mRNA_18050 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133848
Unique NamemRNA_18050
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A835Z4F5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F5_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.460e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
Query:    1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLAQ 282
            LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLAQ
Sbjct:    1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLAQ 94          
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A836CQN8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQN8_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.340e-51
Identity = 78/94 (82.98%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLAQ 282
            LRRGKWS EEEAYT RIIHYFNTGVLQLPEGTTLR +LA+KL+CDPMRITKKFTGS+CLGKRVYHSCERTPA+  EI  SKEDL+ LE RFL+Q
Sbjct:   17 LRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQ 110          
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: D7FME2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME2_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 4.570e-43
Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 1
Query:    4 RRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLA 279
            R+GKW+SEEEA T RIIHYF+ GVLQLP+GTTLRAYLA+KL CDPMRITKKFTG++CLGKRVYHSCERT A+ +    + E+L++LEARF A
Sbjct:    9 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQA 100          
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A6H5L1T7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T7_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.540e-38
Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 1
Query:    4 RRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLA 279
            R+GKW+SEEEA T RIIHYF+ GVLQLP+GTTLRAYLA+KL CDPMRITKKFTG++CLGKRVYHSCERT A+ +    + E+L++LEARF A
Sbjct:    9 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQA 100          
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A7S1UUW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUW2_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.950e-37
Identity = 62/91 (68.13%), Postives = 77/91 (84.62%), Query Frame = 1
Query:    1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARF 273
            LR+GKW+ EEE YT RIIH+F+TGVL LPEGTTLR+YLA+KL CDPMRITKKF G+SCLGKRVYH C+R+P +  +I  +K +L++LE RF
Sbjct:  199 LRKGKWTVEEEEYTSRIIHHFSTGVLTLPEGTTLRSYLAEKLNCDPMRITKKFAGASCLGKRVYHLCDRSPGTAADIEMAKAELARLEQRF 289          
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A6V1Q146_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q146_HETAK)

HSP 1 Score: 134 bits (338), Expect = 1.370e-36
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 1
Query:    1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARF 273
            LR+GKW+ EEE +T +IIHYFNTG+LQLPEGTTLR+YLA+KL CDPMRITKKFTGS CLGKRVYH  +   A+  ++  + ++LS LE RF
Sbjct:   97 LRKGKWTVEEEEFTSKIIHYFNTGILQLPEGTTLRSYLAEKLNCDPMRITKKFTGSQCLGKRVYHQGDVVQATHAQVVQALDELSHLERRF 187          
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A7S1XJQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJQ1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.060e-34
Identity = 57/93 (61.29%), Postives = 75/93 (80.65%), Query Frame = 1
Query:    1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLA 279
            LR+GKW++EEEAYTER+IH FN G+LQ+  GTTLR+YL++KL CDPMRITKK+ GSSC+GKR++  CERTP + +    S ++L+ LEA F A
Sbjct:   26 LRKGKWTAEEEAYTERVIHDFNEGLLQVAAGTTLRSYLSEKLNCDPMRITKKYAGSSCIGKRIFAPCERTPENIERGRQSAKELADLEAAFRA 118          
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A7S1BZD1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZD1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.810e-34
Identity = 58/93 (62.37%), Postives = 77/93 (82.80%), Query Frame = 1
Query:    1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLA 279
            LR+GKW++EEE +T RIIHYF+TG+L LPEGTTLR+YL++ L CDPMRITKKF G+SCLGKRVY  C+R+ A+ ++   +K++L+ LE RF A
Sbjct:  215 LRKGKWTAEEEEFTSRIIHYFSTGLLTLPEGTTLRSYLSETLSCDPMRITKKFAGASCLGKRVYRLCDRSKATANDNEMAKKELAHLEQRFRA 307          
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: W7TJQ0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJQ0_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.050e-32
Identity = 59/96 (61.46%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYH-----SCERTPASPDEITASKEDLSQLEARF 273
            LR+GKW+SEEE +T+R+I YFNTG+L LP GTTLRAYLA+KL+CDPMRITKKFTG++CLG+RVY      S  R   SP  + ++K  L +LEAR 
Sbjct:    9 LRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARM 104          
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Match: A0A7S1ZRG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRG3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.980e-32
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARF 273
            LR+GKW+ EEE YT +IIHYF+ G+L LPEGTTLR++LA KL CDPMRITKK+ G++CLGKR YH CER   +  +I  +  +L QLE RF
Sbjct:  365 LRKGKWTLEEEEYTSKIIHYFSRGLLTLPEGTTLRSFLADKLNCDPMRITKKYAGAACLGKRAYHLCERPQVTIADIERANAELRQLEHRF 455          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133848 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4F5_9STRA1.460e-63100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CQN8_9STRA1.340e-5182.98Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FME2_ECTSI4.570e-4372.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1T7_9PHAE2.540e-3872.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1UUW2_9STRA2.950e-3768.13Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A6V1Q146_HETAK1.370e-3665.93Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1XJQ1_9STRA5.060e-3461.29Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1BZD1_9STRA8.810e-3462.37Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
W7TJQ0_9STRA1.050e-3261.46Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1ZRG3_9STRA2.980e-3261.54Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_215contigContig_215:115555..115836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133848|gw1.215.11.1
Max annot lvl2759|Eukaryota
EggNOG OGs2DZRM@1|root,2S78E@2759|Eukaryota
Evalue7.5e-44
Seed ortholog2880.D7FME2
Hectar predicted targeting categoryother localisation
TranscriptId134170
TrackFilteredModels1
ProteinId133848
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133848gene_18050Tribonema minus UTEX_B_3156 geneContig_215 115555..115836 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18050_1exon_18050_1Tribonema minus UTEX_B_3156 exonContig_215 115555..115836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18050CDS_18050Tribonema minus UTEX_B_3156 CDSContig_215 115555..115836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133848Trimin1|133848|gw1.215.11.1Tribonema minus UTEX_B_3156 polypeptideContig_215 115555..115836 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18050 ID=mRNA_18050|Name=jgi.p|Trimin1|133848|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_215:115555..115836+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTAGAAGAGGCAAGTGGTCATCCGAGGAGGAGGCGTACACGGAGAGGAT
CATCCATTACTTTAACACAGGTGTGCTTCAGCTGCCGGAGGGCACCACCC
TGAGAGCTTACCTCGCTAAGAAGCTCCAGTGTGACCCGATGCGCATCACC
AAGAAGTTCACGGGGTCGTCTTGCCTCGGAAAACGAGTTTATCACTCCTG
CGAAAGGACGCCGGCATCACCCGACGAGATCACCGCCTCGAAAGAGGACC
TCTCTCAGCTGGAGGCCCGCTTCCTGGCACAA
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protein sequence of jgi.p|Trimin1|133848

