mRNA_17869 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354436
Unique NamemRNA_17869
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354436 vs. uniprot
Match: A0A836CI55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI55_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.390e-29
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 2 
Query:    2 WLPLRPSSRPLCRWRRRRTRPRQEGLRAPLLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTRRVAAEWAEAVAAAAVACIVHATRVHSARHT 343
            WLPLRPSSRPLCRWRRRRTRPRQEGLRAPLLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTRRVAAEWAEAVAAAAVACIVHATRVHSARHT
Sbjct:    1 WLPLRPSSRPLCRWRRRRTRPRQEGLRAPLLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTRRVAAEWAEAVAAAAVACIVHATRVHSARHT 114
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354436 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CI55_9STRA6.390e-29100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_246contigContig_246:68945..69773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354436|estExt_Genemark1.C_Ctg_2460015
Hectar predicted targeting categorymitochondrion
TranscriptId354758
TrackFilteredModels1
ProteinId354436
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354436gene_17869Tribonema minus UTEX_B_3156 geneContig_246 68945..69773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354436Trimin1|354436|estExt_Genemark1.C_Ctg_2460015Tribonema minus UTEX_B_3156 polypeptideContig_246 68946..69767 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17869_1exon_17869_1Tribonema minus UTEX_B_3156 exonContig_246 68945..69054 +
exon_17869_2exon_17869_2Tribonema minus UTEX_B_3156 exonContig_246 69449..69533 +
exon_17869_3exon_17869_3Tribonema minus UTEX_B_3156 exonContig_246 69617..69773 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17869UTR5_17869Tribonema minus UTEX_B_3156 five_prime_UTRContig_246 68945..68945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17869CDS_17869Tribonema minus UTEX_B_3156 CDSContig_246 68946..69054 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17869UTR3_17869Tribonema minus UTEX_B_3156 three_prime_UTRContig_246 69768..69773 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17869 ID=mRNA_17869|Name=jgi.p|Trimin1|354436|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=352bp|location=Sequence derived from alignment at Contig_246:68945..69773+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCCCTGAGGCCTTCATCACGGCCCTTGTGTCGCTGGCGCCGCC
GGCGGACACGGCCGCGGCAGGAAGGGCTGCGCGCGCCGCTGCTGCCGCCG
CCGCCGCAGCGCGCTCGGCGCCGCGGCGGCAGTCGGCGCAGCCGCGCGTT
GAGGCCGCCGCAGCGCGCTGCTGCAGCGTCGCGACCGCTGCTGCGCGGCC
CACCTGCGGCAGCGGCGGCGGCGGCGGGGAAGGCGCGGCGGCGCTGCACG
CGACGCGTCGCCGCTGAGTGGGCAGAGGCAGTGGCCGCGGCCGCAGTGGC
GTGCATAGTGCACGCCACACGTGTGCATAGTGCACGCCACACCTAATAAT
AA
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protein sequence of jgi.p|Trimin1|354436

>Trimin1|354436|estExt_Genemark1.C_Ctg_2460015 ID=Trimin1|354436|estExt_Genemark1.C_Ctg_2460015|Name=jgi.p|Trimin1|354436|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp
WLPLRPSSRPLCRWRRRRTRPRQEGLRAPLLPPPPQRARRRGGSRRSRAL
RPPQRAAAASRPLLRGPPAAAAAAAGKARRRCTRRVAAEWAEAVAAAAVA
CIVHATRVHSARHT*
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mRNA from alignment at Contig_246:68945..69773+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17869 ID=mRNA_17869|Name=jgi.p|Trimin1|354436|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=829bp|location=Sequence derived from alignment at Contig_246:68945..69773+ (Tribonema minus UTEX_B_3156 )
ATGGTTGCCCCTGAGGCCTTCATCACGGCCCTTGTGTCGCTGGCGCCGCC
GGCGGACACGGCCGCGGCAGGAAGGGCTGCGCGCGCCGCTGCTGCCGCCG
CCGCCGCAGCGTGGGGCTCAGGCCACCGTCCCGAGCCCCAAGGGAAGGTT
CTACTGCGAGCTGCCTGGATTGTGGCCGCCATCTAGCCCTGGCGCTGCAG
TGCGCCGTGTGGCAGCGCTCCGCACTGAGCACTCCCTGCACGAGAGCGCG
GCGGTGGCAATGGCGGCGGCAGCGACAGCGGCGGCGGCAGCGGCAATGGC
GGCGGCTCATTCCCAGTTGCCAAAAATGCCGTGGCGTTATCGTCGCCACT
AGCGTTGCAGCAGTGTGTGCCAGCGCGCCTGTCCGTGTAGCCTCGACGCG
CGCGCACAGCGCTGCCTCCGCCGTGCGTCGCCGCCACGTAATGCGGCGCG
CACGTGTGCTGCCGCGTGCCGCCACGCCCCTGCAGGTGCATGCGCGAGCT
GCAGGCGCTCGGCGCCGCGGCGGCAGTCGGCGCAGCCGCGCGTTGAGGCC
GCCGCAGCGCGCTGCTGCAGCGTCGCGACCGCTGCTGCGGTAAGCTGCCG
GCGCCGCTGCCGCCGCGGCACGCGCGCTAGATCGATGCTTCGATGCGGCA
ACGCACGCTGCGTGCATGTGAGCGGCCCACCTGCGGCAGCGGCGGCGGCG
GCGGGGAAGGCGCGGCGGCGCTGCACGCGACGCGTCGCCGCTGAGTGGGC
AGAGGCAGTGGCCGCGGCCGCAGTGGCGTGCATAGTGCACGCCACACGTG
TGCATAGTGCACGCCACACCTAATAATAA
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Coding sequence (CDS) from alignment at Contig_246:68945..69773+

>mRNA_17869 ID=mRNA_17869|Name=jgi.p|Trimin1|354436|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_246:68945..69773+ (Tribonema minus UTEX_B_3156 )
TGGTTGCCCCTGAGGCCTTCATCACGGCCCTTGTGTCGCTGGCGCCGCCG
GCGGACACGGCCGCGGCAGGAAGGGCTGCGCGCGCCGCTGCTGCCGCCGC
CGCCGCAGCGCGCTCGGCGCCGCGGCGGCAGTCGGCGCAGCCGCGCGTTG
AGGCCGCCGCAGCGCGCTGCTGCAGCGTCGCGACCGCTGCTGCGCGGCCC
ACCTGCGGCAGCGGCGGCGGCGGCGGGGAAGGCGCGGCGGCGCTGCACGC
GACGCGTCGCCGCTGAGTGGGCAGAGGCAGTGGCCGCGGCCGCAGTGGCG
TGCATAGTGCACGCCACACGTGTGCATAGTGCACGCCACACCTAA
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