mRNA_17970 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181295
Unique NamemRNA_17970
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA)

HSP 1 Score: 828 bits (2139), Expect = 4.450e-302
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 1 
Query:    1 MLRVNLLGRYVVKSTGSGAPTRVALSPPTRTAWAFFVRRHTFSGDARNPGAAAREPLHRHPHQVTVLQRASHEHGIASHSTTRQQHITRGGKTSPSSSSARSIHALGRRKKWNDALQIFRSIEEPTALEVRALLGTMAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELPLVALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISFNRCVKLCMAVHLTAYGPIAVQEQRSHFIC 1344
            MLRVNLLGRYVVKSTGSGAPTRVALSPPTRTAWAFFVRRHTFSGDARNPGAAAREPLHRHPHQVTVLQRASHEHGIASHSTTRQQHITRGGKTSPSSSSARSIHALGRRKKWNDALQIFRSIEEPTALEVRALLGTMAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELPLVALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISFNRCVKLCMAVHLTAYGPIAVQEQRSHFIC
Sbjct:    1 MLRVNLLGRYVVKSTGSGAPTRVALSPPTRTAWAFFVRRHTFSGDARNPGAAAREPLHRHPHQVTVLQRASHEHGIASHSTTRQQHITRGGKTSPSSSSARSIHALGRRKKWNDALQIFRSIEEPTALEVRALLGTMAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELPLVALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISFNRCVKLCMAVHLTAYGPIAVQEQRSHFIC 448
[Close]
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA)

HSP 1 Score: 432 bits (1111), Expect = 8.770e-145
Identity = 249/427 (58.31%), Postives = 284/427 (66.51%), Query Frame = 1 
Query:    1 MLRVNLLGRYVVKSTGSGAPTRVALSPPTRTAWAFFVRRHTFSGDARNPGAAAREPLHRHPHQVTVLQRASHEHGIASHSTTRQQHITRGGKTSPSSSSARSIHALGRRKKWNDALQIFRSIEEPTALEVRALLGTMAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELPLVALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISFNRCVKLCM 1281
            MLR +LLGRYVV S GSG PT+VAL   T T WAF   +++FSGDAR+PGAA RE  + H H ++VLQRAS EHGI S+  TRQQH +RGGK  PS++ A  IH LGR+KKWNDALQIF+SIEEPTALE RALL TMAYNHQP+HAM ALRQL+ +GAV  HDY+L IHA+AKELPL ALELLH+MEREGFGWT RA  TVLQA GK GRL+AAL LID MEQRN +P+D                                      G   D+R +N                                     L+AIG+AGQV EMMAWY EML  GG+ PD V+MTTLLDNAGKAGE+ IAEGIW E RDRQLAP+ + YNALI CYATARQPDKAE V+AEM QSAAVKPDAI+   CV L M
Sbjct:    1 MLRAHLLGRYVVNSIGSGVPTQVALRS-TLTTWAFV--KYSFSGDARDPGAAGRESPYWHRHHLSVLQRASLEHGIGSNFATRQQHTSRGGKP-PSTTPACRIHTLGRQKKWNDALQIFKSIEEPTALEARALLATMAYNHQPRHAMFALRQLRNTGAVASHDYQLIIHAYAKELPLEALELLHQMEREGFGWTHRACSTVLQAFGKAGRLSAALQLIDVMEQRNCNPSD--------------------------------------GIKLDVRSWNVL-----------------------------------LNAIGRAGQVTEMMAWYREMLKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAIALTSCVPLNM 350
[Close]
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Match: A0A835YWM4_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM4_9STRA)

