mRNA_18277 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354492
Unique NamemRNA_18277
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354492 vs. uniprot
Match: A0A835YYZ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ4_9STRA)

HSP 1 Score: 188 bits (477), Expect = 7.130e-57
Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 3 
Query:  372 AAERVCTTPELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAGXXXXXXLGMSGHR 671
            AAERVCTTPELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAG XXX  LGMSGHR
Sbjct:    4 AAERVCTTPELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAGGXXXGSLGMSGHR 103
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BLAST of jgi.p|Trimin1|354492 vs. uniprot
Match: A0A835Z234_9STRA (NDR and related serine/threonine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z234_9STRA)

HSP 1 Score: 161 bits (407), Expect = 7.730e-42
Identity = 85/97 (87.63%), Postives = 85/97 (87.63%), Query Frame = 2 
Query:   14 GVCTTPELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAGXXXXXXLGMSGHR 304
            G     ELLERLR    GDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAG XXX  LGMSGHR
Sbjct:  423 GSARRAELLERLRXXXXGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAGGXXXGSLGMSGHR 519
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BLAST of jgi.p|Trimin1|354492 vs. uniprot
Match: A0A6H5L5B9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5B9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.140e-10
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 2 
Query:    8 TRGVCTTPELLERLRRLSRGDEGFAAAVAALTANFEKFEESG--LWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANF 253
            T G     ++L +L +L  GD   AAAV  +T+NF+KF ++G   WE+  R A RRD+D +FIGYTYKR   +P R  +GG  F
Sbjct:  496 TDGAARVKDVLAQLSKLEPGDARQAAAVELVTSNFDKFSDNGEVRWEKAARVAQRRDRDNDFIGYTYKRKVNKPDRGGLGGDLF 579
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BLAST of jgi.p|Trimin1|354492 vs. uniprot
Match: A0A7S2UWM6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWM6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.150e-6
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 2 
Query:   35 LLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGAN 250
            +LE++  ++ GD      VA +T NF+ FEE G     ++ A RRDKDQNFIGYT+KR    P +   GG N
Sbjct:  113 ILEQIGTMNAGDVNLPPLVAQITRNFDHFEEDGDRWGADKRAMRRDKDQNFIGYTFKRRD--PKKQQEGGGN 182
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354492 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YYZ4_9STRA7.130e-5797.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z234_9STRA7.730e-4287.63NDR and related serine/threonine kinase n=1 Tax=Tr... [more]
