mRNA_183 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A836CGJ8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ8_9STRA) HSP 1 Score: 273 bits (697), Expect = 2.410e-93 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1
Query: 1 EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGVP 351
EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGVP
Sbjct: 1 EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGVP 117
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A835Z7X4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X4_9STRA) HSP 1 Score: 223 bits (568), Expect = 1.120e-73 Identity = 96/117 (82.05%), Postives = 104/117 (88.89%), Query Frame = 1
Query: 1 EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGVP 351
E QGALCYPSC+ GW GRLTRCV CP GFKDD VSGCIKPASYGRGAGYALWRE ACKKDNP+ GC+K GALWYPKCKAGYHNVGCCTCSPDCP +KDYG+GC+PP+K+RG GVP
Sbjct: 1 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQ-GCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 116
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A0V0QX94_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QX94_PSEPJ) HSP 1 Score: 137 bits (346), Expect = 1.510e-37 Identity = 63/117 (53.85%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 1 EHQGALCYPSCEGGW-NGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
E G + YP C+ G+ N C ECP+GF+DD + C KPA+YGRGAGYALW + C D GC+K GALWYPKC+ G+HNVGCC CSP+CP GW D G+ C P + G GV
Sbjct: 113 EKWGLIIYPKCKQGYTNWECCVCANECPSGFRDDGLY-CAKPAAYGRGAGYALWDKQKCF-DRHSQGCEKNGALWYPKCREGFHNVGCCICSPNCPSGWTDIGVSCKKPS-SYGRGV 226
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A8J8NKJ6_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NKJ6_HALGN) HSP 1 Score: 131 bits (329), Expect = 1.970e-35 Identity = 58/115 (50.43%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 1 EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSG 345
E GALCYP C+ G+ G + KP +YGRG GYA+W ED CK+DNP+LGC+K+GA+WYPKC+A +HNV CC CSPDCP G D GI C RG G
Sbjct: 43 EKNGALCYPWCKAGFYG-VGPXXXXXXXXXXXXXXXXXYKPEAYGRGVGYAIWNEDNCKRDNPELGCEKWGAVWYPKCRANFHNVACCICSPDCPSGMTDIGISCAKESYGRGVG 156
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: T0PRZ5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PRZ5_SAPDV) HSP 1 Score: 131 bits (329), Expect = 3.300e-34 Identity = 67/121 (55.37%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 1 EHQGALCYPSCEGGWNGRLTRCV---KECPA--GFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
E GALCYP C+ G+ + C+ K C G D VS C KP +YGRGAGYALW ED CK+++ + GC+K GALWYPKCKAG+HNVGCC CSPDCPE + D G C RG GV
Sbjct: 191 EAYGALCYPKCKDGYEA-VGCCICRKKGCGGVDGANDIGVS-CTKPKAYGRGAGYALWDEDKCKRESSQ-GCEKNGALWYPKCKAGFHNVGCCICSPDCPESFLDDGAYCRKDSYGRGVGV 308
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: T0PXL0_SAPDV (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PXL0_SAPDV) HSP 1 Score: 124 bits (310), Expect = 5.060e-33 Identity = 61/121 (50.41%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 EHQGALCYPSCEGGWNGRLTRCV---KECPA--GFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
E GALCYP C+ G+ ++ C+ K C G D VS C KP +YGRG GYALW +D C +NP+ GC+K G +WYPKCK G+HN GCC C+PDCP G D G C RG+GV
Sbjct: 9 EAYGALCYPKCKEGYE-KVGCCICRKKGCSGAEGVHDIGVS-CTKPKAYGRGVGYALWNQDKCVAENPQ-GCEKNGLMWYPKCKPGFHNFGCCICTPDCPAGTHDDGAFCRKDHYGRGAGV 126
