mRNA_17655 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133551
Unique NamemRNA_17655
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A835Z1P3_9STRA (DUF1084 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P3_9STRA)

HSP 1 Score: 567 bits (1461), Expect = 1.460e-203
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 1
Query:    1 IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGEAAAAATA 918
            IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGEAAAAATA
Sbjct:    1 IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGEAAAAATA 306          
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: D7FRE0_ECTSI (DUF1084 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE0_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 2.450e-78
Identity = 148/295 (50.17%), Postives = 202/295 (68.47%), Query Frame = 1
Query:    1 IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYS-LAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVL 882
            ++F +LGAAP+I++LLY      A  KL +M    +  L+T+KLF M++LL C+TR MGF+TIG  ALN++S+          GGD G+     ++ D+D+RFY+K +LVLFD PDF+ +SAY+LLAVVWAEAFL SR HWLSAR Y++  L+ Y++FN+ALY  QL+LY  LFLPS         LY  +T+VN  LPLLLA LF YLT +FSGFPY++E A+ R    GR +++WTA RV WG   LTA L++  L  S+ + +  +YS+L+V LFL TEL+P   ALDD++L
Sbjct:    4 VMFAQLGAAPLIMSLLYGATFLHALGKL-RMLHGKSRSLDTKKLFAMSVLLLCLTRTMGFMTIG--ALNMRSV----------GGD-GSSSRRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRVGRVVMLWTAARVVWGLSTLTAVLEFQRLVGSATSLREQVYSILVVTLFLTTELYPLLGALDDELL 284          
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: W7TTU2_9STRA (DUF1084 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTU2_9STRA)

HSP 1 Score: 218 bits (556), Expect = 4.620e-65
Identity = 131/302 (43.38%), Postives = 191/302 (63.25%), Query Frame = 1
Query:    1 IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGEAAA 906
            +I D LG  P ILALLYL    + SS+L  +       +NT KLFV+++LL+C  R + F+ +G  A ++QSI +  D        S +       QD D +FY+K +L+LF+ PDFV +SAY LLA+VWAEAF+ SRSHWLS +++R+ +L++YLVFNA LY+ QL+LY  LFLP     + ++ ++  L  +NF LP++L  LF YL++ F+GFPY++ RA  +     + +  WT GR+ WG   LT+ LQ  L  S A +   +YSV++V LFL+TEL PF  A+D  +LA +  A+A
Sbjct:    2 LILDGLGVTPFILALLYLATTALISSRLRNLHTRHPE-MNTTKLFVLSVLLSCGMRCLSFIALG--AFSVQSIAIDNDASGRASSPSSSWSS---TQDPDTQFYEKALLILFNLPDFVFVSAYVLLALVWAEAFIQSRSHWLSIKQFRRMWLLSYLVFNACLYLGQLVLYTLLFLPHGNQDFLSKIIFLTLCVINFSLPIILLLLFFYLSIMFAGFPYKSRRAPAKLNKISKVMAWWTIGRIIWGIVVLTSILQGWL--SDAHKDRQVYSVVLVGLFLITELIPFFVAMDVSLLASLSTASA 295          
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A7S1U079_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U079_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.840e-49
Identity = 114/284 (40.14%), Postives = 166/284 (58.45%), Query Frame = 1
Query:   34 ILALLYLYVMGVASSKLSKMRKASTG-GLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVL 882
            IL+ LY  +     S+L KM  A TG  L+T+KLFV+T+LL CV R + FV  G  +L +QSI  G           G D+DD   +D D+ FY+K VLV+FD PD+  ++AY LL +V+AE FL +R HWL   + R+ +++ YL  N+ LY  Q+ LY  LF+P  P     + L+  L  ++F LP+ +A  + YLT  FS FPYR++ A +R    G  + +WT GR  WG FA+  +L +   ++  A     YS +++ LF+ TEL PF  ALD ++L
Sbjct:   15 ILSFLYASMTVYTFSRL-KMLHAITGQALDTQKLFVVTLLLTCVLRTLSFV--GLTSLAVQSIEYG-----------GDDNDDTGERDEDEEFYEKAVLVMFDLPDYTIVTAYLLLVIVYAETFLHARRHWLDPIQMRRRWVVWYLGANSVLYGVQITLYTLLFVPRVPQSLLIQLLFITLGAISFCLPIAVAIGYFYLTYRFSAFPYRSQHAAKRVKKVGLVMKVWTVGRFIWGCFAVFFSLSFVSTSNDTA-----YSTVLICLFVCTELIPFLLALDTEIL 279          
