mRNA_18574 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181425
Unique NamemRNA_18574
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|181425 vs. uniprot
Match: A0A835Z0K7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K7_9STRA)

HSP 1 Score: 202 bits (514), Expect = 8.660e-66
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETEVCEPLPLAQNAKTLQHMCPHCCLXXXXXXXXXXALVRQSTAIHVSAQHKHVNHAQWSYFK 315
            RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETEVCEPLPLAQNAKTLQHMCPHCCLXXXXXXXXXXALVRQSTAIHVSAQHKHVNHAQWSYFK
Sbjct:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETEVCEPLPLAQNAKTLQHMCPHCCLXXXXXXXXXXALVRQSTAIHVSAQHKHVNHAQWSYFK 105
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BLAST of jgi.p|Trimin1|181425 vs. uniprot
Match: A0A093EUS7_TYTAL (HIT domain-containing protein (Fragment) n=1 Tax=Tyto alba TaxID=56313 RepID=A0A093EUS7_TYTAL)

HSP 1 Score: 70.5 bits (171), Expect = 4.840e-13
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETE-VCEPLPLAQNAKTLQHM 186
            R+GYHA+PS+  LHLHVISQD D  ++KT KHWN+F T FFL +E V E +      K   H+
Sbjct:   67 RLGYHAIPSMSQLHLHVISQDFDSPALKTKKHWNSFTTDFFLNSEDVIEMVRSKGKVKVKDHV 129
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BLAST of jgi.p|Trimin1|181425 vs. uniprot
Match: A0A8C4V838_FALTI (Aprataxin n=1 Tax=Falco tinnunculus TaxID=100819 RepID=A0A8C4V838_FALTI)

HSP 1 Score: 72.0 bits (175), Expect = 1.150e-12
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETEVCEPLPLAQN 165
            R+GYHA+PS+  LHLHVISQD D  ++KT KHWN+F T +FL +E  +P+    N
Sbjct:  256 RLGYHAIPSMSQLHLHVISQDFDSPALKTKKHWNSFTTDYFLNSEAGKPIQETGN 310
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BLAST of jgi.p|Trimin1|181425 vs. uniprot
Match: W7TK61_9STRA (Basic helix-loop-helix family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK61_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.710e-12
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETEVCEPLPLAQNAKTLQH 183
            R+GYH++PSL PLH+H++SQD D  ++KT +HWN+F TPFFL+    E         T++H
Sbjct:  394 RMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRH 454
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BLAST of jgi.p|Trimin1|181425 vs. uniprot
Match: A0A8C3UJ45_CATUS (Aprataxin n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3UJ45_CATUS)

HSP 1 Score: 68.9 bits (167), Expect = 1.750e-12
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETE 135
            R+GYHA+PS+  LHLHVISQD D  ++KT KHWN+F T +FL +E
Sbjct:  109 RLGYHAIPSMSQLHLHVISQDFDSPALKTKKHWNSFTTDYFLNSE 153
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BLAST of jgi.p|Trimin1|181425 vs. uniprot
Match: UPI000BF630ED (aprataxin-like n=1 Tax=Varroa jacobsoni TaxID=62625 RepID=UPI000BF630ED)

HSP 1 Score: 69.7 bits (169), Expect = 1.780e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETEV 138
            R+GYHAVPS+  LHLHVISQD D  S+KT KHWN+F T FF+++ V
Sbjct:   97 RLGYHAVPSMAQLHLHVISQDFDSPSLKTKKHWNSFTTAFFVDSGV 142
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BLAST of jgi.p|Trimin1|181425 vs. uniprot
Match: A0A7S2SCH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCH0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.280e-12
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETEV 138
            R GYHA+PSLEPLH+HVISQD D   +KT KHWN+F T +F+  EV
Sbjct:  345 RCGYHAIPSLEPLHIHVISQDFDSPCLKTKKHWNSFTTDYFVPCEV 390
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BLAST of jgi.p|Trimin1|181425 vs. uniprot
Match: A0A0V0GCY0_TRIDM (Putative aprataxin (Fragment) n=2 Tax=Triatominae TaxID=70999 RepID=A0A0V0GCY0_TRIDM)

