mRNA_17818 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180321
Unique NamemRNA_17818
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Match: A0A835Z4G6_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G6_9STRA)

HSP 1 Score: 416 bits (1068), Expect = 2.060e-147
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 
Query:    1 MRGEKYQDPSFPVLSHPADCLYINANKPNSGIDVPAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGHLESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGGQLLHYDAITSTALLCCHRDAPLY 579
            MRGEKYQDPSFPVLSHPADCLYINANKPNSGIDVPAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGHLESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGGQLLHYDAITSTALLCCHRDAPLY
Sbjct:    1 MRGEKYQDPSFPVLSHPADCLYINANKPNSGIDVPAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGHLESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGGQLLHYDAITSTALLCCHRDAPLY 193
[Close]
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Match: A0A835Z6R8_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R8_9STRA)

HSP 1 Score: 286 bits (731), Expect = 1.440e-95
Identity = 129/170 (75.88%), Postives = 145/170 (85.29%), Query Frame = 1 
Query:    1 MRGEKYQDPSFPVLSHPADCLYINANKPNSGIDVPAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGHLESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGG 510
            +RG KY DPSF VL++P  CL+INA+ PN  I +P +WLRPTDL S PQLF++GV AGDIQQG +GTCYLLGALASLSAH GHLESIFVAHDFEAGVVAVRFF+HNSWK+VIIDD+IGCN DG+I YSHCKD N+FWLPLIEKAW KL GCYE    GH HHALMD+TGG
Sbjct:   24 LRGTKYVDPSFSVLANPRGCLFINADNPNPEIPIPPKWLRPTDLSSDPQLFVDGVLAGDIQQGAVGTCYLLGALASLSAHTGHLESIFVAHDFEAGVVAVRFFNHNSWKYVIIDDIIGCNEDGSIAYSHCKDKNEFWLPLIEKAWAKLHGCYEYTHYGHTHHALMDMTGG 193
[Close]
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Match: A0A835ZBB9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB9_9STRA)

HSP 1 Score: 290 bits (742), Expect = 1.560e-95
Identity = 134/169 (79.29%), Postives = 143/169 (84.62%), Query Frame = 1 
Query:    4 RGEKYQDPSFPVLSHPADCLYINANKPNSGIDVPAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGHLESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGG 510
            RGEKY+DP FPVL+ P  CLYIN   PN+ I  PAQWLRPTDL S PQ+F+EGV+AGDIQQG LGTCYLLGALA LSAHKGHLESIFVAHDFEAGVV VRFFDHN WK++IIDDLIGCN DG ILYSHCK  N+FWLPLIEKAW KL GCYEQ   G EHHALMDLTGG
Sbjct:   60 RGEKYEDPDFPVLADPERCLYIN--NPNAEIHAPAQWLRPTDLSSDPQMFVEGVHAGDIQQGVLGTCYLLGALAGLSAHKGHLESIFVAHDFEAGVVGVRFFDHNCWKYIIIDDLIGCNEDGRILYSHCKAENEFWLPLIEKAWAKLHGCYEQTSGGWEHHALMDLTGG 226
[Close]
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Match: A0A835ZFZ2_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFZ2_9STRA)

HSP 1 Score: 275 bits (704), Expect = 4.290e-89
Identity = 127/171 (74.27%), Postives = 140/171 (81.87%), Query Frame = 1 
Query:    4 RGEKYQD---PSFPVLSHPADCLYINANKPNSGIDVPAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGHLESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTG 507
            RGEKY+D   P FPVL+ P  CL+IN  KPN+   VP QWLRPTDL S PQ+F+EGV+AGDIQQG +GTCYLLGALA LSAHK HLESIFVAHDFEAGVVAVRFFDHN WK++II+DLIG N DG ILYSHCKD N+ WLPLIEKAW KL GCYE    GH HHALMD+TG
Sbjct:   13 RGEKYEDLSDPDFPVLADPESCLFINVEKPNADFPVPDQWLRPTDLSSNPQMFVEGVHAGDIQQGAIGTCYLLGALAGLSAHKRHLESIFVAHDFEAGVVAVRFFDHNCWKYIIINDLIGGNEDGNILYSHCKDKNEVWLPLIEKAWAKLHGCYEYTHFGHTHHALMDMTG 183
[Close]
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Match: A0A836CIW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW9_9STRA)