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A7S1U7L3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7L3_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.360e-40
Identity = 107/298 (35.91%), Postives = 170/298 (57.05%), Query Frame = 1
Query:    4 IFDELGAAPIILALLY----LYVMGVASSKLSKMRKASTGGL-NTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVL 882
            + D L AAP++LA+ Y    LY++    SKL K  K S   L +T KL   +M   CV R + F+TI    +N +   +G+    +       +     RQ ++  F++K +LVLFD PD++ ++ + LL +VWAE FL SR+HWLS++ +R+  L+ YLVFNA +Y  QL+LY  LF+P+  T      L+ ++  +NF +P+    + +YL   F+ FPY+  R+        R ++ WT GRV W   A++A ++  L   S + +   Y+V++VA+F +TEL PF+ AL+ D L
Sbjct:    4 VLDGLRAAPMLLAIAYGCYGLYIL----SKLRKFLKYSGSKLLDTRKLLAASMFFVCVFRCLTFITIA--LVNRRGYALGFHGSSNPVATVVQEGPQKLRQ-ANLDFFEKSMLVLFDLPDYMIVTTFTLLVLVWAEVFLDSRAHWLSSKTFRRRALIGYLVFNATVYATQLVLYSLLFVPTISTKGLRVLLFCSVAVLNFFVPITFLGVAIYLYCQFAAFPYKGVRSRLALERTTRVVIWWTGGRVLWAMTAVSAGMRDWLTNWSGSSE--FYAVVLVAVFGLTELMPFSVALEPDFL 292          
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A067CCW6_SAPPC (DUF1084 domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CCW6_SAPPC)

HSP 1 Score: 139 bits (351), Expect = 1.580e-35
Identity = 94/302 (31.13%), Postives = 157/302 (51.99%), Query Frame = 1
Query:   16 LGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPT-------------GWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVL 882
            L  A   LAL Y+ +  ++ SKL   R  +     T +L +MT+ L C+ R   F T+  C L+ Q       P           DD  + ++SD  FY+K V VLF+ PD++ +SAY L+ ++WAE F +SR HW SA ++ + +++ YL+FN  LY+ Q++LYG LFL                        ++  +   +  LP ++   +MYL+V+ SGFPY++  A  + +  GR  L+W+ GR+ +    L    +     ++  +  ++ S+L+VALF++ E+ P  + LD D+L
Sbjct:    9 LAMASYFLALCYMLMTFISVSKLYATRHKNASMSRTTQLLLMTISLGCLFRTATFTTL--CFLDFQHTDASLSPLS---ARFQVPDDTPHAEESDLSFYNKVVAVLFNLPDYLFVSAYLLVVLLWAETFQSSRRHWFSADQFHRKWMVFYLIFNGGLYLTQVVLYGLLFLKEDGAIAGIFDNDAGTRLALIPSLIFYTVAAADLALPAIILGTWMYLSVTLSGFPYKSVHAKAKLSKVGRVALVWSLGRILYSVMILLTFTKGWF--NTEKDTVSMQSMLLVALFVLAEITPIYSLLDSDLL 303          
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A7R9VVQ9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVQ9_9STRA)

HSP 1 Score: 139 bits (351), Expect = 7.520e-35
Identity = 95/295 (32.20%), Postives = 161/295 (54.58%), Query Frame = 1
Query:   10 DELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVG 894
            D L  A ++ ++LY++ + +A+ KL+ + + S   L+T+KL V+++ L C  R+M F  IG  A+++ ++R  Y        D         R D +Q+FYD    V+FD P+ V +S + LL +VWAE FL SR H  SA +++  +L  Y++FNA LY  Q++LY  + LP +        LYA  T +NF   +L+  L++YL++SFSGFP+R+             + +W+  RV WG+  L   ++ ++     ++   + +V++  LFL  E+ P    LD   + +VG
Sbjct:   37 DFLTVALLLSSVLYMFCLVLATRKLAFLNRVSGRELSTKKLLVLSVGLVCAIRIMSF--IGVAAMDIANVRAHYSLKPTSTTDRNGSST--ARMDRNQKFYDAAFTVMFDLPNVVVVSTFVLLTLVWAECFLQSRFHTESAAKWQMRWLTGYMLFNALLYGTQIILYVLVILPVTAK-IVRTVLYALSTGINFAAVVLVLGLYIYLSLSFSGFPFRSIHLKESLRKISNVMALWSLSRVVWGSAMLVIYMK-NVELLQDSKTPVVSAVVLFFLFLFCEITPIVVMLDYSYMNMVG 325          
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A7S2SVF8_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVF8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 8.170e-34
Identity = 94/261 (36.02%), Postives = 146/261 (55.94%), Query Frame = 1
Query:  115 LNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGE 897