HSP 1 Score: 308 bits (790), Expect = 4.770e-97
Identity = 171/296 (57.77%), Postives = 196/296 (66.22%), Query Frame = 1 
Query:  409 MAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELPLVALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSG----MRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGK-----AGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISFNRCV 1269
            MAYNHQPQHAM ALRQLQGSGAV FHDY+LAIHA+AKELP  ALELLH+ EREG  WT RA  T LQA GK GRLNAAL LI EMEQR  SP  +DYL L  ACARG +     +RAGDRGGSEQ LE L+RMQDKGPVPDIRHY+AAMKVC+T+G                               G    V  ++      + + G+ PD+     LL+  G+     AGE+ IAEGIWSE  + QLAP+ +TYNALI CY TA+QPDKAE VLAEM+QSAAVKPDAI F   +
Sbjct:    1 MAYNHQPQHAMTALRQLQGSGAVAFHDYQLAIHAYAKELPFEALELLHETEREGLAWTHRACSTTLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLTGACARGNTRGNNVIRAGDRGGSEQVLEILRRMQDKGPVPDIRHYSAAMKVCMTEGNSAKAVNIFRSMRDQHVMR------------GVLQWVMSVLIDAPFCIVLQGIKPDVRSWNVLLNAIGRTGQVAAGELGIAEGIWSEMLEHQLAPDVKTYNALIMCYTTAKQPDKAEEVLAEMIQSAAVKPDAIMFTSAI 284
[Close]
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Match: A0A835Z801_9STRA (Smr domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z801_9STRA)

HSP 1 Score: 286 bits (732), Expect = 4.380e-88
Identity = 183/325 (56.31%), Postives = 199/325 (61.23%), Query Frame = 1 
Query:  265 RGGKTSPSSSSARSIHALGRRKKWNDALQIFRSIEEPTALEVRALLGTMAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELPLVALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVK 1239
            RGGK SP  SSA  IH+LGRRKKWNDALQ+F SIEEPTALEVRALL T+AYN QP+HAM ALRQL+  GAVTF+DYELAIH HAKE P+ ALELLH+MEREGFGWT RA  TVLQA GKDGRLNAAL L DEM+QRN +P   DYL+LI+ CA  K   R                              AAMKVCVT+           XXXXXXXXXXXXXXXXX                                               IAEGIW E  DRQLAPN  TYNALINCYA A+Q DKAE V+AEM+QSAAVK
Sbjct:    2 RGGKPSPPGSSANRIHSLGRRKKWNDALQVFESIEEPTALEVRALLATVAYNDQPRHAMTALRQLRNIGAVTFYDYELAIHVHAKEFPIQALELLHEMEREGFGWTQRACSTVLQAFGKDGRLNAALQLTDEMQQRNINPNSTDYLILIMGCACSKDVRRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAMKVCVTERDMANAVSIFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXNIAEGIWREMHDRQLAPNETTYNALINCYAMAKQADKAENVVAEMIQSAAVK 325
[Close]
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Match: A0A836CK12_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK12_9STRA)

HSP 1 Score: 267 bits (682), Expect = 2.320e-84
Identity = 138/219 (63.01%), Postives = 161/219 (73.52%), Query Frame = 1 
Query:  610 ALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXX--LDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISFN 1260