HSP 1 Score: 209 bits (531), Expect = 4.710e-62
Identity = 89/168 (52.98%), Postives = 123/168 (73.21%), Query Frame = 1 
Query:    7 GEKYQDPSFPVLSHPADCLYINANKPNSGIDVPAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGHLESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGG 510
            G K+ D  FPV + PA CLY   +KP+     P+ W R +++   PQ+F++GV+AGDIQQG LG+CY LGALA+++AHK HLES+ +AHD + G+VAVRFF +N W+ VIIDD IG  +DG+ILY+ CKD ++FW+PL+EKA+ KL G +E    G  + A+MD+TGG
Sbjct:   88 GSKFTDVDFPVTTKPAKCLYTRRHKPSDEFPAPSMWKRSSEISERPQMFVDGVHAGDIQQGGLGSCYFLGALAAIAAHKEHLESLIIAHDLQVGIVAVRFFKNNKWQAVIIDDYIGLKSDGSILYASCKDQDEFWVPLLEKAYAKLHGSFESIDGGWTYQAIMDMTGG 255
[Close]
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Match: A0A835YKV9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV9_9STRA)

HSP 1 Score: 203 bits (517), Expect = 5.950e-59
Identity = 89/168 (52.98%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:    7 GEKYQDPSFPVLSHPADCLYINANKPNSGIDVPAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGHLESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGG 510
            G K+ D  FPV + P  CLY      N  I  P+ W R +++ + PQ+F++GV AGDIQQG LG+CY LGALA+++AHK HLES+ +AHDFEAG+VAVRFF +N W  VIIDD IG  +DG+ILY+ C D ++FW+PL+EKA+ KL G +E    G+ +  +MD+TGG
Sbjct:   81 GTKFTDAQFPVTTTPNKCLYTCRLMKNEEIPAPSMWKRASEISARPQMFVDGVAAGDIQQGALGSCYFLGALAAIAAHKAHLESLIIAHDFEAGIVAVRFFKNNLWHAVIIDDYIGLASDGSILYARCTDPDEFWVPLLEKAYAKLHGSFESINGGYNYQVIMDMTGG 248
[Close]
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Match: A0A835Z8S4_9STRA (Calpain catalytic domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S4_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.210e-56
Identity = 81/168 (48.21%), Postives = 119/168 (70.83%), Query Frame = 1 
Query:    7 GEKYQDPSFPVLSHPADCLYINANKPNSGIDVPAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGHLESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGG 510
            G K+ D  FPV + P  CLY   ++P+     P+ W R +++   PQ+F++GV+AGDI+QG LG+CY LGALA+++AHK HLES+ +AHDFE G+VA+RFF +N W+ +IIDD IG  +D  I ++ C D ++FW+PL+EKA+ KL G +E  + G  +  +MD+TGG
Sbjct:   84 GTKFTDADFPVTTKPTKCLYKFRHRPSEKFPAPSMWKRVSEISERPQMFVDGVHAGDIKQGYLGSCYFLGALAAIAAHKEHLESLIIAHDFEVGIVALRFFKNNKWQSLIIDDYIGLKSDNTIHFASCNDPDEFWVPLLEKAYAKLHGSFESIECGFGYQVIMDMTGG 251
[Close]
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Match: A0A7S2QNW0_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QNW0_9DINO)