A0A6H5L5B9_9PHAE1.140e-1045.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UWM6_9STRA2.150e-644.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_255contigContig_255:58673..60365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354492|estExt_Genemark1.C_Ctg_2550007
Hectar predicted targeting categoryother localisation
TranscriptId354814
TrackFilteredModels1
ProteinId354492
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354492gene_18277Tribonema minus UTEX_B_3156 geneContig_255 58673..60365 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18277_2exon_18277_2Tribonema minus UTEX_B_3156 exonContig_255 58673..59249 -
exon_18277_1exon_18277_1Tribonema minus UTEX_B_3156 exonContig_255 59985..60365 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18277UTR3_18277Tribonema minus UTEX_B_3156 three_prime_UTRContig_255 58673..58956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18277CDS_18277Tribonema minus UTEX_B_3156 CDSContig_255 59985..60003 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_18277UTR5_18277Tribonema minus UTEX_B_3156 five_prime_UTRContig_255 60004..60365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354492Trimin1|354492|estExt_Genemark1.C_Ctg_2550007Tribonema minus UTEX_B_3156 polypeptideContig_255 58957..60003 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18277 ID=mRNA_18277|Name=jgi.p|Trimin1|354492|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=958bp|location=Sequence derived from alignment at Contig_255:58673..60365- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CATACATACCCGAGGGGTCTGCACGACGCCTGAGCTGCTGGAGAGGCTGC
GGCGGCTGAGCCGTGGCGACGAGGGGTTCGCCGCCGCCGTCGCCGCGCTC
ACCGCCAACTTTGAGAAGTTTGAGGAGAGCGGCCTGTGGGAGCAGCCGAA
CCGCGCCGCGCACCGCCGCGACAAGGACCAGAACTTCATAGGTTATACGT
ACAAACGCGCTCCGCAGCGGCCGGCACGCGCGGCCGTGGGGGGCGCCAAT
TTTGAGGGGGCCGGCGGCGGCGGCGGCGGGTCGCTCGGGATGAGCGGCCA
CCGCTGAGCATTGCTGCTGCTGCTGAGCTGCCGCAGCTGCTGCGTCTGCT
GCTTGCGTGGTGATGGTGGTCGCTGCGGAGCGGGTCTGCACGACGCCTGA
GCTGCTGGAGAGGCTGCGGCGGCTGAGCCGTGGCGACGAGGGGTTCGCCG
CCGCCGTCGCCGCGCTCACCGCCAACTTTGAGAAGTTTGAGGAGAGCGGC
CTGTGGGAGCAGCCGAACCGCGCCGCGCACCGCCGCGACAAGGACCAGAA
CTTCATAGGTTATACGTACAAACGCGCTCCGCAGCGGCCGGCACGCGCGG
CCGTGGGGGGCGCCAATTTTGAGGGGGCCGGCGGCGGCGGCGGCGGGTCG
CTCGGGATGAGCGGCCACCGCTGAGCATTGCTGCTGCTGCTGAGCTGCCG
CAGCTGCTGCGTCTGCTGCTTGCGTGGTGATGGTGCTCGCTGCGAAGCGC
GAGCGGTGCGGTTGAGCAATGTGGTGTGCAGCGCGTAGCAGCTGCGGTGT
CCGTTTGTGCGGCGCTGCGCACGAAGTTGTGCTGTGTCTCGTTCCTAGAG
CCCTTCGAGTCTTATGTACAGATCCAGTTGCCTGTGGTTAGCGCGTGTGC
GCAGCCGGGTCATGGGGTGTGAATTCACGCACCCCACTAATATCACTTGT
GCTCCTTA
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protein sequence of jgi.p|Trimin1|354492

>Trimin1|354492|estExt_Genemark1.C_Ctg_2550007 ID=Trimin1|354492|estExt_Genemark1.C_Ctg_2550007|Name=jgi.p|Trimin1|354492|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp
MVVAAERVCTTPELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQ
PNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAGGGGGGSLGMS