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A1V9YIT2_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIT2_9STRA) HSP 1 Score: 128 bits (321), Expect = 7.100e-33 Identity = 64/121 (52.89%), Postives = 76/121 (62.81%), Query Frame = 1
Query: 1 EHQGALCYPSCEGGWNGRLTRCV---KECPA--GFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
E GALCYP C+ G+ + C+ K C G D VS C KPA+YGRG+GYA+W ED C K+N + GC+K GA+WYPKC G+HNVGCC CSPDCP G D G C RG GV
Sbjct: 217 ESYGALCYPKCKEGYEA-IGCCICRKKGCSGVDGVTDIGVS-CTKPAAYGRGSGYAIWNEDKCNKENAQ-GCEKNGAMWYPKCGKGFHNVGCCICSPDCPSGTTDDGAYCRKDSYGRGVGV 334
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A0A7CMW5_9STRA (Secreted protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CMW5_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.460e-32 Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query: 1 EHQGALCYPSCEGGWNG-RLTRCVKECPAGFK---DDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
E GALCYP C+ G+ C K+ G K D VS C KP++YGRG+GYA+W +D C ++N + GC+K GA+WYPKC+ G+HNVGCC CSPDCPEG+ D G C RG GV
Sbjct: 221 EAWGALCYPKCKEGYESVGCCICRKKGCGGVKGATDIGVS-CAKPSAYGRGSGYAIWNQDKCNRENAQ-GCEKNGAMWYPKCEKGFHNVGCCICSPDCPEGYHDDGAFCRKDHYGRGVGV 338
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A067BJF9_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BJF9_SAPPC) HSP 1 Score: 127 bits (318), Expect = 2.150e-32 Identity = 63/120 (52.50%), Postives = 78/120 (65.00%), Query Frame = 1
Query: 1 EHQGALCYPSCEGGWNG-RLTRCVKECPAGFK---DDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
E GALCYP C+ G+ C K+ G K D VS C KP++YGRG+GYA+W E CK++N + GC+K GA+WYPKC+ G+HNVGCC CSPDCPEG+ D G C RG GV
Sbjct: 225 EAWGALCYPKCKEGYESVGCCICRKKGCGGVKGATDIGVS-CAKPSAYGRGSGYAIWNEGKCKRENGQ-GCEKNGAMWYPKCEKGFHNVGCCICSPDCPEGFHDDGAFCRKDHYGRGVGV 342
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A418AM88_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AM88_9STRA) HSP 1 Score: 127 bits (320), Expect = 2.260e-32 Identity = 65/120 (54.17%), Postives = 77/120 (64.17%), Query Frame = 1
Query: 1 EHQGALCYPSCEGGWN--GRLTRCVKECPA--GFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
E GALCYP+C+ G+ G + K C G D VS C KPA+YGRGAGYALW+ED CKK+N + C+K G +WYP CKAG+H+VGCCTCSPDCP G D G C G GV
Sbjct: 281 EANGALCYPTCKEGYEKVGCCSCRKKGCSGVQGVTDIGVS-CTKPAAYGRGAGYALWQEDTCKKENGGM-CEKNGLMWYPPCKAGFHSVGCCTCSPDCPAGTTDDGAFCRKDSYGVGVGV 398 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_183 ID=mRNA_183|Name=jgi.p|Trimin1|150572|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_3:660196..660546- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGCATCAAGGTGCCCTATGCTACCCGAGTTGTGAAGGAGGTTGGAACGGback to top protein sequence of jgi.p|Trimin1|150572 >Trimin1|150572|gw1.3.390.1 ID=Trimin1|150572|gw1.3.390.1|Name=jgi.p|Trimin1|150572|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYback to top mRNA from alignment at Contig_3:660196..660546- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_183 ID=mRNA_183|Name=jgi.p|Trimin1|150572|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_3:660196..660546- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:660196..660546- >mRNA_183 ID=mRNA_183|Name=jgi.p|Trimin1|150572|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_3:660196..660546- (Tribonema minus UTEX_B_3156 )back to top |