            ++T +LF +++  ACV R   +V  G   L+ Q + +          ++ A+DD       D  F +  V VLFD PDF+ LSAY LL + WAE+ + SR HWLS R +++   ++YLV N  LY+ QL+LYG +FL +S    +++ L   L+ +N+GLP L  + ++Y T+ FSGFP+R+     + A+A R + +WT GR+ WG   L+ AL  S A         +  +L V + L++E  PF  ALD   L V+ +
Sbjct:   44 IDTVRLFALSVFGACVLRSASWV--GLACLSYQHVELPSGSTPLHIKETNAEDD-------DVAFVESAVFVLFDLPDFIVLSAYMLLGLAWAESMVTSRLHWLSDRVHQRTLRISYLVVNILLYLTQLVLYGLIFL-NSTDNTSSKLLDFILSGMNWGLPFLFTSFWIYCTIRFSGFPWRSPHHRAKFAIASRMMWVWTFGRLLWGLCTLSTALS-SFATLLGDADQRLRVLLFVVVVLLSEAVPFILALDSGFLHVLAD 293          
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A482T4N9_9ARCH (DUF1084 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T4N9_9ARCH)

HSP 1 Score: 131 bits (330), Expect = 1.590e-33
Identity = 80/215 (37.21%), Postives = 122/215 (56.74%), Query Frame = 1
Query:    4 IFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGF-----VTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTV 633
            +F+ L    I LA++YL ++    SKL  ++  +  GLNT KLFVM++LL C+ R M F     +T+G     L+S  +  D +  DGGD            +++ F+ K  +VLFDFPDF  +SAY LL +VWAE +L SR HWLS+ R++Q ++ +YL+FN  LY  Q  LY  LF+P+         +Y  L   N  LP+    +++Y+++
Sbjct:    4 VFEGLLGGTITLAVIYLVLIIYVYSKLLWLQSNTPQGLNTRKLFVMSILLTCLLRFMSFASMTLLTLGSVHFQLESGGIKTDDNDDDGGDG-----------TNKEFFAKASVVLFDFPDFCFVSAYVLLLIVWAETYLKSRRHWLSSVRFQQVWIWSYLIFNLVLYTTQTALYSLLFIPTIDEYVQTNLIYLTLAGFNLFLPICWIIVYLYMSI 207          
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A7S0PTK0_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PTK0_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.560e-32
Identity = 96/297 (32.32%), Postives = 157/297 (52.86%), Query Frame = 1
Query:   10 DELGAAPIILALLYLYVMGVASSKLS--KMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVG 894
            D L  A ++ ++LY + + +A  K S  K+R    G   T+KL V+++ L C  R+M    +G  A+N+ ++R  Y     D             +  DQ+FYDK + VLFD P+ + +S YALL +VWAE FL SR H  S   +++  L  Y+VFNA LY  QL+LY  +F   S        +YAA+T +NF   L++   ++YL+V+FSGFP+R+++     +   R + +W+  R+ WG   L   + Y++     +       ++++ LF   E+ P  A LD   ++ +G
Sbjct:   12 DMLTVALLMASILYTFCLILAQRKFSVLKLRHREMG---TKKLLVLSVGLVCAVRIMTI--LGVVAMNIANVRAHYSLQPTDLYYVSTT-----TEAKDQKFYDKAMTVLFDLPNCIVVSTYALLTLVWAECFLESRFHTESTLAWKRSGLKCYMVFNALLYATQLVLYTCIFFVPSVKS-VRTIIYAAITGINFTAVLIVLIFYLYLSVNFSGFPFRSQQLRESYSKLSRVMGLWSLTRIVWGIATLLVFI-YNIELLQDSHTPVWSFLVLLLLFFGCEIIPIIAMLDRSYISFIG 296          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1P3_9STRA1.460e-203100.00DUF1084 domain-containing protein (Fragment) n=1 T... [more]
D7FRE0_ECTSI2.450e-7850.17DUF1084 domain-containing protein n=2 Tax=Ectocarp... [more]
W7TTU2_9STRA4.620e-6543.38DUF1084 domain-containing protein n=2 Tax=Monodops... [more]
A0A7S1U079_9STRA2.840e-4940.14Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U7L3_9STRA1.360e-4035.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A067CCW6_SAPPC1.580e-3531.13DUF1084 domain-containing protein n=3 Tax=Saproleg... [more]
A0A7R9VVQ9_9STRA7.520e-3532.20Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2SVF8_9STRA8.170e-3436.02Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A482T4N9_9ARCH1.590e-3337.21DUF1084 domain-containing protein n=1 Tax=archaeon... [more]
A0A7S0PTK0_9STRA1.560e-3232.32Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_218contigContig_218:98436..101639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133551|gw1.218.9.1