HSP 1 Score: 142 bits (359), Expect = 4.010e-36
Identity = 66/171 (38.60%), Postives = 107/171 (62.57%), Query Frame = 1 
Query:    7 GEKYQDPSFPVLSHPADCLYINANKPNSGIDV--PAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGH-LESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGG 510
            GE++ DP + V  +P + LY++   P     V  PA + R +++ + P+LF  GV+AGDI+QG +GTC+LLGAL +++A+K   ++  F+ +D +AGV  VRF     W+HVI+DDL+  +  G ++Y+   D  + W+P++EKA+ KL  CYE    G  + A+  + GG
Sbjct:  142 GERFVDPGWDVTKNPYEVLYVDKQGPGHDCTVGAPAAYKRLSEVVANPRLFKGGVHAGDIKQGQIGTCFLLGALGAIAANKEEAIKKAFIKYDMQAGVYGVRFCVDGEWEHVIVDDLMPVDQYGRLMYARSADPEELWVPILEKAYCKLNTCYEMCDGGRPNQAIYHICGG 312
[Close]
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Match: A0A7S1RKC7_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RKC7_ALECA)

HSP 1 Score: 135 bits (339), Expect = 1.570e-33
Identity = 63/171 (36.84%), Postives = 101/171 (59.06%), Query Frame = 1 
Query:    7 GEKYQDPSFPVLSHPADCLYINANKPNSGIDV--PAQWLRPTDLCSAPQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGH-LESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGG 510
            G ++ DP++ + + P   LY++  KP     V  PA + R ++L   PQLF  G+ AGDI QG +GTC+LLGA+ ++++H  H ++ +F+ +D + GV  VRF     W + ++DD +  +  G +LY+  KD ++ W PL+EKA+ KL  CYE    G    A+ +  GG
Sbjct:   70 GTQFTDPAWDMTTAPEAVLYVDKEKPGWDCTVGEPAGYKRLSELIQEPQLFKGGIRAGDIIQGRIGTCFLLGAMGAVASHSPHAVKKMFIKYDMKVGVYGVRFCLDGEWTYTVVDDWMPVDGSGRLLYARSKDPDEVWCPLLEKAYCKLHTCYEMCDGGWSTEAIFNFFGG 240
[Close]
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Match: A0A7S0FWJ4_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FWJ4_9DINO)

