mRNA_17683 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180700
Unique NamemRNA_17683
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180700 vs. uniprot
Match: A0A836CH95_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH95_9STRA)

HSP 1 Score: 221 bits (564), Expect = 2.190e-73
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 RKVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKADIVFNDNEVYRML 318
            RKVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKADIVFNDNEVYRML
Sbjct:    1 RKVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKADIVFNDNEVYRML 106
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BLAST of jgi.p|Trimin1|180700 vs. uniprot
Match: F0Y971_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y971_AURAN)

HSP 1 Score: 141 bits (355), Expect = 1.130e-41
Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    1 RKVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKAD 282
            +KV+ELV+ HGA+KWSQIA QLPGR  KQCRERWHNHL+P+I+KA ++ EE R IL+    LGN+WAEIAK +PGRTDN++KNH+NSS+KRK +
Sbjct:    1 QKVIELVKQHGARKWSQIAQQLPGRISKQCRERWHNHLNPEISKAAWTEEEDRKILSSHAKLGNRWAEIAKLLPGRTDNAIKNHWNSSIKRKYE 94
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BLAST of jgi.p|Trimin1|180700 vs. uniprot
Match: A0A7S4JCR9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JCR9_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.320e-41
Identity = 67/94 (71.28%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 RKVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKAD 282
            RKVVELV  HGA++WSQIAA+LPGR GKQCRERWHNHL+PDI+K P+  EE RII+    +LGN+WAE+AKH+PGRTDN++KNH+NSSMKRK +
Sbjct:  143 RKVVELVTAHGAKRWSQIAAELPGRIGKQCRERWHNHLNPDISKKPWMEEEDRIIIENHESLGNRWAEMAKHLPGRTDNAIKNHWNSSMKRKVE 236
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BLAST of jgi.p|Trimin1|180700 vs. uniprot
Match: A0A7S2UDC6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDC6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 4.800e-41
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    1 RKVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKAD 282
            RKV+ LV  HGA+KWSQIAA+LPGR GKQCRERWHNHL+PDI K+P+S EE RII+    +LGNKWAEIAK +PGRTDN++KNH+NSSMKRK +
Sbjct:  137 RKVISLVMTHGAKKWSQIAAELPGRIGKQCRERWHNHLNPDICKSPWSEEEDRIIIQSHESLGNKWAEIAKLLPGRTDNAIKNHWNSSMKRKVE 230
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BLAST of jgi.p|Trimin1|180700 vs. uniprot
Match: A0A1E7FEX6_9STRA (Ternary protein-Dna Complex1 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEX6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.150e-41
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 RKVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKAD 282
            RKVVELV+ HGA+KWS IA  LPGR GKQCRERWHNHL+PDI+K  +  +E R IL    TLGN+WAEIAK +PGRTDN++KNH+NSSM+RK +
Sbjct:   85 RKVVELVKKHGAKKWSLIATNLPGRIGKQCRERWHNHLNPDISKEAWKEDEDRTILESHITLGNRWAEIAKMLPGRTDNAIKNHWNSSMRRKIE 178
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BLAST of jgi.p|Trimin1|180700 vs. uniprot
Match: B8CD10_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CD10_THAPS)

