mRNA_18090 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135414
Unique NamemRNA_18090
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A836CJ53_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ53_9STRA)

HSP 1 Score: 209 bits (533), Expect = 5.030e-69
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1
Query:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYENM 285
            CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYENM
Sbjct:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYENM 95          
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A835YS76_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS76_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.610e-55
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 1
Query:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYEN 282
            CECDG YIT EP P    C+YHQKSQLTTFLISFFVG LGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWW+VDFIRV+VNAFPDGND+PLY+N
Sbjct:   43 CECDGGYITREPYPP---CDYHQKSQLTTFLISFFVGWLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWIVDFIRVIVNAFPDGNDLPLYDN 133          
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A836CAI3_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 9.080e-42
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1
Query:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 273
            CECDG Y+TH+P+  T ICNYH+K +LT FL+ FFVG  GVDWFYLAV NPWYIVAGV+KL+T  G  IWWLVD+ R+LV+AFP GN V L
Sbjct:    1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 91          
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A836C9M7_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.380e-34
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 273
            CEC+  Y++ +    +  CNY QKS+L TFL+SFFVG LG DWFYLA G+  YIVAGV KLI  GGFGIWWL+D+IR+L NAFPDGN V L
Sbjct:   27 CECNTGYVSTD----SLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 113          
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A813W5K7_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813W5K7_ADIRI)

HSP 1 Score: 123 bits (309), Expect = 2.280e-34
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 273
            C+CD  +I  +   QT+ CNY QKSQL +FL+SFF+G  G DW+YL+VGN  YI   + K++T GGFGIWWLVD+IR+L NAFPDGN  PL
Sbjct:   40 CKCDRGWINSKD--QTNYCNYEQKSQLASFLLSFFLGLFGADWYYLSVGNGGYIAGAIFKMLTLGGFGIWWLVDWIRILTNAFPDGNGQPL 128          
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A835Z690_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z690_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.600e-32
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 273
            CECD  Y++ + +     C+Y QKS+L  FL+SFFV  +G DWFYLA G+  YIV GV KL+T GGFG+WWLVD+IR+L  AFPDGN V L
Sbjct:    1 CECDTGYVSIDSEA----CSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 87          
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A814T286_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814T286_9BILA)

HSP 1 Score: 117 bits (293), Expect = 7.560e-32
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYE 279
            C C   +IT   D  T  C Y QK +LT FL+SFFVG  GVDWFYL+V NP YI+AG++KLIT GGFGIWW+VD+IR+L +AF DGN  PL +
Sbjct:   47 CICSKGWIT--TDLSTG-CTYQQKLKLTAFLLSFFVGFFGVDWFYLSVSNPAYIIAGIIKLITLGGFGIWWIVDWIRLLADAFLDGNGFPLLD 136          
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A821WFW2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821WFW2_9BILA)

HSP 1 Score: 114 bits (284), Expect = 1.810e-30
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYE 279
            C C+  +   +  PQ  IC Y QKS+L  FL+SFFVG LG DWFYL+VGN  YI AGV K++T GG GIWWLVD++R+L N+F DG  V L E
Sbjct:   48 CLCERGWTLSQSQPQ--ICTYQQKSKLAAFLLSFFVGGLGADWFYLSVGNGGYIAAGVFKMLTLGGIGIWWLVDWMRILTNSFLDGQGVALLE 138          
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A817E2Q2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817E2Q2_9BILA)

HSP 1 Score: 111 bits (278), Expect = 1.470e-29
Identity = 51/93 (54.84%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYE 279
            C C+  +   +  PQ  IC Y QKS+L  FL+SFFVG  G DWFYL+VGN  YI AGV K++T GG GIWW VD++R+L N+F DG  V L E
Sbjct:   48 CLCERGWTLSQSQPQ--ICTYQQKSKLAAFLLSFFVGGFGADWFYLSVGNGGYIAAGVFKMLTLGGIGIWWFVDWVRILTNSFLDGQGVALLE 138          
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Match: A0A818VPD2_9BILA (Hypothetical protein n=3 Tax=Adineta steineri TaxID=433720 RepID=A0A818VPD2_9BILA)

