mRNA_183 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150572
Unique NamemRNA_183
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A836CGJ8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ8_9STRA)

HSP 1 Score: 273 bits (697), Expect = 2.410e-93
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1
Query:    1 EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGVP 351
            EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGVP
Sbjct:    1 EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGVP 117          
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A835Z7X4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X4_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.120e-73
Identity = 96/117 (82.05%), Postives = 104/117 (88.89%), Query Frame = 1
Query:    1 EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGVP 351
            E QGALCYPSC+ GW GRLTRCV  CP GFKDD VSGCIKPASYGRGAGYALWRE ACKKDNP+ GC+K GALWYPKCKAGYHNVGCCTCSPDCP  +KDYG+GC+PP+K+RG GVP
Sbjct:    1 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQ-GCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 116          
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A0V0QX94_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QX94_PSEPJ)

HSP 1 Score: 137 bits (346), Expect = 1.510e-37
Identity = 63/117 (53.85%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 EHQGALCYPSCEGGW-NGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
            E  G + YP C+ G+ N     C  ECP+GF+DD +  C KPA+YGRGAGYALW +  C  D    GC+K GALWYPKC+ G+HNVGCC CSP+CP GW D G+ C  P  + G GV
Sbjct:  113 EKWGLIIYPKCKQGYTNWECCVCANECPSGFRDDGLY-CAKPAAYGRGAGYALWDKQKCF-DRHSQGCEKNGALWYPKCREGFHNVGCCICSPNCPSGWTDIGVSCKKPS-SYGRGV 226          
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A8J8NKJ6_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NKJ6_HALGN)

HSP 1 Score: 131 bits (329), Expect = 1.970e-35
Identity = 58/115 (50.43%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    1 EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSG 345
            E  GALCYP C+ G+ G +                    KP +YGRG GYA+W ED CK+DNP+LGC+K+GA+WYPKC+A +HNV CC CSPDCP G  D GI C      RG G
Sbjct:   43 EKNGALCYPWCKAGFYG-VGPXXXXXXXXXXXXXXXXXYKPEAYGRGVGYAIWNEDNCKRDNPELGCEKWGAVWYPKCRANFHNVACCICSPDCPSGMTDIGISCAKESYGRGVG 156          
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: T0PRZ5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PRZ5_SAPDV)

HSP 1 Score: 131 bits (329), Expect = 3.300e-34
Identity = 67/121 (55.37%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 EHQGALCYPSCEGGWNGRLTRCV---KECPA--GFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
            E  GALCYP C+ G+   +  C+   K C    G  D  VS C KP +YGRGAGYALW ED CK+++ + GC+K GALWYPKCKAG+HNVGCC CSPDCPE + D G  C      RG GV
Sbjct:  191 EAYGALCYPKCKDGYEA-VGCCICRKKGCGGVDGANDIGVS-CTKPKAYGRGAGYALWDEDKCKRESSQ-GCEKNGALWYPKCKAGFHNVGCCICSPDCPESFLDDGAYCRKDSYGRGVGV 308          
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: T0PXL0_SAPDV (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PXL0_SAPDV)

HSP 1 Score: 124 bits (310), Expect = 5.060e-33
Identity = 61/121 (50.41%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 EHQGALCYPSCEGGWNGRLTRCV---KECPA--GFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
            E  GALCYP C+ G+  ++  C+   K C    G  D  VS C KP +YGRG GYALW +D C  +NP+ GC+K G +WYPKCK G+HN GCC C+PDCP G  D G  C      RG+GV
Sbjct:    9 EAYGALCYPKCKEGYE-KVGCCICRKKGCSGAEGVHDIGVS-CTKPKAYGRGVGYALWNQDKCVAENPQ-GCEKNGLMWYPKCKPGFHNFGCCICTPDCPAGTHDDGAFCRKDHYGRGAGV 126          
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A1V9YIT2_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIT2_9STRA)