HSP 1 Score: 134 bits (338), Expect = 4.400e-33
Identity = 70/194 (36.08%), Postives = 104/194 (53.61%), Query Frame = 1 
Query:    7 GEKYQDPSFPVLSHPADCLYINANKPNSGIDV--PAQWLRPTDLCSA-----------------------PQLFIEGVNAGDIQQGTLGTCYLLGALASLSAHKGH-LESIFVAHDFEAGVVAVRFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLGCYEQAQSGHEHHALMDLTGG 510
            G K+ DP + V S P + LY++  +P     V  PA+W R TD+  A                       P LF  G+ AGDI QG +GTC+LLGA+ ++++     ++ +F+ +D +AGV  +RF     W +VI+DD +  + DG ILY+H KDA + W+ L+EKA+ KL  CYE    G    A+  + GG
Sbjct:  263 GTKFTDPEWNVRSSPTEVLYVDKERPGWDCTVGKPARWKRLTDIAKASGTGSALNSLFGSFASGPKKKIKPALFKGGIKAGDIVQGNIGTCFLLGAMGAIASDSDEAIQRMFIRYDVDAGVYGLRFNVDGEWDYVIVDDYMPVDYDGNILYAHSKDAEEVWVALLEKAFCKLHTCYEMCDGGMSREAIACMLGG 456
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180321 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4G6_9STRA2.060e-147100.00Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835Z6R8_9STRA1.440e-9575.88Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835ZBB9_9STRA1.560e-9579.29Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835ZFZ2_9STRA4.290e-8974.27Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A836CIW9_9STRA4.710e-6252.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKV9_9STRA5.950e-5952.98Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835Z8S4_9STRA2.210e-5648.21Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A7S2QNW0_9DINO4.010e-3638.60Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S1RKC7_ALECA1.570e-3336.84Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S0FWJ4_9DINO4.400e-3336.08Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_214contigContig_214:59294..62240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180321|e_gw1.214.35.1
BRITEko00000,ko01000,ko01002
KEGG koko:K08574,ko:K08579,ko:K08585
Descriptioncalcium-dependent cysteine-type endopeptidase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0045@1|root,KOG0045@2759|Eukaryota
Evalue9.41e-33
Seed ortholog55529.EKX44326
Hectar predicted targeting categoryother localisation
TranscriptId180643
TrackFilteredModels1
ProteinId180321
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180321gene_17818Tribonema minus UTEX_B_3156 geneContig_214 59294..62240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180321Trimin1|180321|e_gw1.214.35.1Tribonema minus UTEX_B_3156 polypeptideContig_214 59294..62240 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17818_3exon_17818_3Tribonema minus UTEX_B_3156 exonContig_214 59294..59470 -
exon_17818_2exon_17818_2Tribonema minus UTEX_B_3156 exonContig_214 60093..60301 -
exon_17818_1exon_17818_1Tribonema minus UTEX_B_3156 exonContig_214 62045..62240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17818CDS_17818Tribonema minus UTEX_B_3156 CDSContig_214 62045..62240 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17818 ID=mRNA_17818|Name=jgi.p|Trimin1|180321|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_214:59294..62240- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGCGAGAAGTATCAAGATCCCTCTTTTCCAGTGCTGTCCCACCC
CGCGGACTGTCTTTACATCAACGCGAACAAGCCCAACTCGGGCATCGACG
TACCAGCGCAGTGGCTGCGCCCCACTGACCTTTGCTCAGCCCCGCAACTA
TTCATCGAGGGCGTGAACGCTGGGGACATTCAACAGGGCACCCTTGGAAC
ATGCTACCTGCTGGGGGCCCTGGCAAGTCTGTCAGCGCACAAGGGGCACC
TGGAGAGCATCTTTGTGGCACACGACTTTGAGGCCGGTGTGGTCGCCGTG
CGCTTCTTCGACCATAACTCCTGGAAGCACGTCATCATCGATGACCTCAT
CGGCTGCAACGCGGACGGCGCGATTTTGTACTCACACTGCAAGGATGCAA
ATGATTTCTGGCTGCCACTAATTGAGAAGGCGTGGGTCAAGCTTCTTGGC
TGCTACGAGCAAGCCCAAAGTGGCCATGAGCATCACGCACTCATGGACCT
GACAGGTGGGCAGTTATTGCATTATGATGCAATAACCTCAACAGCCTTGC
TCTGCTGCCATCGTGATGCCCCTCTCTACTAG
back to top

protein sequence of jgi.p|Trimin1|180321

>Trimin1|180321|e_gw1.214.35.1 ID=Trimin1|180321|e_gw1.214.35.1|Name=jgi.p|Trimin1|180321|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=194bp
MRGEKYQDPSFPVLSHPADCLYINANKPNSGIDVPAQWLRPTDLCSAPQL
FIEGVNAGDIQQGTLGTCYLLGALASLSAHKGHLESIFVAHDFEAGVVAV
RFFDHNSWKHVIIDDLIGCNADGAILYSHCKDANDFWLPLIEKAWVKLLG
CYEQAQSGHEHHALMDLTGGQLLHYDAITSTALLCCHRDAPLY*
back to top

