mRNA_18058 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131732
Unique NamemRNA_18058
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: A0A835Z3F4_9STRA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F4_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.230e-56
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1
Query:    1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGKRTIALIPRI 273
            HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGKRTIALIPRI
Sbjct:    1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGKRTIALIPRI 91          
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: A0A8J2S4B3_9CRUS (ATP-dependent DNA helicase n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2S4B3_9CRUS)

HSP 1 Score: 64.7 bits (156), Expect = 3.850e-10
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGKRT--IALIPRI 273
            H   S++T  +DDP +       ++ + D  G+P    + KVGA++++++N+N   GL NG R IIR++T+  I  E+  GK    I  IPR+
Sbjct:  946 HEYKSIDTIDSDDPQEIANYPAEILNTFDVSGLPTHILKLKVGAIIILLKNINSRQGLCNGTRLIIRSLTQHLIVAEIASGKNKGHIVYIPRM 1038          
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: A0A8J2S5V8_9CRUS (ATP-dependent DNA helicase n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2S5V8_9CRUS)

HSP 1 Score: 63.2 bits (152), Expect = 1.330e-9
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGK 246
            H   S++T  +DDP +       ++ + D  G+P    + KVGA++++++N+N   GL NG R IIR++T+  I  E+  GK
Sbjct:  809 HEYKSIDTIDSDDPQEIANYPAEILNTFDVSGLPTHILKLKVGAIIILLKNINSRQGLCNGTRLIIRSLTQHLIVAEIASGK 890          
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: UPI001EE04635 (ATP-dependent DNA helicase PIF1-like n=2 Tax=Daphnia TaxID=6668 RepID=UPI001EE04635)

HSP 1 Score: 62.0 bits (149), Expect = 3.310e-9
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 1
Query:    1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGKRT--IALIPRI 273
            H   S++T  +DDP + +     V+ S D  G+P    + KVGAV+++++N++   GL NG R IIR +    I  E+  GK    I  IPR+
Sbjct:  389 HEYRSIDTIDSDDPEEISNYPTEVLNSFDVSGIPTHLLKMKVGAVIILLKNIDSRQGLCNGTRLIIRALRENLIVAEIAAGKNKGHIVYIPRM 481          
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: UPI001EDF5CF5 (uncharacterized protein LOC124203505 n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDF5CF5)

HSP 1 Score: 57.8 bits (138), Expect = 5.240e-8
Identity = 28/82 (34.15%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGK 246
            H   S++T  +DDP + +     V+ S D   +P    + KVGAV+++++N++   GL NG R IIR +    I  E++ GK
Sbjct:  132 HEYRSIDTIDSDDPEEISNYPTKVLNSFDVSEIPTHLLKMKVGAVIILLKNIDSRQGLCNGTRLIIRVLRENLIVAEIVAGK 213          
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 7.780e-8
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   82 IDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGK 246
            I+APG P      K GA++  IRN++FD GLVNG+R +IR I+R+ I VE+L  +
Sbjct:  610 INAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKRGVIRGISRRVIDVEVLSDE 664          
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: A0A2G3AQN0_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQN0_CAPCH)

HSP 1 Score: 57.0 bits (136), Expect = 1.940e-7
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   13 SVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDG--KRTIALIPRI 273
            S+++  +DDP +   +    + SI   G+P      K+GA+V++IRN+N   GLVNG R IIR + +  + +E++ G  +  I  +PRI
Sbjct:  552 SIDSIISDDPTEAINVPLEFLNSITPSGLPPHKLNLKIGAIVMLIRNMNLGGGLVNGVRFIIRGMKQNSLKLEIITGVGQGNIVFLPRI 640          
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: UPI001EDEBA4E (uncharacterized protein LOC124196051 n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDEBA4E)

HSP 1 Score: 57.0 bits (136), Expect = 2.000e-7
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    4 VMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGK 246
            V  S++T  ++DP +       V+ + D  G+P      KVGAVV++++N++   GL NG R I++N+T   I  E+  GK
Sbjct: 1529 VYKSIDTIDSEDPGEIADYPAEVLNTFDVSGLPPHALHLKVGAVVILLKNIDTRQGLCNGTRLILKNLTDNLIVAEIASGK 1609          
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: UPI001F99873E (Uncharacterized protein n=2 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F99873E)

HSP 1 Score: 56.6 bits (135), Expect = 2.460e-7
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   73 MQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDG--KRTIALIPRI 273
            + +++  G PR     KVG+++++IRNV   SGL+NG R ++  + R+ I   +L G  K T ALIPRI
Sbjct:  190 LHAMNPQGYPRHKLELKVGSIIMLIRNVELQSGLLNGTRLVVTQLKRRTIKARILTGTHKNTEALIPRI 258          
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: UPI001F8B5F15 (Uncharacterized protein n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F8B5F15)