            A GK GRL+AAL LIDEM+QR  SP D+DYL+LIVAC  GK+ MRAGDRGGS+QALE LQRMQD GPVPDIRHY+AAMKVC T+G                             LDAIG+AGQVAEMMAWY EML  GG+ P+ VI+ ++L +AG AGE+ IAEGIW E RDRQL PN+ +Y+A INCYATA+QPDKAEGVL EMVQSA +KP+AI+F 
Sbjct:    1 AFGKAGRLSAALQLIDEMKQRGISPNDVDYLMLIVACGHGKNVMRAGDRGGSKQALELLQRMQDTGPVPDIRHYDAAMKVCATEGDLAKAINIFESARDKAMGMKPNERSWGALLDAIGRAGQVAEMMAWYAEMLTSGGLQPNNVILNSMLAHAGTAGELGIAEGIWREMRDRQLEPNSYSYSAFINCYATAKQPDKAEGVLTEMVQSATIKPNAIAFT 219
[Close]
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA)

HSP 1 Score: 283 bits (725), Expect = 3.790e-84
Identity = 159/284 (55.99%), Postives = 194/284 (68.31%), Query Frame = 1 
Query:   22 GRYVVKSTGSGAP-TRVALSPPTRTAWAFFVRRHTFSGDARNPGAAAREPLHRHPHQVTVLQRASHEHGIASHSTTRQQHITRGGKTSPSSSSARSIHALGRRKKWNDALQIFRSIEEPTALEVRALLGTMAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELPLVALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDL--DYLVLIVACARGK---SGMRAGD-RGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVC 852
            GRY+ +  GSGAP TR  L       WAF       S +AR+PGAA   P + H  Q+ +LQRASH+HGIAS+ TTR QH +RGGK+ PS+S A SI ALG++K+W DA  IF +I +PTALE RALL TMAYNHQP+HAM ALR+LQGSGA+  HDYELAI AH K LP  A+ELL +M+REGF WT RA  TVLQA GK GRLNAAL LI EM+    SP  L  D+ +LI  C R +      R GD RGGS+ A+  LQ M+D    PD+ ++NAA++VC
Sbjct:    9 GRYLARCLGSGAPPTRGVLQQIQAATWAFAKH---LSSNARDPGAATHGPPYWHRQQLNLLQRASHQHGIASNFTTRLQHSSRGGKSPPSASPADSIRALGKQKRWQDAFNIFNAISKPTALEARALLATMAYNHQPRHAMTALRRLQGSGAMISHDYELAIQAHEKGLPFEAMELLREMKREGFRWTHRACSTVLQASGKAGRLNAALQLIKEMQGVGMSPNSLRVDFQILICNCVRDERVDDETRPGDSRGGSKMAMTLLQLMRDARLAPDVLNFNAALRVC 289
[Close]
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.430e-80
Identity = 144/236 (61.02%), Postives = 154/236 (65.25%), Query Frame = 1 
Query:  556 MEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGK-SGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISFN 1260
            MEREG  WT RA  TVLQA GK GRLNAAL LI EMEQR  SP  +DYL LI ACARGK +G RAGDRGGSEQALE LQRMQDKGPVPDIRHY AAMKVCVT+G                           LDAIGKAGQVAEMMAWYGEMLA G                    E  I E IW +  DRQL P+ ++YN  I+CYATA QPD+AEGVLAEM QSAAVKP+A  FN
Sbjct:    1 MEREGLAWTHRACSTVLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLIGACARGKKNGTRAGDRGGSEQALELLQRMQDKGPVPDIRHYTAAMKVCVTEGDSAKAVNIFRSMRDQGIKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFN 236
[Close]
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA)

HSP 1 Score: 257 bits (656), Expect = 1.100e-77
Identity = 140/237 (59.07%), Postives = 159/237 (67.09%), Query Frame = 1 
Query:  556 MEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGD-RGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISFNR 1263
