mRNA_17702 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131365
Unique NamemRNA_17702
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|131365 vs. uniprot
Match: A0A835Z3K1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.710e-37
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 MGNVDSIPVASQVKSAVQVCQGDVQGALETQDTFSKRCLVVXXXXXXXXXXXXXXXXXXXXXQEFVSPDNMRLLMSPSVDCVPVLAXXXXXXXXXXXXXXXXXXXXXRFSQTCVGVS 351
            MGNVDSIPVASQVKSAVQVCQGDVQGALETQDTFSKRCLVVXXXXXXXXXXXXXXXXXXXXXQEFVSPDNMRLLMSPSVDCVPVLAXXXXXXXXXXXXXXXXXXXXXRFSQTCVGVS
Sbjct:    1 MGNVDSIPVASQVKSAVQVCQGDVQGALETQDTFSKRCLVVXXXXXXXXXXXXXXXXXXXXXQEFVSPDNMRLLMSPSVDCVPVLAXXXXXXXXXXXXXXXXXXXXXRFSQTCVGVS 117
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BLAST of jgi.p|Trimin1|131365 vs. uniprot
Match: A0A0L0G702_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G702_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 3.960e-9
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 MGNVDSIPVASQVKSAVQVCQGDVQGALETQDTFSKRCLVVXXXXXXXXXXXXXXXXXXXXXQEFVSPDNM 213
            MGNVDS+P+ SQ KSAVQ C GD+ GA  TQ+ FSK+C++ XXXXXXXXXXXXXXXXXXXXX EF+ P N+
Sbjct:    1 MGNVDSVPIVSQAKSAVQACHGDMDGATRTQENFSKQCVIXXXXXXXXXXXXXXXXXXXXXXLEFIDPKNL 71
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BLAST of jgi.p|Trimin1|131365 vs. uniprot
Match: A0A2A2LHX8_9BILA (Uncharacterized protein n=2 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2LHX8_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 3.520e-6
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 MGNVDSIPVASQVKSAVQVCQGDVQGALETQDTFSKRCLVV 123
            MGN DSIPV SQ KS VQV  GD +GA +TQ+ FS++CL+V
Sbjct:    1 MGNTDSIPVVSQTKSLVQVTFGDKKGARQTQENFSRQCLLV 41
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BLAST of jgi.p|Trimin1|131365 vs. uniprot
Match: A0A0L0HR71_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HR71_SPIPD)

HSP 1 Score: 53.5 bits (127), Expect = 1.230e-5
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 MGNVDSIPVASQVKSAVQVCQGDVQGALETQDTFSKRC 114
            MG +DS+PV SQ+KSAVQ  +GD++GA  TQ+ FSK C
Sbjct:    1 MGFIDSVPVLSQIKSAVQAARGDLEGASRTQEKFSKEC 38
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BLAST of jgi.p|Trimin1|131365 vs. uniprot
Match: A0A813JHG1_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JHG1_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 9.070e-5
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 MGNVDSIPVASQVKSAVQVCQGDVQGALETQDTFSKRC 114
            MGN +S+PV SQ+KSAVQ  QGD+ GA ETQ  F ++C
Sbjct:    1 MGNAESMPVVSQLKSAVQAAQGDLAGAEETQQRFIRQC 38
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131365 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z3K1_9STRA2.710e-37100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A0L0G702_9EUKA3.960e-970.42Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A2A2LHX8_9BILA3.520e-663.41Uncharacterized protein n=2 Tax=Diploscapter pachy... [more]
A0A0L0HR71_SPIPD1.230e-560.53Uncharacterized protein n=1 Tax=Spizellomyces punc... [more]
A0A813JHG1_POLGL9.070e-560.53Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_212contigContig_212:165530..165952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131365|gw1.212.13.1
GOsGO:0001836,GO:0002376,GO:0003254,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006915,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008219,GO:0008637,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010466,GO:0010605,GO:0010646,GO:0010648,GO:0010941,GO:0010951,GO:0012501,GO:0016020,GO:0016043,GO:0019221,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030162,GO:0031323,GO:0031324,GO:0032268,GO:0032269,GO:0034097,GO:0034340,GO:0042221,GO:0042391,GO:0042592,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043281,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045087,GO:0045861,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051716,GO:0051881,GO:0051900,GO:0051902,GO:0052547,GO:0052548,GO:0060255,GO:0060337,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071345,GO:0071357,GO:0071840,GO:0071944,GO:0080090,GO:0097190,GO:1901099,GO:1904180,GO:2000116,GO:2000117,GO:2001233,GO:2001234,GO:2001236,GO:2001237,GO:2001239,GO:2001240
Preferred nameIFI6
Descriptionnegative regulation of mitochondrial depolarization
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E5JF@1|root,2SCCP@2759|Eukaryota
Evalue6.5e-10
Seed ortholog72019.SARC_03079T0
Hectar predicted targeting categoryother localisation
TranscriptId131687
TrackFilteredModels1
ProteinId131365
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131365gene_17702Tribonema minus UTEX_B_3156 geneContig_212 165530..165952 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17702_1exon_17702_1Tribonema minus UTEX_B_3156 exonContig_212 165530..165952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17702CDS_17702Tribonema minus UTEX_B_3156 CDSContig_212 165530..165952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131365Trimin1|131365|gw1.212.13.1Tribonema minus UTEX_B_3156 polypeptideContig_212 165530..165952 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17702 ID=mRNA_17702|Name=jgi.p|Trimin1|131365|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_212:165530..165952- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAACGTCGATTCCATTCCCGTGGCATCCCAGGTCAAGTCCGCTGT
CCAAGTGTGTCAAGGCGATGTGCAAGGTGCCTTGGAAACGCAGGACACCT
TCTCTAAGCGGTGCCTCGTGGTATCCCAGGTGAGGTCGGCGGTGGAAGCG
TCTGTCGGCAATCGCGATGCGGCTCTCAGGACTCAGCAGGAGTTCGTGTC
CCCGGACAACATGCGCCTGCTGATGAGCCCCAGCGTCGACTGCGTGCCGG
TGCTGGCCCAGCTCAAGTCGGCGGTGCAGGCGGCCAACGGCGACATGGGC
GGCGCCGCCCAGACGCAGCGGCGGTTCTCCCAGACCTGCGTCGGGGTCTC
GCAGCTGCGCTCCGCCGTCGAGGCGTCGATGGGCGATCTGAGCGCTGCCG
CGCGGACGCAGCGCGAGTTCATC
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protein sequence of jgi.p|Trimin1|131365