mRNA from alignment at Contig_214:59294..62240-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17818 ID=mRNA_17818|Name=jgi.p|Trimin1|180321|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2947bp|location=Sequence derived from alignment at Contig_214:59294..62240- (Tribonema minus UTEX_B_3156 )
ATGCGCGGCGAGAAGTATCAAGATCCCTCTTTTCCAGTGCTGTCCCACCC
CGCGGACTGTCTTTACATCAACGCGAACAAGCCCAACTCGGGCATCGACG
TACCAGCGCAGTGGCTGCGCCCCACTGACCTTTGCTCAGCCCCGCAACTA
TTCATCGAGGGCGTGAACGCTGGGGACATTCAACAGGGCACCCTTGGTCA
GTCTGGTCATAACATATGGCACAACAGTGTTCTATCGTACACCTTGAGAG
ATGAAATGAACTTCAAGCTCAAATATCATGATGATTGCACACTGTGCAAC
CTCTGGAAAAGCCTGCCATCTTTTGCAGCGCAGCTCATACATAGTATTAC
ATCAAATCTGAGACTTTTGAAGCGATTCATGCCACAGACTGAGCCTCTGA
GACATGCACAATGGTTACAACTTTGATCCCAGCAACTAAGAAATGCGCCA
TGGTTGGAACTTTGATCACAGCATAATTCAACTTCACGAAGCCCAAAAAT
GGAGTAGATGTGTGATCAACATGTCGTTTTTCAAGGTATGCCGATGGCGT
GTGACACCAGATCTACACTGAGTCTCGTACAGCTCGCCATTGAGCTGGTC
TCTTGACCCATCATAACATATGAGCTTGAGATACCATTAAGACATTGACA
GTTTGAAGGCCCACGCATGCATTGAACCGTAGCTCAGTTGTCAACCCCTG
GATGATTTGCAGCTTCAAGTTTAATGGAACTGAGTCAGACTCCGGGGCAA
CGAGCTATAAGTTCAACTCGAGTTGACCATCTTACATATTTGTCAGTCAT
TGTGCCACAGTATGCGAACCATGATGGCTGCAGCCGCGGTCAAATTAGTA
GCGCTTGATGATGTATTAAACTTGTGTGGTGCAAGCATGCCTGCAATGAC
CGCTGAAATAATTGCAGCAGCTACAGCGTGCCGCAGTGCTCATTCTAGCA
GACGGGTATGCGTTTGGGTAAGATGCCACACGGTGCCATATGCACGGTGG
CATCATTGAGCTGAAATCTGCTCAGTGGCATGGCCCAACCAATGGTCTTG
TGTAGGTATCGGCGGCGCATTACTTGAAGAAGTTGACATAGTTTTAATAA
TTCGTGCTGCCTCTGCGCCAGTCTCACTCAAAGGCTGAGCTGTGTTGCAC
TGAGTGTGCCAGACTGCTGCAGCAGTGAGTGTGACAGTTCCTAACCTGAC
ACTGTGCCAGCATCCTGTTATGTAACACCTTCATGCATGGTCTACAAATT
GAAGCGGATGACGACTTCACTGCCGATGCACACATTCAGTACTATATCAA
TCAATCAGGCCGACACAGGATGTCATTCCGTGCCATAGCCTCAACATGTC
CGCACAGTGCTGACACATATCCTGTTGAATGAAGCATAGGTACACTGATG
TTAAATTGGCTGGGTGTGGTATTTGCAGTATACACTTGAGTATACACTTC
AACTATGCTGACAGGCTAACGCGCTCTAAAAATTCATTTACGGGCTGAGT
AGTAGAAGTATCCATACGTATAGAATGATGCTTGAAAAATCGAAATTATG
CTCAAATACTCGGGTTCAACTGCTGCAAAGCTGAATGACACAGGTGCACG
AGTGGCTCGAGTACAGTAGCTGTCCTTCAAACCTGAAAGCTGCGCTTGTA
TTTGAGCATGACTCCGTCTCTTCAAACAAGTAAATTGTGGCATCTTACGG
TGCCTTCCTTTTCCTGCATAGTGCTACTTACTTATCGACGGCAAATGGAT
ATGCTTTTACTTCAACGTTTCATGCCAGAAGCTGCTTGGATCGTTGTGGT
GCATAATGCAGCTGCGGGTTTTCGCACACCCCAGTGGCCTGAGGTGGACG
CAATGGGTGCCACGGAATGTGTCAGTGAATCTGAAACACTCTGTCTGATG
CTGCCGCTGACTTGTTGATACGAAATGTTGAACTTGCAGGAACATGCTAC
CTGCTGGGGGCCCTGGCAAGTCTGTCAGCGCACAAGGGGCACCTGGAGAG
CATCTTTGTGGCACACGACTTTGAGGCCGGTGTGGTCGCCGTGCGCTTCT
TCGACCATAACTCCTGGAAGCACGTCATCATCGATGACCTCATCGGCTGC
AACGCGGACGGCGCGATTTTGTACTCACACTGCAAGGATGCAAATGATGT
GCGTACCTGCGGTAACCTTGACATGGCGTGCTCTAGCTCAGCAAGTGCTG
AAGCTTTCTGATCGCTGCACTGCAGCTGTCATTCAGCAGTCAATGTGTAT
CAAGAGCTTTGCCGTTGCAGCCGGCCATGTGTCTGGTACGTGGCATCTTC
ACAAGGACAATGATCCCTTCATGCGTTATTTTCGAAACATTCAAGTACTA
CATATACTAAAAGTAGGGCACCGGATGAAGCTTTCAGGCTGTAGTGATCC
AGGCTCATACGGGATTACTTATTCATGCGGAGGCTTTTGGCTAATAGGTA
AGCCCCTGATCGTTGATCATTATGATACTTCTATGTGGACTTAAAATATA
TATGCTGAAGTAACAAGACACATGACTGTTGTAATGATTTCGATCAACGG
CTTTCAGCAATTGTGAAATACTTCGAAGCTTCTAGTAGAAGTAATTTTCC
GAACAAAATGGCTGGAACTGCAAATATATTGCCAGCCTCATCTCAGTCTG
CCCCGATCTGATGACAAGCAACATTGAGTGGCTCAAGACACACATGCTAC
AATGCACACTGTTTGCCGTTGTGGTGCCGGCATACACTAATAAAATGCAT
GATCCTATTGGTGACTGCAGTTCTGGCTGCCACTAATTGAGAAGGCGTGG
GTCAAGCTTCTTGGCTGCTACGAGCAAGCCCAAAGTGGCCATGAGCATCA
CGCACTCATGGACCTGACAGGTGGGCAGTTATTGCATTATGATGCAATAA
CCTCAACAGCCTTGCTCTGCTGCCATCGTGATGCCCCTCTCTACTAG
back to top