            ME++GF WT  A G VL A GK GRLN A+ LID M     SP    YL LI  C R  +   AGD RGGS++ALE LQ M+D GPVP+IRH+ AA+ VCV +                            L AIG+AGQ+AEMMA Y EM A GGV P+LVIMTTLLDNAGKAGEV IAEGIWSE RDRQLAP+ +TYNALI CYATA+QPDK EGVLAE ++SAAVKPDAI F R
Sbjct:    1 MEQDGFRWTQVACGAVLVACGKAGRLNDAVQLIDNMRNHRVSPDGRTYLTLIQQCVRNSASTHAGDSRGGSKRALELLQLMKDAGPVPNIRHFTAAIMVCVAERNGISAITIFRMMQHEGIRPDLQSWGALLHAIGRAGQLAEMMACYREMCATGGVQPNLVIMTTLLDNAGKAGEVSIAEGIWSEMRDRQLAPDVKTYNALITCYATAKQPDKVEGVLAERIRSAAVKPDAIMFTR 237
[Close]
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Match: A0A835YW77_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW77_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.170e-61
Identity = 116/209 (55.50%), Postives = 134/209 (64.11%), Query Frame = 1 
Query:  628 RLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAW---YGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPD 1245
            RLNAAL LIDEM+QRN SP+D DYL+LIVAC RGK   R GDRGGSEQALE LQRMQDKGPVPD+RHY+AA+ VCVT+G                           LDA G+AG   + M W   Y    A      + +      ++   AGE+ +AEGIW E RDRQL PN  +YNA INCYATA+QPDKAEGVL EMVQSA +KPD
Sbjct:   13 RLNAALQLIDEMQQRNISPSDADYLILIVACDRGKRRTRGGDRGGSEQALELLQRMQDKGPVPDLRHYSAAITVCVTEGDLANAVNTFQSMRDKGIKPNDWSWAALLDAFGRAGGRNDGMVWGDGYNRRTA------NCLHHDHSAESCWAAGELSVAEGIWREMRDRQLEPNAYSYNASINCYATAKQPDKAEGVLTEMVQSATIKPD 215
[Close]
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Match: A0A835ZB42_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB42_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.630e-49
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:  535 ALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKG 864
            ALEL H+MEREGFGWT RA  TVL A GK GRLNAAL LIDEME+R FSP D+DYL LI AC RGK+ +RAGDRGGS+QALEFLQRMQDKGPVPDIRHY AAMKVCVT+G
Sbjct:    3 ALEL-HEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEG 111
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181295 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1B2_9STRA4.450e-302100.00PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEZ1_9STRA8.770e-14558.31PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YWM4_9STRA4.770e-9757.77Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z801_9STRA4.380e-8856.31Smr domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A836CK12_9STRA2.320e-8463.01PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A836CK07_9STRA3.790e-8455.99PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z5Z3_9STRA1.430e-8061.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEM5_9STRA1.100e-7759.07PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YW77_9STRA2.170e-6155.50PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835ZB42_9STRA1.630e-4980.00PPR_long domain-containing protein n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_249contigContig_249:111536..113490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181295|e_gw1.249.5.1
