mRNA_1859 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163482
Unique NamemRNA_1859
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Match: A0A835YYA9_9STRA (Putative nuclease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA9_9STRA)

HSP 1 Score: 310 bits (793), Expect = 7.940e-107
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1
Query:    1 MRLRKLSNLISRAGSTTWDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKSPWLNK 456
            MRLRKLSNLISRAGSTTWDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKSPWLNK
Sbjct:    1 MRLRKLSNLISRAGSTTWDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKSPWLNK 152          
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Match: A0A836CPX4_9STRA (Putative nuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPX4_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.030e-70
Identity = 106/148 (71.62%), Postives = 124/148 (83.78%), Query Frame = 1
Query:    1 MRLRKLSNLISRA-GSTTWDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKS 441
            M LRKLS L+  +     W +VTYD+C+KYLPAHDGD+AKV+RVIDGDTVHLALK+NG F R+ CRL GID AE+ SKD  EK L E+AKS+LA ACDNKLVTLSNV LEKYGRLLADLTV G++VTLSQVML +P++CHAYDGGKK+
Sbjct:    1 MLLRKLSALVCGSHNGIDWQDVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLALKNNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKT 148          
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Match: A0A835Z7E9_9STRA (FirrV-1-P2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E9_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.230e-35
Identity = 63/134 (47.01%), Postives = 85/134 (63.43%), Query Frame = 1
Query:   46 TTWDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKSPW 447
            T  + +TY++C ++L   +GD  K+V+V DGDTV  A   NG   +  CRL GID  ELHS + HEKAL  KA+  L+A   NK+VT+ +  LEKYGR+L DL V+G +      M+ + DVC+AYDGG K  W
Sbjct:    2 TELNKLTYESCKQFLALEEGDKVKIVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSAC--DEMMALHDVCYAYDGGSKKQW 133          
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Match: A0A6C0FAJ1_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FAJ1_9ZZZZ)

HSP 1 Score: 94.7 bits (234), Expect = 1.140e-21
Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   52 WDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALKSNGTFT---RIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKK-SP--WLN 453
            W +V+Y T + + P      AKVV+V DGDT+ +A     T +   R   RL GID  E+ +KD  EK  G+KA+ I+     NK+V +SN+  +KYGR+LAD++++G NVT + +   +  V   Y+GGKK SP  WL+
Sbjct:   15 WSDVSYKTTEVFRPVFSK--AKVVKVYDGDTITVATPLQFTGSPVYRFSVRLRGIDCPEIRTKDADEKVCGQKARKIMLDQVMNKVVDVSNIDYDKYGRILADVSIDGVNVTEALITQNLAVV---YNGGKKNSPENWLD 149          
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Match: A0A6C0LVU8_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LVU8_9ZZZZ)

HSP 1 Score: 80.9 bits (198), Expect = 2.490e-16
Identity = 48/129 (37.21%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   61 VTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALK---SNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKK 438
            + Y     ++P   G   KV++V DGDT+ +A K    N  + R   R++GID  E+  K E+EK     A+  +    + K+V L NV LEKYGR+LAD+ +EG N+  S +  ++     +YDGGKK
Sbjct:   30 IKYKETIPFIPPVTG--GKVIKVYDGDTITIASKMPWDNSPYYRFSVRINGIDCPEIKGKTENEKQCAILAREHVDHLVNGKIVHLENVSLEKYGRILADVFIEGVNIGQSLLEKRL---AVSYDGGKK 153          
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Match: A0A6C0HI73_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HI73_9ZZZZ)

HSP 1 Score: 77.8 bits (190), Expect = 3.580e-15
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   16 LSNLISRAGSTTWDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALK---SNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKSP--WL 450
            +SN      S  + N++YD    ++P       KV++V DGDT+ +A +   S     RI  RL+GID  E+  + + EK L +K +  L     NK+V L N   EKYGRLLAD+ ++G  V +++ M++       + G K  P  W+
Sbjct:   18 ISNTSIAVQSDDFTNISYDNTVPFVPPVT--YGKVIKVYDGDTITIAARLPYSKSAIYRIAVRLNGIDTPEIKGQTQKEKDLAKKIRDTLQTKLMNKIVQLKNTSSEKYGRLLADVYLDG--VCINEWMVEQGYAVRYHGGTKIRPTEWI 163          
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Match: A0A6C0AUH4_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AUH4_9ZZZZ)