>Trimin1|133848|gw1.215.11.1 ID=Trimin1|133848|gw1.215.11.1|Name=jgi.p|Trimin1|133848|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp
LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRIT
KKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLAQ
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mRNA from alignment at Contig_215:115555..115836+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18050 ID=mRNA_18050|Name=jgi.p|Trimin1|133848|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_215:115555..115836+ (Tribonema minus UTEX_B_3156 )
CTTAGAAGAGGCAAGTGGTCATCCGAGGAGGAGGCGTACACGGAGAGGAT CATCCATTACTTTAACACAGGTGTGCTTCAGCTGCCGGAGGGCACCACCC TGAGAGCTTACCTCGCTAAGAAGCTCCAGTGTGACCCGATGCGCATCACC AAGAAGTTCACGGGGTCGTCTTGCCTCGGAAAACGAGTTTATCACTCCTG CGAAAGGACGCCGGCATCACCCGACGAGATCACCGCCTCGAAAGAGGACC TCTCTCAGCTGGAGGCCCGCTTCCTGGCACAA
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Coding sequence (CDS) from alignment at Contig_215:115555..115836+

>mRNA_18050 ID=mRNA_18050|Name=jgi.p|Trimin1|133848|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=282bp|location=Sequence derived from alignment at Contig_215:115555..115836+ (Tribonema minus UTEX_B_3156 )
CTTAGAAGAGGCAAGTGGTCATCCGAGGAGGAGGCGTACACGGAGAGGAT
CATCCATTACTTTAACACAGGTGTGCTTCAGCTGCCGGAGGGCACCACCC
TGAGAGCTTACCTCGCTAAGAAGCTCCAGTGTGACCCGATGCGCATCACC
AAGAAGTTCACGGGGTCGTCTTGCCTCGGAAAACGAGTTTATCACTCCTG
CGAAAGGACGCCGGCATCACCCGACGAGATCACCGCCTCGAAAGAGGACC
TCTCTCAGCTGGAGGCCCGCTTCCTGGCACAA
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