mRNA_18090 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A836CJ53_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ53_9STRA) HSP 1 Score: 209 bits (533), Expect = 5.030e-69 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 Query: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYENM 285 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYENM Sbjct: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYENM 95
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A835YS76_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS76_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.610e-55 Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 1 Query: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYEN 282 CECDG YIT EP P C+YHQKSQLTTFLISFFVG LGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWW+VDFIRV+VNAFPDGND+PLY+N Sbjct: 43 CECDGGYITREPYPP---CDYHQKSQLTTFLISFFVGWLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWIVDFIRVIVNAFPDGNDLPLYDN 133
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A836CAI3_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI3_9STRA) HSP 1 Score: 140 bits (354), Expect = 9.080e-42 Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1 Query: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 273 CECDG Y+TH+P+ T ICNYH+K +LT FL+ FFVG GVDWFYLAV NPWYIVAGV+KL+T G IWWLVD+ R+LV+AFP GN V L Sbjct: 1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 91
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A836C9M7_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M7_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.380e-34 Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 1 Query: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 273 CEC+ Y++ + + CNY QKS+L TFL+SFFVG LG DWFYLA G+ YIVAGV KLI GGFGIWWL+D+IR+L NAFPDGN V L Sbjct: 27 CECNTGYVSTD----SLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 113
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A813W5K7_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813W5K7_ADIRI) HSP 1 Score: 123 bits (309), Expect = 2.280e-34 Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1 Query: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 273 C+CD +I + QT+ CNY QKSQL +FL+SFF+G G DW+YL+VGN YI + K++T GGFGIWWLVD+IR+L NAFPDGN PL Sbjct: 40 CKCDRGWINSKD--QTNYCNYEQKSQLASFLLSFFLGLFGADWYYLSVGNGGYIAGAIFKMLTLGGFGIWWLVDWIRILTNAFPDGNGQPL 128
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A835Z690_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z690_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.600e-32 Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 1 Query: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 273 CECD Y++ + + C+Y QKS+L FL+SFFV +G DWFYLA G+ YIV GV KL+T GGFG+WWLVD+IR+L AFPDGN V L Sbjct: 1 CECDTGYVSIDSEA----CSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 87
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A814T286_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814T286_9BILA) HSP 1 Score: 117 bits (293), Expect = 7.560e-32 Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 1 Query: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYE 279 C C +IT D T C Y QK +LT FL+SFFVG GVDWFYL+V NP YI+AG++KLIT GGFGIWW+VD+IR+L +AF DGN PL + Sbjct: 47 CICSKGWIT--TDLSTG-CTYQQKLKLTAFLLSFFVGFFGVDWFYLSVSNPAYIIAGIIKLITLGGFGIWWIVDWIRLLADAFLDGNGFPLLD 136
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A821WFW2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821WFW2_9BILA) HSP 1 Score: 114 bits (284), Expect = 1.810e-30 Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 1 Query: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYE 279 C C+ + + PQ IC Y QKS+L FL+SFFVG LG DWFYL+VGN YI AGV K++T GG GIWWLVD++R+L N+F DG V L E Sbjct: 48 CLCERGWTLSQSQPQ--ICTYQQKSKLAAFLLSFFVGGLGADWFYLSVGNGGYIAAGVFKMLTLGGIGIWWLVDWMRILTNSFLDGQGVALLE 138
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A817E2Q2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817E2Q2_9BILA) HSP 1 Score: 111 bits (278), Expect = 1.470e-29 Identity = 51/93 (54.84%), Postives = 63/93 (67.74%), Query Frame = 1 Query: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYE 279 C C+ + + PQ IC Y QKS+L FL+SFFVG G DWFYL+VGN YI AGV K++T GG GIWW VD++R+L N+F DG V L E Sbjct: 48 CLCERGWTLSQSQPQ--ICTYQQKSKLAAFLLSFFVGGFGADWFYLSVGNGGYIAAGVFKMLTLGGIGIWWFVDWVRILTNSFLDGQGVALLE 138
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A818VPD2_9BILA (Hypothetical protein n=3 Tax=Adineta steineri TaxID=433720 RepID=A0A818VPD2_9BILA) HSP 1 Score: 111 bits (277), Expect = 1.920e-29 Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1 Query: 55 CNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 273 C Y QKS+LT FL+SFF+G GVDWFYL+ GN YI+AG++KLIT G GIWWLVD+IR+L NAF DGN +PL Sbjct: 61 CTYQQKSKLTAFLLSFFLGIFGVDWFYLSCGNFAYIIAGIIKLITLGACGIWWLVDWIRLLANAFQDGNGMPL 133 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18090 ID=mRNA_18090|Name=jgi.p|Trimin1|135414|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_216:144440..144724- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGCGAGTGCGACGGCAGCTACATTACGCACGAGCCCGACCCGCAGACGAGback to top protein sequence of jgi.p|Trimin1|135414 >Trimin1|135414|gw1.216.16.1 ID=Trimin1|135414|gw1.216.16.1|Name=jgi.p|Trimin1|135414|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNback to top mRNA from alignment at Contig_216:144440..144724- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18090 ID=mRNA_18090|Name=jgi.p|Trimin1|135414|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_216:144440..144724- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_216:144440..144724- >mRNA_18090 ID=mRNA_18090|Name=jgi.p|Trimin1|135414|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_216:144440..144724- (Tribonema minus UTEX_B_3156 )back to top |