>Trimin1|131365|gw1.212.13.1 ID=Trimin1|131365|gw1.212.13.1|Name=jgi.p|Trimin1|131365|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
MGNVDSIPVASQVKSAVQVCQGDVQGALETQDTFSKRCLVVSQVRSAVEA
SVGNRDAALRTQQEFVSPDNMRLLMSPSVDCVPVLAQLKSAVQAANGDMG
GAAQTQRRFSQTCVGVSQLRSAVEASMGDLSAAARTQREFI
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mRNA from alignment at Contig_212:165530..165952-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17702 ID=mRNA_17702|Name=jgi.p|Trimin1|131365|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_212:165530..165952- (Tribonema minus UTEX_B_3156 )
ATGGGCAACGTCGATTCCATTCCCGTGGCATCCCAGGTCAAGTCCGCTGT
CCAAGTGTGTCAAGGCGATGTGCAAGGTGCCTTGGAAACGCAGGACACCT
TCTCTAAGCGGTGCCTCGTGGTATCCCAGGTGAGGTCGGCGGTGGAAGCG
TCTGTCGGCAATCGCGATGCGGCTCTCAGGACTCAGCAGGAGTTCGTGTC
CCCGGACAACATGCGCCTGCTGATGAGCCCCAGCGTCGACTGCGTGCCGG
TGCTGGCCCAGCTCAAGTCGGCGGTGCAGGCGGCCAACGGCGACATGGGC
GGCGCCGCCCAGACGCAGCGGCGGTTCTCCCAGACCTGCGTCGGGGTCTC
GCAGCTGCGCTCCGCCGTCGAGGCGTCGATGGGCGATCTGAGCGCTGCCG
CGCGGACGCAGCGCGAGTTCATC
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Coding sequence (CDS) from alignment at Contig_212:165530..165952-

>mRNA_17702 ID=mRNA_17702|Name=jgi.p|Trimin1|131365|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=423bp|location=Sequence derived from alignment at Contig_212:165530..165952- (Tribonema minus UTEX_B_3156 )
ATGGGCAACGTCGATTCCATTCCCGTGGCATCCCAGGTCAAGTCCGCTGT
CCAAGTGTGTCAAGGCGATGTGCAAGGTGCCTTGGAAACGCAGGACACCT
TCTCTAAGCGGTGCCTCGTGGTATCCCAGGTGAGGTCGGCGGTGGAAGCG
TCTGTCGGCAATCGCGATGCGGCTCTCAGGACTCAGCAGGAGTTCGTGTC
CCCGGACAACATGCGCCTGCTGATGAGCCCCAGCGTCGACTGCGTGCCGG
TGCTGGCCCAGCTCAAGTCGGCGGTGCAGGCGGCCAACGGCGACATGGGC
GGCGCCGCCCAGACGCAGCGGCGGTTCTCCCAGACCTGCGTCGGGGTCTC
GCAGCTGCGCTCCGCCGTCGAGGCGTCGATGGGCGATCTGAGCGCTGCCG
CGCGGACGCAGCGCGAGTTCATC
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