HSP 1 Score: 111 bits (277), Expect = 1.920e-29
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1
Query:   55 CNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 273
            C Y QKS+LT FL+SFF+G  GVDWFYL+ GN  YI+AG++KLIT G  GIWWLVD+IR+L NAF DGN +PL
Sbjct:   61 CTYQQKSKLTAFLLSFFLGIFGVDWFYLSCGNFAYIIAGIIKLITLGACGIWWLVDWIRLLANAFQDGNGMPL 133          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135414 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ53_9STRA5.030e-69100.00TM2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835YS76_9STRA1.610e-5586.17TM2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CAI3_9STRA9.080e-4268.13TM2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A836C9M7_9STRA1.380e-3463.74TM2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A813W5K7_ADIRI2.280e-3459.34Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A835Z690_9STRA1.600e-3258.24TM2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A814T286_9BILA7.560e-3260.22Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 ... [more]
A0A821WFW2_9BILA1.810e-3056.99Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A817E2Q2_9BILA1.470e-2954.84Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A818VPD2_9BILA1.920e-2967.12Hypothetical protein n=3 Tax=Adineta steineri TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_216contigContig_216:144440..144724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135414|gw1.216.16.1
DescriptionTM2 domain protein
COG categoryS
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG2314@1|root,COG2314@2|Bacteria,2IQX1@201174|Actinobacteria
Evalue1.51e-12
Seed ortholog258052.JNYV01000004_gene4413
Hectar predicted targeting categoryother localisation
TranscriptId135736
TrackFilteredModels1
ProteinId135414
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135414gene_18090Tribonema minus UTEX_B_3156 geneContig_216 144440..144724 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18090_1exon_18090_1Tribonema minus UTEX_B_3156 exonContig_216 144440..144724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18090CDS_18090Tribonema minus UTEX_B_3156 CDSContig_216 144440..144724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135414Trimin1|135414|gw1.216.16.1Tribonema minus UTEX_B_3156 polypeptideContig_216 144440..144724 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18090 ID=mRNA_18090|Name=jgi.p|Trimin1|135414|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_216:144440..144724- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCGAGTGCGACGGCAGCTACATTACGCACGAGCCCGACCCGCAGACGAG
CATCTGCAACTACCACCAGAAATCACAGCTGACGACTTTCCTCATCTCAT
TTTTCGTGGGGTGCTTAGGCGTCGACTGGTTCTACTTGGCCGTCGGCAAC
CCGTGGTATATCGTCGCCGGCGTAGTAAAGCTCATCACGGCCGGCGGCTT
CGGGATTTGGTGGCTTGTGGATTTCATCCGCGTCCTCGTCAACGCCTTCC
CCGACGGCAACGACGTGCCGCTGTACGAGAACATG
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protein sequence of jgi.p|Trimin1|135414

>Trimin1|135414|gw1.216.16.1 ID=Trimin1|135414|gw1.216.16.1|Name=jgi.p|Trimin1|135414|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp
CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGN
PWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPLYENM
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mRNA from alignment at Contig_216:144440..144724-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18090 ID=mRNA_18090|Name=jgi.p|Trimin1|135414|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_216:144440..144724- (Tribonema minus UTEX_B_3156 )
TGCGAGTGCGACGGCAGCTACATTACGCACGAGCCCGACCCGCAGACGAG CATCTGCAACTACCACCAGAAATCACAGCTGACGACTTTCCTCATCTCAT TTTTCGTGGGGTGCTTAGGCGTCGACTGGTTCTACTTGGCCGTCGGCAAC CCGTGGTATATCGTCGCCGGCGTAGTAAAGCTCATCACGGCCGGCGGCTT CGGGATTTGGTGGCTTGTGGATTTCATCCGCGTCCTCGTCAACGCCTTCC CCGACGGCAACGACGTGCCGCTGTACGAGAACATG
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Coding sequence (CDS) from alignment at Contig_216:144440..144724-

>mRNA_18090 ID=mRNA_18090|Name=jgi.p|Trimin1|135414|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_216:144440..144724- (Tribonema minus UTEX_B_3156 )
TGCGAGTGCGACGGCAGCTACATTACGCACGAGCCCGACCCGCAGACGAG
CATCTGCAACTACCACCAGAAATCACAGCTGACGACTTTCCTCATCTCAT
TTTTCGTGGGGTGCTTAGGCGTCGACTGGTTCTACTTGGCCGTCGGCAAC
CCGTGGTATATCGTCGCCGGCGTAGTAAAGCTCATCACGGCCGGCGGCTT
CGGGATTTGGTGGCTTGTGGATTTCATCCGCGTCCTCGTCAACGCCTTCC
CCGACGGCAACGACGTGCCGCTGTACGAGAACATG
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