Coding sequence (CDS) from alignment at Contig_214:59294..62240-

>mRNA_17818 ID=mRNA_17818|Name=jgi.p|Trimin1|180321|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=582bp|location=Sequence derived from alignment at Contig_214:59294..62240- (Tribonema minus UTEX_B_3156 )
ATGCGCGGCGAGAAGTATCAAGATCCCTCTTTTCCAGTGCTGTCCCACCC
CGCGGACTGTCTTTACATCAACGCGAACAAGCCCAACTCGGGCATCGACG
TACCAGCGCAGTGGCTGCGCCCCACTGACCTTTGCTCAGCCCCGCAACTA
TTCATCGAGGGCGTGAACGCTGGGGACATTCAACAGGGCACCCTTGGAAC
ATGCTACCTGCTGGGGGCCCTGGCAAGTCTGTCAGCGCACAAGGGGCACC
TGGAGAGCATCTTTGTGGCACACGACTTTGAGGCCGGTGTGGTCGCCGTG
CGCTTCTTCGACCATAACTCCTGGAAGCACGTCATCATCGATGACCTCAT
CGGCTGCAACGCGGACGGCGCGATTTTGTACTCACACTGCAAGGATGCAA
ATGATTTCTGGCTGCCACTAATTGAGAAGGCGTGGGTCAAGCTTCTTGGC
TGCTACGAGCAAGCCCAAAGTGGCCATGAGCATCACGCACTCATGGACCT
GACAGGTGGGCAGTTATTGCATTATGATGCAATAACCTCAACAGCCTTGC
TCTGCTGCCATCGTGATGCCCCTCTCTACTAG
back to top