HSP 1 Score: 68.9 bits (167), Expect = 2.670e-12
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETE 135
            R G+HA+PSL+ LHLHVIS D +  ++KT KHWN+F TPFFL+ E
Sbjct:   79 RYGFHAIPSLQRLHLHVISDDFNSSALKTAKHWNSFTTPFFLDAE 123
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BLAST of jgi.p|Trimin1|181425 vs. uniprot
Match: G1N246_MELGA (HIT domain-containing protein n=3 Tax=Neognathae TaxID=8825 RepID=G1N246_MELGA)

HSP 1 Score: 68.9 bits (167), Expect = 5.310e-12
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETE 135
            R+GYHA+PS+  LHLHVISQD D  ++KT KHWN+F T +FL +E
Sbjct:  123 RLGYHAIPSMSQLHLHVISQDFDSPALKTKKHWNSFTTEYFLNSE 167
[Close]
BLAST of jgi.p|Trimin1|181425 vs. uniprot
Match: UPI001C67E2FF (aprataxin isoform X2 n=2 Tax=Tyto alba TaxID=56313 RepID=UPI001C67E2FF)

HSP 1 Score: 70.5 bits (171), Expect = 5.610e-12
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETE-VCEPLPLAQNAKTLQHM 186
            R+GYHA+PS+  LHLHVISQD D  ++KT KHWN+F T FFL +E V E +      K   H+
Sbjct:  325 RLGYHAIPSMSQLHLHVISQDFDSPALKTKKHWNSFTTDFFLNSEDVIEMVRSKGKVKVKDHV 387
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181425 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0K7_9STRA8.660e-66100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A093EUS7_TYTAL4.840e-1352.38HIT domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A8C4V838_FALTI1.150e-1254.55Aprataxin n=1 Tax=Falco tinnunculus TaxID=100819 R... [more]
W7TK61_9STRA1.710e-1247.54Basic helix-loop-helix family protein n=2 Tax=Nann... [more]
A0A8C3UJ45_CATUS1.750e-1262.22Aprataxin n=1 Tax=Catharus ustulatus TaxID=91951 R... [more]
UPI000BF630ED1.780e-1265.22aprataxin-like n=1 Tax=Varroa jacobsoni TaxID=6262... [more]
A0A7S2SCH0_9STRA2.280e-1265.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0V0GCY0_TRIDM2.670e-1262.22Putative aprataxin (Fragment) n=2 Tax=Triatominae ... [more]
G1N246_MELGA5.310e-1262.22HIT domain-containing protein n=3 Tax=Neognathae T... [more]
UPI001C67E2FF5.610e-1252.38aprataxin isoform X2 n=2 Tax=Tyto alba TaxID=56313... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_256contigContig_256:93588..93905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181425|e_gw1.256.1.1
BRITEko00000,ko01000,ko03400
KEGG koko:K10863
EC3.1.11.7,3.1.11.8,3.1.12.2
GOsGO:0000012,GO:0000302,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006302,GO:0006396,GO:0006397,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0008380,GO:0008409,GO:0008967,GO:0009636,GO:0009987,GO:0010035,GO:0010467,GO:0016070,GO:0016071,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016796,GO:0016895,GO:0031647,GO:0031974,GO:0031981,GO:0033554,GO:0033699,GO:0034641,GO:0035312,GO:0042221,GO:0042493,GO:0042542,GO:0042578,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0046403,GO:0046483,GO:0046677,GO:0046872,GO:0047485,GO:0050896,GO:0051219,GO:0051716,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0098501,GO:0098506,GO:0098518,GO:0140097,GO:1901360,GO:1901363,GO:1901700
Preferred nameAPTX
DescriptionAprataxin isoform X1
COG categoryL
Max annot lvl33208|Metazoa
EggNOG OGsCOG0241@1|root,KOG0562@1|root,KOG0562@2759|Eukaryota,KOG2134@2759|Eukaryota,39FCZ@33154|Opisthokonta,3BIGM@33208|Metazoa,3D20F@33213|Bilateria,48AT2@7711|Chordata,495B4@7742|Vertebrata,4GS1A@8782|Aves
Evalue2.75e-12
Seed ortholog9031.ENSGALP00000003019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_003470.1
TranscriptId181747
TrackFilteredModels1
ProteinId181425
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181425gene_18574Tribonema minus UTEX_B_3156 geneContig_256 93588..93905 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18574_1exon_18574_1Tribonema minus UTEX_B_3156 exonContig_256 93588..93905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18574CDS_18574Tribonema minus UTEX_B_3156 CDSContig_256 93588..93905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181425Trimin1|181425|e_gw1.256.1.1Tribonema minus UTEX_B_3156 polypeptideContig_256 93588..93905 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18574 ID=mRNA_18574|Name=jgi.p|Trimin1|181425|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_256:93588..93905+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCGTCGGCTATCATGCGGTGCCGTCGCTTGAGCCTTTGCATCTGCACGT
CATCAGCCAGGATCTGGATGGGCATTCAATGAAGACCCCCAAGCACTGGA
ACACATTTGCCACGCCCTTTTTTCTGGAAACAGAGGTGTGTGAACCGCTT
CCATTGGCCCAGAATGCCAAAACACTGCAACATATGTGCCCCCACTGCTG
TCTTGAAACAGAGGTATGTGCACCGTGTCCATTGGCTCTAGTGCGCCAGA
GCACTGCAATACATGTTTCCGCGCAACATAAGCATGTGAACCACGCCCAA
TGGTCCTACTTTAAGTGA
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protein sequence of jgi.p|Trimin1|181425