HSP 1 Score: 138 bits (348), Expect = 1.840e-40
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    4 KVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIIL-AQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKAD 282
            KV ELV  +GA+KWSQIA +LPGR GKQCRERWHNHL+PDI K+P+S +E R+IL AQ+  +GN+WA+IAK + GRTDNS+KNH+NSSMKRK +
Sbjct:   11 KVRELVGKYGAKKWSQIAEELPGRIGKQCRERWHNHLNPDIKKSPWSEDEDRVILQAQKDGIGNRWADIAKMLNGRTDNSIKNHWNSSMKRKVE 104
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BLAST of jgi.p|Trimin1|180700 vs. uniprot
Match: D2UY60_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UY60_NAEGR)

HSP 1 Score: 138 bits (348), Expect = 2.280e-40
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    4 KVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKAD 282
            +VVELV+ +GA+KWS IA  LPGR GKQCRERWHNHL+PDINK P++ EE RII    +  GNKWA+IAK +PGRTDN++KNH+NS+M+RK +
Sbjct:   15 QVVELVKKYGAKKWSLIAQHLPGRIGKQCRERWHNHLNPDINKGPWTEEEDRIIYQAHKDYGNKWAQIAKLLPGRTDNAIKNHWNSTMRRKME 107
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BLAST of jgi.p|Trimin1|180700 vs. uniprot
Match: A0A1E7EJ97_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJ97_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.810e-39
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 RKVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKAD 282
            RKVVELV+ HGA KWS IA  LPGR GKQCRERWHNHL+PDI+K  +  +E R IL    TLGN+W EIAK +PGRTDN++KNH+NSSM+RK +
Sbjct:   21 RKVVELVKKHGA-KWSLIATNLPGRIGKQCRERWHNHLNPDISKEAWKEDEDRTILESHITLGNRWTEIAKMLPGRTDNAIKNHWNSSMRRKIE 113
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BLAST of jgi.p|Trimin1|180700 vs. uniprot
Match: A0A6H5JPJ5_9PHAE (MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPJ5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.520e-39
Identity = 69/96 (71.88%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    4 KVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKADIVF 291
            +V ELV   GA+KWS IAAQLPGRTGKQCRERWHNHL+P I+K P+S  E   IL Q + LGNKWAEIAK +PGRTDN++KNH+NSSMKRKA+IVF
Sbjct:  179 RVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAEIVF 274
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BLAST of jgi.p|Trimin1|180700 vs. uniprot
Match: A0A7S2WMH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMH6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 7.490e-39
Identity = 60/93 (64.52%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    4 KVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAEEQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKAD 282
            KV+ELV++HG +KW+ IA  LPGR GKQCRERWHNHL+P I+K  +S +E R+IL     LGN+WAEIAK +PGRTDN++KNH+NSSMKRK +
Sbjct:   95 KVIELVKLHGPKKWTMIADCLPGRIGKQCRERWHNHLNPKISKLAWSEDEDRVILEAHEKLGNRWAEIAKRLPGRTDNAIKNHWNSSMKRKIE 187
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180700 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH95_9STRA2.190e-73100.00Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