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
DescriptionPentatricopeptide repeat-containing protein At3g09650
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37R8Y@33090|Viridiplantae,3G8FN@35493|Streptophyta
Evalue3.44e-08
Seed ortholog161934.XP_010667236.1
Hectar predicted targeting categorymitochondrion
TranscriptId181617
TrackFilteredModels1
ProteinId181295
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181295gene_17970Tribonema minus UTEX_B_3156 geneContig_249 111536..113490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181295Trimin1|181295|e_gw1.249.5.1Tribonema minus UTEX_B_3156 polypeptideContig_249 111536..113490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17970_2exon_17970_2Tribonema minus UTEX_B_3156 exonContig_249 111536..111973 -
exon_17970_1exon_17970_1Tribonema minus UTEX_B_3156 exonContig_249 112582..113490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17970CDS_17970Tribonema minus UTEX_B_3156 CDSContig_249 112582..113490 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17970 ID=mRNA_17970|Name=jgi.p|Trimin1|181295|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1347bp|location=Sequence derived from alignment at Contig_249:111536..113490- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGCGTCAACCTCCTCGGCCGCTACGTAGTCAAGAGTACTGGCAG
TGGCGCACCAACTCGAGTTGCCCTCTCTCCTCCAACGCGAACAGCATGGG
CTTTTTTTGTGAGGAGGCACACCTTCAGCGGAGATGCTCGTAACCCTGGG
GCTGCAGCACGGGAGCCGTTGCACCGGCACCCTCATCAAGTGACTGTCTT
GCAGCGAGCCTCGCACGAGCACGGCATTGCCAGCCATTCTACAACGCGAC
AGCAGCACATTACACGTGGAGGCAAGACGTCTCCATCAAGCTCATCGGCC
CGTAGCATACACGCTCTAGGCAGAAGAAAGAAATGGAATGATGCTCTTCA
AATCTTCAGGAGCATTGAGGAGCCCACTGCTCTGGAAGTGAGGGCGCTTC
TCGGCACCATGGCCTACAATCATCAGCCCCAGCACGCCATGATTGCACTG
AGACAGTTGCAGGGTTCAGGAGCCGTAACCTTCCATGACTACGAGCTCGC
CATACATGCGCACGCAAAAGAGCTACCCCTTGTAGCTTTGGAGCTGCTGC
ACAAGATGGAGCGGGAGGGGTTTGGCTGGACTCTCCGTGCACGCGGCACT
GTGCTGCAAGCACTCGGCAAAGACGGGCGGCTCAATGCCGCACTGCACCT
GATTGACGAGATGGAACAGCGCAACTTCAGCCCCACTGATTTAGACTATC
TTGTTCTGATAGTGGCATGTGCCCGCGGCAAGAGTGGGATGCGTGCTGGC
GACAGGGGCGGCAGCGAGCAAGCCTTGGAGTTCCTGCAGCGTATGCAAGA
CAAGGGTCCTGTGCCTGACATTCGGCATTACAATGCTGCAATGAAGGTTT
GCGTGACGAAGGGAGACTCGGCCAAGGCCATCAGCATGTTTCAGAGTGCG
CGGGATCAGGGTATGCAACCGAATATACGGAGCTGGGGCGCGCTCTTGGA
TGCCATCGGTAAAGCGGGTCAGGTAGCCGAAATGATGGCATGGTATGGGG