HSP 1 Score: 128 bits (321), Expect = 7.100e-33
Identity = 64/121 (52.89%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 EHQGALCYPSCEGGWNGRLTRCV---KECPA--GFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
            E  GALCYP C+ G+   +  C+   K C    G  D  VS C KPA+YGRG+GYA+W ED C K+N + GC+K GA+WYPKC  G+HNVGCC CSPDCP G  D G  C      RG GV
Sbjct:  217 ESYGALCYPKCKEGYEA-IGCCICRKKGCSGVDGVTDIGVS-CTKPAAYGRGSGYAIWNEDKCNKENAQ-GCEKNGAMWYPKCGKGFHNVGCCICSPDCPSGTTDDGAYCRKDSYGRGVGV 334          
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A0A7CMW5_9STRA (Secreted protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CMW5_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.460e-32
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 EHQGALCYPSCEGGWNG-RLTRCVKECPAGFK---DDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
            E  GALCYP C+ G+       C K+   G K   D  VS C KP++YGRG+GYA+W +D C ++N + GC+K GA+WYPKC+ G+HNVGCC CSPDCPEG+ D G  C      RG GV
Sbjct:  221 EAWGALCYPKCKEGYESVGCCICRKKGCGGVKGATDIGVS-CAKPSAYGRGSGYAIWNQDKCNRENAQ-GCEKNGAMWYPKCEKGFHNVGCCICSPDCPEGYHDDGAFCRKDHYGRGVGV 338          
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A067BJF9_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BJF9_SAPPC)

HSP 1 Score: 127 bits (318), Expect = 2.150e-32
Identity = 63/120 (52.50%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 EHQGALCYPSCEGGWNG-RLTRCVKECPAGFK---DDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
            E  GALCYP C+ G+       C K+   G K   D  VS C KP++YGRG+GYA+W E  CK++N + GC+K GA+WYPKC+ G+HNVGCC CSPDCPEG+ D G  C      RG GV
Sbjct:  225 EAWGALCYPKCKEGYESVGCCICRKKGCGGVKGATDIGVS-CAKPSAYGRGSGYAIWNEGKCKRENGQ-GCEKNGAMWYPKCEKGFHNVGCCICSPDCPEGFHDDGAFCRKDHYGRGVGV 342          
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Match: A0A418AM88_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AM88_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.260e-32
Identity = 65/120 (54.17%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 EHQGALCYPSCEGGWN--GRLTRCVKECPA--GFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGV 348
            E  GALCYP+C+ G+   G  +   K C    G  D  VS C KPA+YGRGAGYALW+ED CKK+N  + C+K G +WYP CKAG+H+VGCCTCSPDCP G  D G  C       G GV
Sbjct:  281 EANGALCYPTCKEGYEKVGCCSCRKKGCSGVQGVTDIGVS-CTKPAAYGRGAGYALWQEDTCKKENGGM-CEKNGLMWYPPCKAGFHSVGCCTCSPDCPAGTTDDGAFCRKDSYGVGVGV 398          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150572 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGJ8_9STRA2.410e-93100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z7X4_9STRA1.120e-7382.05Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A0V0QX94_PSEPJ1.510e-3753.85Uncharacterized protein n=1 Tax=Pseudocohnilembus ... [more]
A0A8J8NKJ6_HALGN1.970e-3550.43Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
T0PRZ5_SAPDV3.300e-3455.37Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
T0PXL0_SAPDV5.060e-3350.41Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A1V9YIT2_9STRA7.100e-3352.89Uncharacterized protein n=2 Tax=Achlya hypogyna Ta... [more]
A0A0A7CMW5_9STRA1.460e-3251.67Secreted protein n=1 Tax=Achlya hypogyna TaxID=120... [more]
A0A067BJF9_SAPPC2.150e-3252.50Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A418AM88_9STRA2.260e-3254.17Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:660196..660546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150572|gw1.3.390.1
Max annot lvl2759|Eukaryota
EggNOG OGs2DTY2@1|root,2S6IW@2759|Eukaryota
Evalue8.3e-34
Seed ortholog112098.XP_008616411.1
Hectar predicted targeting categoryother localisation
TranscriptId150894
TrackFilteredModels1
ProteinId150572
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150572gene_183Tribonema minus UTEX_B_3156 geneContig_3 660196..660546 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_183_1exon_183_1Tribonema minus UTEX_B_3156 exonContig_3 660196..660546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_183CDS_183Tribonema minus UTEX_B_3156 CDSContig_3 660196..660546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150572Trimin1|150572|gw1.3.390.1Tribonema minus UTEX_B_3156 polypeptideContig_3 660196..660546 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_183 ID=mRNA_183|Name=jgi.p|Trimin1|150572|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_3:660196..660546- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGCATCAAGGTGCCCTATGCTACCCGAGTTGTGAAGGAGGTTGGAACGG
TCGCTTAACGAGGTGCGTGAAGGAGTGCCCTGCTGGATTCAAAGACGACA
ACGTCAGCGGATGTATTAAGCCTGCATCGTATGGGCGCGGCGCAGGGTAC
GCATTGTGGAGAGAGGACGCCTGCAAGAAAGACAACCCTAAGCTAGGATG
CCAAAAGTACGGAGCACTATGGTACCCCAAGTGCAAAGCAGGCTACCACA
ACGTAGGCTGTTGCACGTGTTCGCCCGATTGCCCCGAAGGGTGGAAAGAT
TACGGCATAGGGTGTACTCCGCCCATGAAGAATAGAGGCTCCGGCGTCCC
T
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protein sequence of jgi.p|Trimin1|150572