F0Y971_AURAN1.130e-4167.02Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S4JCR9_9STRA1.320e-4171.28Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2UDC6_9STRA4.800e-4172.34Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1E7FEX6_9STRA7.150e-4168.09Ternary protein-Dna Complex1 (Fragment) n=1 Tax=Fr... [more]
B8CD10_THAPS1.840e-4068.09Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
D2UY60_NAEGR2.280e-4065.59Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
A0A1E7EJ97_9STRA2.810e-3967.02Homeodomain-like protein (Fragment) n=1 Tax=Fragil... [more]
A0A6H5JPJ5_9PHAE3.520e-3971.88MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S2WMH6_9STRA7.490e-3964.52Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_225contigContig_225:137179..139545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180700|e_gw1.225.29.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko05166,map04151,map05166
KEGG koko:K09420
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue4.79e-40
Seed ortholog2880.D8LAU7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-27_006330.1
TranscriptId181022
TrackFilteredModels1
ProteinId180700
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180700gene_17683Tribonema minus UTEX_B_3156 geneContig_225 137179..139545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180700Trimin1|180700|e_gw1.225.29.1Tribonema minus UTEX_B_3156 polypeptideContig_225 137179..139545 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17683_1exon_17683_1Tribonema minus UTEX_B_3156 exonContig_225 137179..137220 +
exon_17683_2exon_17683_2Tribonema minus UTEX_B_3156 exonContig_225 137785..137874 +
exon_17683_3exon_17683_3Tribonema minus UTEX_B_3156 exonContig_225 138624..138671 +
exon_17683_4exon_17683_4Tribonema minus UTEX_B_3156 exonContig_225 139124..139189 +
exon_17683_5exon_17683_5Tribonema minus UTEX_B_3156 exonContig_225 139471..139545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17683CDS_17683Tribonema minus UTEX_B_3156 CDSContig_225 137179..137220 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17683 ID=mRNA_17683|Name=jgi.p|Trimin1|180700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_225:137179..139545+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGAAGGTGGTGGAGCTGGTCCAGGTGCACGGCGCGCAGAAGTGGTCGCA
GATCGCCGCGCAGCTGCCGGGCAGGACCGGCAAGCAGTGCCGTGAGCGGT
GGCACAACCACCTCAGCCCGGACATCAACAAGGCGCCCTTCTCCGCGGAG
GAGCAGCGCATCATCCTGGCGCAACGGCGGACCCTGGGGAACAAGTGGGC
GGAGATCGCCAAGCACGTTCCGGGGCGCACGGACAATTCCGTCAAGAACC
ACTACAACTCGAGCATGAAGCGGAAGGCCGACATTGTGTTCAATGACAAC
GAGGTCTACCGCATGCTGTAA
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protein sequence of jgi.p|Trimin1|180700

>Trimin1|180700|e_gw1.225.29.1 ID=Trimin1|180700|e_gw1.225.29.1|Name=jgi.p|Trimin1|180700|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
RKVVELVQVHGAQKWSQIAAQLPGRTGKQCRERWHNHLSPDINKAPFSAE
EQRIILAQRRTLGNKWAEIAKHVPGRTDNSVKNHYNSSMKRKADIVFNDN
EVYRML*
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mRNA from alignment at Contig_225:137179..139545+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17683 ID=mRNA_17683|Name=jgi.p|Trimin1|180700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2367bp|location=Sequence derived from alignment at Contig_225:137179..139545+ (Tribonema minus UTEX_B_3156 )