AAATGCTCGCAATTGGCGGAGTACTGCCCGATCTTGTCATCATGACCACT
CTGCTGGATAATGCTGGGAAAGCGGGGGAGGTACGCATTGCTGAGGGCAT
CTGGAGTGAGACGCGCGATCGCCAGCTGGCCCCCAACAACAGGACCTACA
ATGCACTGATCAACTGCTATGCAACAGCGAGGCAGCCGGACAAGGCAGAG
GGAGTGCTTGCGGAGATGGTCCAGTCTGCTGCCGTCAAGCCGGATGCCAT
CAGCTTCAACAGGTGTGTAAAATTGTGCATGGCAGTACACCTTACAGCCT
ATGGCCCAATAGCAGTGCAAGAGCAACGATCTCATTTTATTTGTTAA
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protein sequence of jgi.p|Trimin1|181295

>Trimin1|181295|e_gw1.249.5.1 ID=Trimin1|181295|e_gw1.249.5.1|Name=jgi.p|Trimin1|181295|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=449bp
MLRVNLLGRYVVKSTGSGAPTRVALSPPTRTAWAFFVRRHTFSGDARNPG
AAAREPLHRHPHQVTVLQRASHEHGIASHSTTRQQHITRGGKTSPSSSSA
RSIHALGRRKKWNDALQIFRSIEEPTALEVRALLGTMAYNHQPQHAMIAL
RQLQGSGAVTFHDYELAIHAHAKELPLVALELLHKMEREGFGWTLRARGT
VLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAG
DRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGDSAKAISMFQSA
RDQGMQPNIRSWGALLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTT
LLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAE
GVLAEMVQSAAVKPDAISFNRCVKLCMAVHLTAYGPIAVQEQRSHFIC*
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mRNA from alignment at Contig_249:111536..113490-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17970 ID=mRNA_17970|Name=jgi.p|Trimin1|181295|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1955bp|location=Sequence derived from alignment at Contig_249:111536..113490- (Tribonema minus UTEX_B_3156 )
ATGCTTCGCGTCAACCTCCTCGGCCGCTACGTAGTCAAGAGTACTGGCAG
TGGCGCACCAACTCGAGTTGCCCTCTCTCCTCCAACGCGAACAGCATGGG
CTTTTTTTGTGAGGAGGCACACCTTCAGCGGAGATGCTCGTAACCCTGGG
GCTGCAGCACGGGAGCCGTTGCACCGGCACCCTCATCAAGTGACTGTCTT
GCAGCGAGCCTCGCACGAGCACGGCATTGCCAGCCATTCTACAACGCGAC
AGCAGCACATTACACGTGGAGGCAAGACGTCTCCATCAAGCTCATCGGCC
CGTAGCATACACGCTCTAGGCAGAAGAAAGAAATGGAATGATGCTCTTCA
AATCTTCAGGAGCATTGAGGAGCCCACTGCTCTGGAAGTGAGGGCGCTTC
TCGGCACCATGGCCTACAATCATCAGCCCCAGCACGCCATGATTGCACTG
AGACAGTTGCAGGGTTCAGGAGCCGTAACCTTCCATGACTACGAGCTCGC
CATACATGCGCACGCAAAAGAGCTACCCCTTGTAGCTTTGGAGCTGCTGC
ACAAGATGGAGCGGGAGGGGTTTGGCTGGACTCTCCGTGCACGCGGCACT
GTGCTGCAAGCACTCGGCAAAGACGGGCGGCTCAATGCCGCACTGCACCT
GATTGACGAGATGGAACAGCGCAACTTCAGCCCCACTGATTTAGACTATC
TTGTTCTGATAGTGGCATGTGCCCGCGGCAAGAGTGGGATGCGTGCTGGC
GACAGGGGCGGCAGCGAGCAAGCCTTGGAGTTCCTGCAGCGTATGCAAGA
CAAGGGTCCTGTGCCTGACATTCGGCATTACAATGCTGCAATGAAGGTTT
GCGTGACGAAGGGAGACTCGGCCAAGGCCATCAGCATGTTTCAGAGTGCG
CGGGATCAGGTAATGGTGATGGAATCAGATGTTTGTGTAGGTAGCAGCAT
TGCTCAAGGCCTTGAATTAACCCTGTGCGTCATTTCTACTGTCATCTTGC
TGCCATAATCGCATGGTTTGCAGTAATACAGAGCTTGTTCAGGTATTCAA
CATGTCGTTGAGCCAGGCTGCAGAATGTGATGGATAACATGTAGCTATAG