HSP 1 Score: 55.1 bits (131), Expect = 9.520e-7
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   73 MQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDG--KRTIALIPRI 273
            + +++  G PR     KVG+++++IRNV   SGL+NG R ++  + R+ I   +L G  K T ALIPRI
Sbjct: 1361 LHAMNPQGYPRHKLELKVGSIIMLIRNVEPQSGLLNGTRLVVTQLKRRTIKARILTGTHKNTEALIPRI 1429          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3F4_9STRA1.230e-56100.00ATP-dependent DNA helicase (Fragment) n=1 Tax=Trib... [more]
A0A8J2S4B3_9CRUS3.850e-1034.41ATP-dependent DNA helicase n=1 Tax=Daphnia galeata... [more]
A0A8J2S5V8_9CRUS1.330e-934.15ATP-dependent DNA helicase n=1 Tax=Daphnia galeata... [more]
UPI001EE046353.310e-935.48ATP-dependent DNA helicase PIF1-like n=2 Tax=Daphn... [more]
UPI001EDF5CF55.240e-834.15uncharacterized protein LOC124203505 n=1 Tax=Daphn... [more]
D8LCL4_ECTSI7.780e-849.09ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A2G3AQN0_CAPCH1.940e-734.83ATP-dependent DNA helicase n=1 Tax=Capsicum chinen... [more]
UPI001EDEBA4E2.000e-734.57uncharacterized protein LOC124196051 n=1 Tax=Daphn... [more]
UPI001F99873E2.460e-740.58Uncharacterized protein n=2 Tax=Dermatophagoides f... [more]
UPI001F8B5F159.520e-740.58Uncharacterized protein n=1 Tax=Dermatophagoides f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_215contigContig_215:177235..177507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131732|gw1.215.7.1
BRITEko00000,ko01000,ko03029,ko03032
KEGG koko:K15255
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
Evalue1.28e-08
Seed ortholog2880.D8LCL4
Hectar predicted targeting categoryother localisation
TranscriptId132054
TrackFilteredModels1
ProteinId131732
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131732gene_18058Tribonema minus UTEX_B_3156 geneContig_215 177235..177507 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18058_1exon_18058_1Tribonema minus UTEX_B_3156 exonContig_215 177235..177507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18058CDS_18058Tribonema minus UTEX_B_3156 CDSContig_215 177235..177507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131732Trimin1|131732|gw1.215.7.1Tribonema minus UTEX_B_3156 polypeptideContig_215 177235..177507 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18058 ID=mRNA_18058|Name=jgi.p|Trimin1|131732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_215:177235..177507- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CATGTAATGCACAGCGTCAACACAGCGTCCACTGACGACCCCATGGACAC
CAATTACATTGATGAAACAGTGATGCAGAGCATTGATGCTCCTGGAGTGC
CAAGGAGCACTGAGAGGTACAAGGTTGGAGCTGTAGTGGTGATCATCAGA
AATGTTAACTTTGACTCTGGCTTGGTCAACGGCCAACGTGCTATCATTCG
TAATATAACTAGAAAGTGCATCACAGTAGAGCTGCTAGATGGCAAGCGCA
CTATTGCACTCATCCCGCGCATC
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protein sequence of jgi.p|Trimin1|131732

>Trimin1|131732|gw1.215.7.1 ID=Trimin1|131732|gw1.215.7.1|Name=jgi.p|Trimin1|131732|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIR
NVNFDSGLVNGQRAIIRNITRKCITVELLDGKRTIALIPRI
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mRNA from alignment at Contig_215:177235..177507-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18058 ID=mRNA_18058|Name=jgi.p|Trimin1|131732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_215:177235..177507- (Tribonema minus UTEX_B_3156 )
CATGTAATGCACAGCGTCAACACAGCGTCCACTGACGACCCCATGGACAC CAATTACATTGATGAAACAGTGATGCAGAGCATTGATGCTCCTGGAGTGC CAAGGAGCACTGAGAGGTACAAGGTTGGAGCTGTAGTGGTGATCATCAGA AATGTTAACTTTGACTCTGGCTTGGTCAACGGCCAACGTGCTATCATTCG TAATATAACTAGAAAGTGCATCACAGTAGAGCTGCTAGATGGCAAGCGCA CTATTGCACTCATCCCGCGCATC
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Coding sequence (CDS) from alignment at Contig_215:177235..177507-

>mRNA_18058 ID=mRNA_18058|Name=jgi.p|Trimin1|131732|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_215:177235..177507- (Tribonema minus UTEX_B_3156 )
CATGTAATGCACAGCGTCAACACAGCGTCCACTGACGACCCCATGGACAC
CAATTACATTGATGAAACAGTGATGCAGAGCATTGATGCTCCTGGAGTGC
CAAGGAGCACTGAGAGGTACAAGGTTGGAGCTGTAGTGGTGATCATCAGA
AATGTTAACTTTGACTCTGGCTTGGTCAACGGCCAACGTGCTATCATTCG
TAATATAACTAGAAAGTGCATCACAGTAGAGCTGCTAGATGGCAAGCGCA
CTATTGCACTCATCCCGCGCATC
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