>Trimin1|181425|e_gw1.256.1.1 ID=Trimin1|181425|e_gw1.256.1.1|Name=jgi.p|Trimin1|181425|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp
RVGYHAVPSLEPLHLHVISQDLDGHSMKTPKHWNTFATPFFLETEVCEPL
PLAQNAKTLQHMCPHCCLETEVCAPCPLALVRQSTAIHVSAQHKHVNHAQ
WSYFK*
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mRNA from alignment at Contig_256:93588..93905+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18574 ID=mRNA_18574|Name=jgi.p|Trimin1|181425|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_256:93588..93905+ (Tribonema minus UTEX_B_3156 )
CGCGTCGGCTATCATGCGGTGCCGTCGCTTGAGCCTTTGCATCTGCACGT
CATCAGCCAGGATCTGGATGGGCATTCAATGAAGACCCCCAAGCACTGGA
ACACATTTGCCACGCCCTTTTTTCTGGAAACAGAGGTGTGTGAACCGCTT
CCATTGGCCCAGAATGCCAAAACACTGCAACATATGTGCCCCCACTGCTG
TCTTGAAACAGAGGTATGTGCACCGTGTCCATTGGCTCTAGTGCGCCAGA
GCACTGCAATACATGTTTCCGCGCAACATAAGCATGTGAACCACGCCCAA
TGGTCCTACTTTAAGTGA
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Coding sequence (CDS) from alignment at Contig_256:93588..93905+

>mRNA_18574 ID=mRNA_18574|Name=jgi.p|Trimin1|181425|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_256:93588..93905+ (Tribonema minus UTEX_B_3156 )
CGCGTCGGCTATCATGCGGTGCCGTCGCTTGAGCCTTTGCATCTGCACGT
CATCAGCCAGGATCTGGATGGGCATTCAATGAAGACCCCCAAGCACTGGA
ACACATTTGCCACGCCCTTTTTTCTGGAAACAGAGGTGTGTGAACCGCTT
CCATTGGCCCAGAATGCCAAAACACTGCAACATATGTGCCCCCACTGCTG
TCTTGAAACAGAGGTATGTGCACCGTGTCCATTGGCTCTAGTGCGCCAGA
GCACTGCAATACATGTTTCCGCGCAACATAAGCATGTGAACCACGCCCAA
TGGTCCTACTTTAAGTGA
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