HSP 1 Score: 77.0 bits (188), Expect = 4.060e-15
Identity = 49/139 (35.25%), Postives = 69/139 (49.64%), Query Frame = 1
Query:   43 STTWDNV----TYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKSPW 447
            S  WD++     Y  C K          KVV V DGDTV      NG   +  CRL G+D  E+ + ++ EKA G   + +L     NK+V +    L+KYGRLL  + ++G NV  +Q ++   +   AYDGG K  W
Sbjct:    2 SIEWDSIHDAPDYSDCVKGTTVE----GKVVSVYDGDTVKTIFPLNGVLYKWNCRLTGVDTPEIRTSNKKEKAFGYVVRDLLREKILNKVVQVKCDDLDKYGRLLTVIYIDGVNV--NQWLID-NEYAFAYDGGTKRSW 133          
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Match: A0A6C0IJ23_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IJ23_9ZZZZ)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-13
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   55 DNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALK---SNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKK 438
            D + YD C +++P  +   AKVV+V DGDT+ +A K         R   RL GIDA EL+S + +E+     +++ L     N+ V+L NV +EKYGRLLAD+     +V      L   +    Y GGKK
Sbjct:   29 DTIKYDDCARFIP--EIRYAKVVKVYDGDTITVACKYPIRGKQLYRFSVRLAGIDAPELNSNNSNERIHANVSRTNLQGLIFNETVSLENVRIEKYGRLLADVYFHDLHVN---AWLLDNEYAIPYYGGKK 154          
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Match: A0A6C0IRR9_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IRR9_9ZZZZ)

HSP 1 Score: 73.6 bits (179), Expect = 1.880e-13
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  118 VVRVIDGDTVHLALKS--NGT-FTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKK 438
            V++V DGDT+ +A K   NG+   R   RL+GIDA E+ +K   EK L   A+  L+     K ++L N+ +EKYGR+LAD+ ++G N  +S+ ML+   +   YDGG K
Sbjct:   58 VIKVYDGDTITIASKLPYNGSPLYRFSVRLNGIDAPEIRAKITEEKKLAIIARDTLSNQIMGKTISLENIAVEKYGRILADVIIDGQN--MSEYMLE-QKLAVKYDGGTK 164          
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Match: A0A6C0CPC4_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CPC4_9ZZZZ)

HSP 1 Score: 72.4 bits (176), Expect = 3.180e-13
Identity = 42/110 (38.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query:  115 KVVRVIDGDTVHLA--LKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKK 438
            +V++V DGDT+ +   +K++ T  +   RL+ ID  E+ +KD  EK +  KA+  +A     K+VTL NVGL+KYGRLLA + + G     S+++ +  ++  +YDGG K
Sbjct:   31 RVIKVYDGDTITILGRVKNSSTLYKFSVRLNRIDCPEMRTKDLKEKFVATKARDFVAELTLQKIVTLKNVGLDKYGRLLAHVYI-GKRCINSELIER--NLAVSYDGGTK 137          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163482 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYA9_9STRA7.940e-107100.00Putative nuclease n=2 Tax=Tribonema minus TaxID=30... [more]
A0A836CPX4_9STRA1.030e-7071.62Putative nuclease n=1 Tax=Tribonema minus TaxID=30... [more]
A0A835Z7E9_9STRA6.230e-3547.01FirrV-1-P2 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A6C0FAJ1_9ZZZZ1.140e-2140.71TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0LVU8_9ZZZZ2.490e-1637.21TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0HI73_9ZZZZ3.580e-1533.33TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0AUH4_9ZZZZ4.060e-1535.25TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0IJ23_9ZZZZ1.400e-1337.40TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0IRR9_9ZZZZ1.880e-1340.91TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0CPC4_9ZZZZ3.180e-1338.18TNase-like domain-containing protein n=1 Tax=viral... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:328321..328779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163482|e_gw1.26.5.1
DescriptionCOG1525 Micrococcal nuclease (thermonuclease) homologs
COG categoryL
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG1525@1|root,COG1525@2|Bacteria,1R658@1224|Proteobacteria,2U0EH@28211|Alphaproteobacteria
Evalue1.08e-14
Seed ortholog1187851.A33M_0275
Hectar predicted targeting categoryother localisation
TranscriptId163804
TrackFilteredModels1
ProteinId163482
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163482gene_1859Tribonema minus UTEX_B_3156 geneContig_26 328321..328779 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1859_1exon_1859_1Tribonema minus UTEX_B_3156 exonContig_26 328321..328779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1859CDS_1859Tribonema minus UTEX_B_3156 CDSContig_26 328321..328779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163482Trimin1|163482|e_gw1.26.5.1Tribonema minus UTEX_B_3156 polypeptideContig_26 328321..328779 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1859 ID=mRNA_1859|Name=jgi.p|Trimin1|163482|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=459bp|location=Sequence derived from alignment at Contig_26:328321..328779+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATTACGCAAATTGAGCAACTTGATCTCCCGAGCCGGCAGCACCAC
TTGGGACAACGTAACGTATGATACGTGTGACAAGTACTTGCCCGCACACG
ACGGCGACGTCGCCAAGGTCGTTCGTGTGATAGATGGTGACACAGTGCAC
CTGGCCTTGAAAAGTAATGGCACGTTTACAAGGATTGTTTGCAGGCTGCA
CGGTATTGATGCTGCGGAGCTGCACTCTAAAGATGAGCACGAGAAGGCAC
TAGGGGAGAAAGCAAAGTCAATTTTGGCAGCAGCCTGTGACAACAAGCTA
GTAACTCTGTCGAATGTAGGGTTGGAGAAGTATGGCAGGCTGCTTGCGGA
CCTTACCGTTGAGGGGACGAATGTGACGCTATCGCAGGTAATGCTTAAAG
TCCCGGATGTATGTCACGCGTACGACGGGGGCAAGAAGAGCCCCTGGCTG
AACAAGTAG
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protein sequence of jgi.p|Trimin1|163482

