACTGAAACGGGATCTTCTGGCAAAAACAAGGATGACA GTTACGGGCATGAAGCTGTGAATGAAATCGTTAGCTTCTTAAGCACTCAC ATGGGCCAGATGATTGTGATTGCCGCAGGCTACAAGGAGGAGATGGTGAA GTTCCGTACAAGTAATGTTGGCCTGGCACGACGTATCCCTAGAGTAATT
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Coding sequence (CDS) from alignment at Contig_26:350157..350705+

>mRNA_1865 ID=mRNA_1865|Name=jgi.p|Trimin1|163466|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=549bp|location=Sequence derived from alignment at Contig_26:350157..350705+ (Tribonema minus UTEX_B_3156 )
ATGCAGGCCATTGACAACCTCATTAGGTACTCGCTGGGGCGTCTGAACCT
GCTTACGTTTGTACACACGCTGTTGGTGCAGTTCCTGGACACACCGCTAA
GCTTTGTGCAGGGGTATCAGCACCTCATGCTCGTAGGTCCCCCTGGTTCC
GGCAAGTCTCAGTATTCTAACGTTTTGGCACAACTCTATGGCGCTCTGTG
CATCGTTGCAGATGTGGACATAAAGGACGGTGTTGCGCGAGTGAAGGAGA
AATTTCCTTCCGATTTCATTGCAACCTATGTGGGTCAAACAGCCCCACAA
ACACGTGATATACTGGTGCAATCACTGGAAAAAGTGCTCCTCATAGATGA
AGCTTATGGCTTGACTGAAACGGGATCTTCTGGCAAAAACAAGGATGACA
GTTACGGGCATGAAGCTGTGAATGAAATCGTTAGCTTCTTAAGCACTCAC
ATGGGCCAGATGATTGTGATTGCCGCAGGCTACAAGGAGGAGATGGTGAA
GTTCCGTACAAGTAATGTTGGCCTGGCACGACGTATCCCTAGAGTAATT
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