ATTTCTTGAGGTTTTTGGTAGGTTAGGGGTTAGAGTTAGCGTATCGTTCA
CCGCATTCCAGGCTTAAGGGGCTTTTTCTCGCATGTCTGCGACATTACTG
TGGACGGGATGTGTTGAAGAACTTTTCATGTTGACGCATATTGTGGCGGC
ACAAAGACTGTCGCATGCAATCGTCTTGTTGTCCAGTGACTTATGTGCAG
GGATGTTGAGCGCGCTTTGTATGTGTTGTAAAAAATCCTGTGTTGCACTT
AGTGCGGGCCTTAGGTACACACTTGGCCTTTACAGCCGATGTAGATTTTT
GCTACTTATGAAACAATATGTCAAGTGGCCATGCTGTGTTGTACACCCAG
CATTCAACGACATGCGTAGCTTCAATGAGCCTTGTGTGCTAAGATCGGTG
CGCACTTCTTGCTGCAGGGTATGCAACCGAATATACGGAGCTGGGGCGCG
CTCTTGGATGCCATCGGTAAAGCGGGTCAGGTAGCCGAAATGATGGCATG
GTATGGGGAAATGCTCGCAATTGGCGGAGTACTGCCCGATCTTGTCATCA
TGACCACTCTGCTGGATAATGCTGGGAAAGCGGGGGAGGTACGCATTGCT
GAGGGCATCTGGAGTGAGACGCGCGATCGCCAGCTGGCCCCCAACAACAG
GACCTACAATGCACTGATCAACTGCTATGCAACAGCGAGGCAGCCGGACA
AGGCAGAGGGAGTGCTTGCGGAGATGGTCCAGTCTGCTGCCGTCAAGCCG
GATGCCATCAGCTTCAACAGGTGTGTAAAATTGTGCATGGCAGTACACCT
TACAGCCTATGGCCCAATAGCAGTGCAAGAGCAACGATCTCATTTTATTT
GTTAA
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Coding sequence (CDS) from alignment at Contig_249:111536..113490-

>mRNA_17970 ID=mRNA_17970|Name=jgi.p|Trimin1|181295|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1347bp|location=Sequence derived from alignment at Contig_249:111536..113490- (Tribonema minus UTEX_B_3156 )
ATGCTTCGCGTCAACCTCCTCGGCCGCTACGTAGTCAAGAGTACTGGCAG
TGGCGCACCAACTCGAGTTGCCCTCTCTCCTCCAACGCGAACAGCATGGG
CTTTTTTTGTGAGGAGGCACACCTTCAGCGGAGATGCTCGTAACCCTGGG
GCTGCAGCACGGGAGCCGTTGCACCGGCACCCTCATCAAGTGACTGTCTT
GCAGCGAGCCTCGCACGAGCACGGCATTGCCAGCCATTCTACAACGCGAC
AGCAGCACATTACACGTGGAGGCAAGACGTCTCCATCAAGCTCATCGGCC
CGTAGCATACACGCTCTAGGCAGAAGAAAGAAATGGAATGATGCTCTTCA
AATCTTCAGGAGCATTGAGGAGCCCACTGCTCTGGAAGTGAGGGCGCTTC
TCGGCACCATGGCCTACAATCATCAGCCCCAGCACGCCATGATTGCACTG
AGACAGTTGCAGGGTTCAGGAGCCGTAACCTTCCATGACTACGAGCTCGC
CATACATGCGCACGCAAAAGAGCTACCCCTTGTAGCTTTGGAGCTGCTGC
ACAAGATGGAGCGGGAGGGGTTTGGCTGGACTCTCCGTGCACGCGGCACT
GTGCTGCAAGCACTCGGCAAAGACGGGCGGCTCAATGCCGCACTGCACCT
GATTGACGAGATGGAACAGCGCAACTTCAGCCCCACTGATTTAGACTATC
TTGTTCTGATAGTGGCATGTGCCCGCGGCAAGAGTGGGATGCGTGCTGGC
GACAGGGGCGGCAGCGAGCAAGCCTTGGAGTTCCTGCAGCGTATGCAAGA
CAAGGGTCCTGTGCCTGACATTCGGCATTACAATGCTGCAATGAAGGTTT
GCGTGACGAAGGGAGACTCGGCCAAGGCCATCAGCATGTTTCAGAGTGCG
CGGGATCAGGGTATGCAACCGAATATACGGAGCTGGGGCGCGCTCTTGGA
TGCCATCGGTAAAGCGGGTCAGGTAGCCGAAATGATGGCATGGTATGGGG
AAATGCTCGCAATTGGCGGAGTACTGCCCGATCTTGTCATCATGACCACT
CTGCTGGATAATGCTGGGAAAGCGGGGGAGGTACGCATTGCTGAGGGCAT
CTGGAGTGAGACGCGCGATCGCCAGCTGGCCCCCAACAACAGGACCTACA
ATGCACTGATCAACTGCTATGCAACAGCGAGGCAGCCGGACAAGGCAGAG
GGAGTGCTTGCGGAGATGGTCCAGTCTGCTGCCGTCAAGCCGGATGCCAT
CAGCTTCAACAGGTGTGTAAAATTGTGCATGGCAGTACACCTTACAGCCT
ATGGCCCAATAGCAGTGCAAGAGCAACGATCTCATTTTATTTGTTAA
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