>Trimin1|163482|e_gw1.26.5.1 ID=Trimin1|163482|e_gw1.26.5.1|Name=jgi.p|Trimin1|163482|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=153bp
MRLRKLSNLISRAGSTTWDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVH
LALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKL
VTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKSPWL
NK*
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mRNA from alignment at Contig_26:328321..328779+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1859 ID=mRNA_1859|Name=jgi.p|Trimin1|163482|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=459bp|location=Sequence derived from alignment at Contig_26:328321..328779+ (Tribonema minus UTEX_B_3156 )
ATGCGATTACGCAAATTGAGCAACTTGATCTCCCGAGCCGGCAGCACCAC TTGGGACAACGTAACGTATGATACGTGTGACAAGTACTTGCCCGCACACG ACGGCGACGTCGCCAAGGTCGTTCGTGTGATAGATGGTGACACAGTGCAC CTGGCCTTGAAAAGTAATGGCACGTTTACAAGGATTGTTTGCAGGCTGCA CGGTATTGATGCTGCGGAGCTGCACTCTAAAGATGAGCACGAGAAGGCAC TAGGGGAGAAAGCAAAGTCAATTTTGGCAGCAGCCTGTGACAACAAGCTA GTAACTCTGTCGAATGTAGGGTTGGAGAAGTATGGCAGGCTGCTTGCGGA CCTTACCGTTGAGGGGACGAATGTGACGCTATCGCAGGTAATGCTTAAAG TCCCGGATGTATGTCACGCGTACGACGGGGGCAAGAAGAGCCCCTGGCTG AACAAGTAG
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Coding sequence (CDS) from alignment at Contig_26:328321..328779+

>mRNA_1859 ID=mRNA_1859|Name=jgi.p|Trimin1|163482|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=459bp|location=Sequence derived from alignment at Contig_26:328321..328779+ (Tribonema minus UTEX_B_3156 )
ATGCGATTACGCAAATTGAGCAACTTGATCTCCCGAGCCGGCAGCACCAC
TTGGGACAACGTAACGTATGATACGTGTGACAAGTACTTGCCCGCACACG
ACGGCGACGTCGCCAAGGTCGTTCGTGTGATAGATGGTGACACAGTGCAC
CTGGCCTTGAAAAGTAATGGCACGTTTACAAGGATTGTTTGCAGGCTGCA
CGGTATTGATGCTGCGGAGCTGCACTCTAAAGATGAGCACGAGAAGGCAC
TAGGGGAGAAAGCAAAGTCAATTTTGGCAGCAGCCTGTGACAACAAGCTA
GTAACTCTGTCGAATGTAGGGTTGGAGAAGTATGGCAGGCTGCTTGCGGA
CCTTACCGTTGAGGGGACGAATGTGACGCTATCGCAGGTAATGCTTAAAG
TCCCGGATGTATGTCACGCGTACGACGGGGGCAAGAAGAGCCCCTGGCTG
AACAAGTAG
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