GHR*
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mRNA from alignment at Contig_255:58673..60365-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18277 ID=mRNA_18277|Name=jgi.p|Trimin1|354492|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1693bp|location=Sequence derived from alignment at Contig_255:58673..60365- (Tribonema minus UTEX_B_3156 )
CATACATACCCGAGGGGTCTGCACGACGCCTGAGCTGCTGGAGAGGCTGC
GGCGGCTGAGCCGTGGCGACGAGGGGTTCGCCGCCGCCGTCGCCGCGCTC
ACCGCCAACTTTGAGAAGTTTGAGGAGAGCGGCCTGTGGGAGCAGCCGAA
CCGCGCCGCGCACCGCCGCGACAAGGACCAGAACTTCATAGGTTATACGT
ACAAACGCGCTCCGCAGCGGCCGGCACGCGCGGCCGTGGGGGGCGCCAAT
TTTGAGGGGGCCGGCGGCGGCGGCGGCGGGTCGCTCGGGATGAGCGGCCA
CCGCTGAGCATTGCTGCTGCTGCTGAGCTGCCGCAGCTGCTGCGTCTGCT
GCTTGCGTGGTGATGGTGGTCGCTGCGGAGCGTGAGCGGTGCGGTTGAGC
AATGTGGTGTGCAGCGCGTAGCAGCTGCGGTGTCCGCTTGTGCGGCGCTG
CGCACGAAGTTGTGCTGTGTCTCGTTCCTAGAGCCCTTCGAGTCTTATGT
ACAGATCCAGTTGCCTGTGGTTAGCGCGTGTGCGCAGCCGGGTCATGGGG
TGTGTCCTCACACATCCCACTAATATCACTTGTACTCGTTACTCGCCACA
TACTGCCAACAGCAAGCGTGTCAGCCAATGTGTATGCTGTGCTCTTGCAT
TTATGAATGGCTGTTCCGTTTTTCAAAAAGATGGCGTGCACATCCCATTT
GCCACGTCACATTGGGGAAGTTGCCATGCACTCATGGGAGAGACGCTGGT
GTAAATATATGAGATTGAACAATGGCAGCGCAAATCTTGCGCATCACGAG
AAGGCTAGGTACTTGGTACTTCACGGCTGAACTTCAACACCTCGATCTTT
CCTTGAAAAAACAAGAAAAATGAGGATTTTTTTATATAAAATTTGCGCAG
GTGAAGATCCACAGTGTTGTAGCAGGCTGGGGAGAGCCTTCTCCAAACTG
AAACTCGGCCCAAAGCTCGTACGCACACAGGTGGCTGCCTCGCCATGCTT
GGCATCATATCTAGTCGGCTGCAACGCTGCATCGCCTAGGAGGCTACACG
CCTTTTTTTGGGGCGGGCATGGACTGGTCACGTATTCGCGAGCTAAGGTC
GCCATACATACCCGAGGGGTCTGCACGACGCCTGAGCTGCTGGAGAGGCT
GCGGCGGCTGAGCCGTGGCGACGAGGGGTTCGCCGCCGCCGTCGCCGCGC
TCACCGCCAACTTTGAGAAGTTTGAGGAGAGCGGCCTGTGGGAGCAGCCG
AACCGCGCCGCGCACCGCCGCGACAAGGACCAGAACTTCATAGGTTATAC
GTACAAACGCGCTCCGCAGCGGCCGGCACGCGCGGCCGTGGGGGGCGCCA
ATTTTGAGGGGGCCGGCGGCGGCGGCGGCGGGTCGCTCGGGATGAGCGGC
CACCGCTGAGCATTGCTGCTGCTGCTGAGCTGCCGCAGCTGCTGCGTCTG
CTGCTTGCGTGGTGATGGTGCTCGCTGCGAAGCGCGAGCGGTGCGGTTGA
GCAATGTGGTGTGCAGCGCGTAGCAGCTGCGGTGTCCGTTTGTGCGGCGC
TGCGCACGAAGTTGTGCTGTGTCTCGTTCCTAGAGCCCTTCGAGTCTTAT
GTACAGATCCAGTTGCCTGTGGTTAGCGCGTGTGCGCAGCCGGGTCATGG
GGTGTGAATTCACGCACCCCACTAATATCACTTGTGCTCCTTA
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Coding sequence (CDS) from alignment at Contig_255:58673..60365-

>mRNA_18277 ID=mRNA_18277|Name=jgi.p|Trimin1|354492|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=312bp|location=Sequence derived from alignment at Contig_255:58673..60365- (Tribonema minus UTEX_B_3156 )
ATGGTGGTCGCTGCGGAGCGGGTCTGCACGACGCCTGAGCTGCTGGAGAG
GCTGCGGCGGCTGAGCCGTGGCGACGAGGGGTTCGCCGCCGCCGTCGCCG
CGCTCACCGCCAACTTTGAGAAGTTTGAGGAGAGCGGCCTGTGGGAGCAG
CCGAACCGCGCCGCGCACCGCCGCGACAAGGACCAGAACTTCATAGGTTA
TACGTACAAACGCGCTCCGCAGCGGCCGGCACGCGCGGCCGTGGGGGGCG
CCAATTTTGAGGGGGCCGGCGGCGGCGGCGGCGGGTCGCTCGGGATGAGC
GGCCACCGCTGA
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