>Trimin1|150572|gw1.3.390.1 ID=Trimin1|150572|gw1.3.390.1|Name=jgi.p|Trimin1|150572|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGY
ALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKD
YGIGCTPPMKNRGSGVP
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mRNA from alignment at Contig_3:660196..660546-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_183 ID=mRNA_183|Name=jgi.p|Trimin1|150572|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_3:660196..660546- (Tribonema minus UTEX_B_3156 )
GAGCATCAAGGTGCCCTATGCTACCCGAGTTGTGAAGGAGGTTGGAACGG TCGCTTAACGAGGTGCGTGAAGGAGTGCCCTGCTGGATTCAAAGACGACA ACGTCAGCGGATGTATTAAGCCTGCATCGTATGGGCGCGGCGCAGGGTAC GCATTGTGGAGAGAGGACGCCTGCAAGAAAGACAACCCTAAGCTAGGATG CCAAAAGTACGGAGCACTATGGTACCCCAAGTGCAAAGCAGGCTACCACA ACGTAGGCTGTTGCACGTGTTCGCCCGATTGCCCCGAAGGGTGGAAAGAT TACGGCATAGGGTGTACTCCGCCCATGAAGAATAGAGGCTCCGGCGTCCC T
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Coding sequence (CDS) from alignment at Contig_3:660196..660546-

>mRNA_183 ID=mRNA_183|Name=jgi.p|Trimin1|150572|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_3:660196..660546- (Tribonema minus UTEX_B_3156 )
GAGCATCAAGGTGCCCTATGCTACCCGAGTTGTGAAGGAGGTTGGAACGG
TCGCTTAACGAGGTGCGTGAAGGAGTGCCCTGCTGGATTCAAAGACGACA
ACGTCAGCGGATGTATTAAGCCTGCATCGTATGGGCGCGGCGCAGGGTAC
GCATTGTGGAGAGAGGACGCCTGCAAGAAAGACAACCCTAAGCTAGGATG
CCAAAAGTACGGAGCACTATGGTACCCCAAGTGCAAAGCAGGCTACCACA
ACGTAGGCTGTTGCACGTGTTCGCCCGATTGCCCCGAAGGGTGGAAAGAT
TACGGCATAGGGTGTACTCCGCCCATGAAGAATAGAGGCTCCGGCGTCCC
T
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