mRNA_18058 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: A0A835Z3F4_9STRA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F4_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.230e-56 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 Query: 1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGKRTIALIPRI 273 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGKRTIALIPRI Sbjct: 1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGKRTIALIPRI 91
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: A0A8J2S4B3_9CRUS (ATP-dependent DNA helicase n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2S4B3_9CRUS) HSP 1 Score: 64.7 bits (156), Expect = 3.850e-10 Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1 Query: 1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGKRT--IALIPRI 273 H S++T +DDP + ++ + D G+P + KVGA++++++N+N GL NG R IIR++T+ I E+ GK I IPR+ Sbjct: 946 HEYKSIDTIDSDDPQEIANYPAEILNTFDVSGLPTHILKLKVGAIIILLKNINSRQGLCNGTRLIIRSLTQHLIVAEIASGKNKGHIVYIPRM 1038
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: A0A8J2S5V8_9CRUS (ATP-dependent DNA helicase n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2S5V8_9CRUS) HSP 1 Score: 63.2 bits (152), Expect = 1.330e-9 Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 1 Query: 1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGK 246 H S++T +DDP + ++ + D G+P + KVGA++++++N+N GL NG R IIR++T+ I E+ GK Sbjct: 809 HEYKSIDTIDSDDPQEIANYPAEILNTFDVSGLPTHILKLKVGAIIILLKNINSRQGLCNGTRLIIRSLTQHLIVAEIASGK 890
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: UPI001EE04635 (ATP-dependent DNA helicase PIF1-like n=2 Tax=Daphnia TaxID=6668 RepID=UPI001EE04635) HSP 1 Score: 62.0 bits (149), Expect = 3.310e-9 Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 1 Query: 1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGKRT--IALIPRI 273 H S++T +DDP + + V+ S D G+P + KVGAV+++++N++ GL NG R IIR + I E+ GK I IPR+ Sbjct: 389 HEYRSIDTIDSDDPEEISNYPTEVLNSFDVSGIPTHLLKMKVGAVIILLKNIDSRQGLCNGTRLIIRALRENLIVAEIAAGKNKGHIVYIPRM 481
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: UPI001EDF5CF5 (uncharacterized protein LOC124203505 n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDF5CF5) HSP 1 Score: 57.8 bits (138), Expect = 5.240e-8 Identity = 28/82 (34.15%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 1 HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGK 246 H S++T +DDP + + V+ S D +P + KVGAV+++++N++ GL NG R IIR + I E++ GK Sbjct: 132 HEYRSIDTIDSDDPEEISNYPTKVLNSFDVSEIPTHLLKMKVGAVIILLKNIDSRQGLCNGTRLIIRVLRENLIVAEIVAGK 213
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 7.780e-8 Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 Query: 82 IDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGK 246 I+APG P K GA++ IRN++FD GLVNG+R +IR I+R+ I VE+L + Sbjct: 610 INAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKRGVIRGISRRVIDVEVLSDE 664
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: A0A2G3AQN0_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQN0_CAPCH) HSP 1 Score: 57.0 bits (136), Expect = 1.940e-7 Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = 1 Query: 13 SVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDG--KRTIALIPRI 273 S+++ +DDP + + + SI G+P K+GA+V++IRN+N GLVNG R IIR + + + +E++ G + I +PRI Sbjct: 552 SIDSIISDDPTEAINVPLEFLNSITPSGLPPHKLNLKIGAIVMLIRNMNLGGGLVNGVRFIIRGMKQNSLKLEIITGVGQGNIVFLPRI 640
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: UPI001EDEBA4E (uncharacterized protein LOC124196051 n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDEBA4E) HSP 1 Score: 57.0 bits (136), Expect = 2.000e-7 Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 1 Query: 4 VMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDGK 246 V S++T ++DP + V+ + D G+P KVGAVV++++N++ GL NG R I++N+T I E+ GK Sbjct: 1529 VYKSIDTIDSEDPGEIADYPAEVLNTFDVSGLPPHALHLKVGAVVILLKNIDTRQGLCNGTRLILKNLTDNLIVAEIASGK 1609
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: UPI001F99873E (Uncharacterized protein n=2 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F99873E) HSP 1 Score: 56.6 bits (135), Expect = 2.460e-7 Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1 Query: 73 MQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDG--KRTIALIPRI 273 + +++ G PR KVG+++++IRNV SGL+NG R ++ + R+ I +L G K T ALIPRI Sbjct: 190 LHAMNPQGYPRHKLELKVGSIIMLIRNVELQSGLLNGTRLVVTQLKRRTIKARILTGTHKNTEALIPRI 258
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Match: UPI001F8B5F15 (Uncharacterized protein n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F8B5F15) HSP 1 Score: 55.1 bits (131), Expect = 9.520e-7 Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1 Query: 73 MQSIDAPGVPRSTERYKVGAVVVIIRNVNFDSGLVNGQRAIIRNITRKCITVELLDG--KRTIALIPRI 273 + +++ G PR KVG+++++IRNV SGL+NG R ++ + R+ I +L G K T ALIPRI Sbjct: 1361 LHAMNPQGYPRHKLELKVGSIIMLIRNVEPQSGLLNGTRLVVTQLKRRTIKARILTGTHKNTEALIPRI 1429 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131732 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18058 ID=mRNA_18058|Name=jgi.p|Trimin1|131732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_215:177235..177507- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CATGTAATGCACAGCGTCAACACAGCGTCCACTGACGACCCCATGGACACback to top protein sequence of jgi.p|Trimin1|131732 >Trimin1|131732|gw1.215.7.1 ID=Trimin1|131732|gw1.215.7.1|Name=jgi.p|Trimin1|131732|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp HVMHSVNTASTDDPMDTNYIDETVMQSIDAPGVPRSTERYKVGAVVVIIRback to top mRNA from alignment at Contig_215:177235..177507- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18058 ID=mRNA_18058|Name=jgi.p|Trimin1|131732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_215:177235..177507- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_215:177235..177507- >mRNA_18058 ID=mRNA_18058|Name=jgi.p|Trimin1|131732|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_215:177235..177507- (Tribonema minus UTEX_B_3156 )back to top |