mRNA_18050 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A835Z4F5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F5_9STRA) HSP 1 Score: 196 bits (497), Expect = 1.460e-63 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 Query: 1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLAQ 282 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLAQ Sbjct: 1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLAQ 94
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A836CQN8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQN8_9STRA) HSP 1 Score: 166 bits (421), Expect = 1.340e-51 Identity = 78/94 (82.98%), Postives = 85/94 (90.43%), Query Frame = 1 Query: 1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLAQ 282 LRRGKWS EEEAYT RIIHYFNTGVLQLPEGTTLR +LA+KL+CDPMRITKKFTGS+CLGKRVYHSCERTPA+ EI SKEDL+ LE RFL+Q Sbjct: 17 LRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQ 110
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: D7FME2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME2_ECTSI) HSP 1 Score: 145 bits (365), Expect = 4.570e-43 Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 1 Query: 4 RRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLA 279 R+GKW+SEEEA T RIIHYF+ GVLQLP+GTTLRAYLA+KL CDPMRITKKFTG++CLGKRVYHSCERT A+ + + E+L++LEARF A Sbjct: 9 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQA 100
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A6H5L1T7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T7_9PHAE) HSP 1 Score: 145 bits (365), Expect = 2.540e-38 Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 1 Query: 4 RRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLA 279 R+GKW+SEEEA T RIIHYF+ GVLQLP+GTTLRAYLA+KL CDPMRITKKFTG++CLGKRVYHSCERT A+ + + E+L++LEARF A Sbjct: 9 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQA 100
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A7S1UUW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUW2_9STRA) HSP 1 Score: 140 bits (352), Expect = 2.950e-37 Identity = 62/91 (68.13%), Postives = 77/91 (84.62%), Query Frame = 1 Query: 1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARF 273 LR+GKW+ EEE YT RIIH+F+TGVL LPEGTTLR+YLA+KL CDPMRITKKF G+SCLGKRVYH C+R+P + +I +K +L++LE RF Sbjct: 199 LRKGKWTVEEEEYTSRIIHHFSTGVLTLPEGTTLRSYLAEKLNCDPMRITKKFAGASCLGKRVYHLCDRSPGTAADIEMAKAELARLEQRF 289
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A6V1Q146_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q146_HETAK) HSP 1 Score: 134 bits (338), Expect = 1.370e-36 Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 1 Query: 1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARF 273 LR+GKW+ EEE +T +IIHYFNTG+LQLPEGTTLR+YLA+KL CDPMRITKKFTGS CLGKRVYH + A+ ++ + ++LS LE RF Sbjct: 97 LRKGKWTVEEEEFTSKIIHYFNTGILQLPEGTTLRSYLAEKLNCDPMRITKKFTGSQCLGKRVYHQGDVVQATHAQVVQALDELSHLERRF 187
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A7S1XJQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJQ1_9STRA) HSP 1 Score: 128 bits (322), Expect = 5.060e-34 Identity = 57/93 (61.29%), Postives = 75/93 (80.65%), Query Frame = 1 Query: 1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLA 279 LR+GKW++EEEAYTER+IH FN G+LQ+ GTTLR+YL++KL CDPMRITKK+ GSSC+GKR++ CERTP + + S ++L+ LEA F A Sbjct: 26 LRKGKWTAEEEAYTERVIHDFNEGLLQVAAGTTLRSYLSEKLNCDPMRITKKYAGSSCIGKRIFAPCERTPENIERGRQSAKELADLEAAFRA 118
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A7S1BZD1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZD1_9STRA) HSP 1 Score: 132 bits (331), Expect = 8.810e-34 Identity = 58/93 (62.37%), Postives = 77/93 (82.80%), Query Frame = 1 Query: 1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLA 279 LR+GKW++EEE +T RIIHYF+TG+L LPEGTTLR+YL++ L CDPMRITKKF G+SCLGKRVY C+R+ A+ ++ +K++L+ LE RF A Sbjct: 215 LRKGKWTAEEEEFTSRIIHYFSTGLLTLPEGTTLRSYLSETLSCDPMRITKKFAGASCLGKRVYRLCDRSKATANDNEMAKKELAHLEQRFRA 307
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: W7TJQ0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJQ0_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.050e-32 Identity = 59/96 (61.46%), Postives = 74/96 (77.08%), Query Frame = 1 Query: 1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYH-----SCERTPASPDEITASKEDLSQLEARF 273 LR+GKW+SEEE +T+R+I YFNTG+L LP GTTLRAYLA+KL+CDPMRITKKFTG++CLG+RVY S R SP + ++K L +LEAR Sbjct: 9 LRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARM 104
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A7S1ZRG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRG3_9STRA) HSP 1 Score: 126 bits (316), Expect = 2.980e-32 Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 1 Query: 1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARF 273 LR+GKW+ EEE YT +IIHYF+ G+L LPEGTTLR++LA KL CDPMRITKK+ G++CLGKR YH CER + +I + +L QLE RF Sbjct: 365 LRKGKWTLEEEEYTSKIIHYFSRGLLTLPEGTTLRSFLADKLNCDPMRITKKYAGAACLGKRAYHLCERPQVTIADIERANAELRQLEHRF 455 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18050 ID=mRNA_18050|Name=jgi.p|Trimin1|133848|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_215:115555..115836+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTTAGAAGAGGCAAGTGGTCATCCGAGGAGGAGGCGTACACGGAGAGGATback to top protein sequence of jgi.p|Trimin1|133848 >Trimin1|133848|gw1.215.11.1 ID=Trimin1|133848|gw1.215.11.1|Name=jgi.p|Trimin1|133848|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITback to top mRNA from alignment at Contig_215:115555..115836+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18050 ID=mRNA_18050|Name=jgi.p|Trimin1|133848|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_215:115555..115836+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_215:115555..115836+ >mRNA_18050 ID=mRNA_18050|Name=jgi.p|Trimin1|133848|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=282bp|location=Sequence derived from alignment at Contig_215:115555..115836+ (Tribonema minus UTEX_B_3156 )back to top |