AGGAAGGTGGTGGAGCTGGTCCAGGTGCACGGCGCGCAGAAGGTCAGTGC
TCAGTCCCGCACGCCGCTGCTGACGCCATTGCTGCTGCGGCCATTGAGTG
CTGCTGGCCGCATTGCATGGCGCGCAGAATGGCAGTGCCCAGCGCAGCGC
CTGCTGCAGCCGCGACGCGCACACGCGGGCGCCGCTGCGCCATGGGGACC
GGGAACGGGGGGACTGCATCAGCGCTCAGATGCTTCGCCTAGCGCGCGCT
TCCAGACGCCATGTCGTCGTGAGCTCTGCAGCGTGTGAACTTGAAACGTT
GTGCCACGTTCCGCTGCTGCGCGCGTCTGGGCGCTGCCTCGGCCTGAACT
TGTGCCTTTTGCTCGCCTCGTCTCGTCGACAGCGTACGCGCAGCAGATGA
AGTACCCTGCACACACACACACACACACCCTCTCACTGCACTGAAATGTG
TACGCAAAAGGCCCGACCGGTACCATGACGCGTGCTTCAACTCAGAGCTC
CTTGCCTTTGGGGCGTCTCCTTGCCTTTGGGGTGTCACCTGCACACTCTC
GCTCACGTCGCTCCTCGCGCCGTCTGCGCCCCCCCCCCCCCCCGGCGCGC
ACGCAGTGGTCGCAGATCGCCGCGCAGCTGCCGGGCAGGACCGGCAAGCA
GTGCCGTGAGCGGTGGCACAACCACCTCAGCCCGGACATCAACAAGGTGA
GCGCGGGAGAGCGCGCTGCTGCTGCTGCCCACTTCAAGTTGAAGTGCGGA
CGCACCAGCGCAGCGACGAGGCTGCCCTGCCGCTTGCGCATGTGATGGGC
GCGGCCCGGTGCGCGCGTGCCTCTCCTCGCCCTCAACTGTTAGTGAGCGC
GTGACATAAACAGGGCGCATGCCTGCGAGCAACAGCGCACCCACATTCTC
GTCGGCACGCGCTTGGGCGGCAGTTTTTGACTGGTGTTCGGGATGACAGC
ACCTTAGCAGCAGTTGTGCAGGATGCGCAGTCTTTCGCCCTGGGCCTAGG
GTTACGGGACGCCGTCGCTCAGCCCCCGGCGTGGTCGTCTTCGTGAAGTT
CGACGGCGACGCTCCCCAGCGCGCCGCTTCAACAGGTAGTTGAAGAAACA
CACTTGCTGCCATGCAGCAGGTTTGCGTACAGCAGGGCGAGTAGGCAACA
ACCTTGCTGGCTGCACGAGCGAGCGGAGCGTCACCGCCACATGTGGAGCG
TCATCGGTGCGCAAGCGCGCCCCACACATTGCATTTCGCAGCGCCCGGCG
GCGACGCGTGGAGCCGCGACGCCTGGGTCCGCTATGTAACGGCGCAGCGC
GCGAGTGGTGCGCGCCGCAATTGTGCACGCAGCTCGACCACCGTGGGGTC
ACGCGGAGCGTAAAACCGCATGCGCGCGCTGGTGCATCTTCAAGTACATA
TTGCTGACGTGCTGTTGCGCGCCGCTCGTGTCGTCTGCGCTGCAGGCGCC
CTTCTCCGCGGAGGAGCAGCGCATCATCCTGGCGCAACGGCGGGTACGTC
TTCAGAGTCATGTGCGCATGCGCCTGCTGGCGTGGCTGAAATTGAAGTAC
GTCAGAGTTGCACCGTTCTATCAGCGTCTGTTTGATCAAGTTGAGACTTG
TTCTTTGTTTCTAGAATGCCGTCGGTGCTCAAAAGGTGATTGCAGGTGTG
GTCCTGCATTCGTTGTTGCGCCAATGGTATTTTGCGTAGGTGTCATGTTT
TCTCGCCAGCGCGGTGCTTCCGCATGTACCGCCGTGCCTGCGAGCAGCTC
TCGAACACTAGCTGCGGTGGTGGCATGTCACGCTCGAGGACTGCCGATGC
GCGCGCACTTTCACACCCTCTGAACTGAGTCTACGCACATGTCTGCGCTC
TGACTCCGGCTTGACGTCGCCTGGCGTATATTAATCTGCGAGCTGTGCGG
TCAAGTCTAAATGTCAAACGCTTCAACGGCTTTTTTTGCACGCAGACCCT
GGGGAACAAGTGGGCGGAGATCGCCAAGCACGTTCCGGGGCGCACGGACA
ATTCCGTCAAGGTACGTTCCTTGCGCGCTTGGCCCGAAAATGTGGCGTGA
GGCGCGCGCCGGCGCGCTGCGCTTGAAAACGGCAGAGTCTGCTGCACAAG
CCTGCCTGCGCCCACTGTGTCCAGGACTACAGCCGTACAAAGTCACTGCA
CCGGACGCTGTCGCCGCGCTGCTGCTGCTGCGCCGTGCCTGTGTGCGCCG
CCGCACCGTCGCCGCCGCACGCCCTGACACGCCACTGCTGACGCCGCCGC
TGCTGCTGCTGCGCCGCCGCTGCACGTCCCGCGCTCCCGCAGAACCACTA
CAACTCGAGCATGAAGCGGAAGGCCGACATTGTGTTCAATGACAACGAGG
TCTACCGCATGCTGTAA
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Coding sequence (CDS) from alignment at Contig_225:137179..139545+

>mRNA_17683 ID=mRNA_17683|Name=jgi.p|Trimin1|180700|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_225:137179..139545+ (Tribonema minus UTEX_B_3156 )
AGGAAGGTGGTGGAGCTGGTCCAGGTGCACGGCGCGCAGAAGTGGTCGCA
GATCGCCGCGCAGCTGCCGGGCAGGACCGGCAAGCAGTGCCGTGAGCGGT
GGCACAACCACCTCAGCCCGGACATCAACAAGGCGCCCTTCTCCGCGGAG
GAGCAGCGCATCATCCTGGCGCAACGGCGGACCCTGGGGAACAAGTGGGC
GGAGATCGCCAAGCACGTTCCGGGGCGCACGGACAATTCCGTCAAGAACC
ACTACAACTCGAGCATGAAGCGGAAGGCCGACATTGTGTTCAATGACAAC
GAGGTCTACCGCATGCTGTAA
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