Max annot lvl2759|Eukaryota
EggNOG OGs28PC9@1|root,2QVZM@2759|Eukaryota
Evalue4.01e-79
Seed ortholog2880.D7FRE0
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_002580.1
TranscriptId133873
TrackFilteredModels1
ProteinId133551
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133551gene_17655Tribonema minus UTEX_B_3156 geneContig_218 98436..101639 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17655_1exon_17655_1Tribonema minus UTEX_B_3156 exonContig_218 98436..98631 +
exon_17655_2exon_17655_2Tribonema minus UTEX_B_3156 exonContig_218 99888..100372 +
exon_17655_3exon_17655_3Tribonema minus UTEX_B_3156 exonContig_218 101403..101639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17655CDS_17655Tribonema minus UTEX_B_3156 CDSContig_218 98436..98631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133551Trimin1|133551|gw1.218.9.1Tribonema minus UTEX_B_3156 polypeptideContig_218 98436..101639 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17655 ID=mRNA_17655|Name=jgi.p|Trimin1|133551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=918bp|location=Sequence derived from alignment at Contig_218:98436..101639+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCATTTTCGACGAGCTGGGCGCGGCGCCGATTATCCTGGCACTGCTGTA
CCTGTACGTCATGGGAGTCGCCTCCAGCAAGCTGTCCAAGATGAGGAAGG
CATCCACAGGAGGGCTGAATACGGAGAAGCTCTTTGTGATGACGATGCTG
CTGGCTTGCGTCACTCGAGTGATGGGATTCGTTACCATAGGCGAGTGCGC
GCTCAACCTGCAGAGCATCCGCGTGGGCTACGACCCGCACCGCCACGACG
GCGGCGACAGCGGCGCCGACGACGACGACGACTACCGCCAGGACTCCGAT
CAGCGCTTCTACGATAAGTGCGTGCTCGTGCTCTTCGACTTCCCGGACTT
TGTCGCGCTGAGCGCGTACGCGCTGCTCGCCGTCGTCTGGGCGGAGGCCT
TCCTCGCGAGCCGCTCCCACTGGCTCTCCGCGCGGCGCTACCGCCAGGGC
TTCCTCATGGCGTACCTGGTCTTCAACGCGGCGCTCTACATGGCGCAGCT
GCTGCTGTACGGCGCGCTGTTTCTGCCATCGTCGCCCACGGGCTGGGCCG
CGCGCGCGCTGTACGCCGCGCTCACCACCGTCAACTTCGGCCTGCCGCTG
CTCCTGGCGGCGCTCTTCATGTACCTGACGGTCTCCTTCTCGGGTTTTCC
GTACCGCACGGAACGCGCGCTGCGCCGCCAGGCGCTCGCGGGCCGCGCGC
TGCTCATCTGGACGGCGGGCCGCGTCTGCTGGGGCGCCTTCGCGCTCACC
GCCGCGCTGCAGTACTCGCTCGCCGCAAGCAGCGCCGCGGAGAAGGCCGC
CATCTACTCCGTCCTCATCGTCGCGCTCTTCCTCGTGACGGAGCTCTGGC
CGTTCGCGGCGGCGCTCGACGACGACGTCCTCGCCGTCGTCGGCGAGGCC
GCCGCCGCGGCGACGGCG
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protein sequence of jgi.p|Trimin1|133551

>Trimin1|133551|gw1.218.9.1 ID=Trimin1|133551|gw1.218.9.1|Name=jgi.p|Trimin1|133551|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=306bp
IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTML
LACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSD
QRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQG
FLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPL
LLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALT
AALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGEA
AAAATA
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mRNA from alignment at Contig_218:98436..101639+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17655 ID=mRNA_17655|Name=jgi.p|Trimin1|133551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3204bp|location=Sequence derived from alignment at Contig_218:98436..101639+ (Tribonema minus UTEX_B_3156 )
ATCATTTTCGACGAGCTGGGCGCGGCGCCGATTATCCTGGCACTGCTGTA CCTGTACGTCATGGGAGTCGCCTCCAGCAAGCTGTCCAAGATGAGGAAGG CATCCACAGGAGGGCTGAATACGGAGAAGCTCTTTGTGATGACGATGCTG CTGGCTTGCGTCACTCGAGTGATGGGATTCGTTACCATAGGCGAGTGTCG ATGAGAACAGGCCATTTGCCAAGTTGAGACTGGCGCTGGTGTGAGCCAGG AGCATGTAGTTCATGCATGTACGTGCTGAGCATCGGTTGCGTAAGCAAGC ACGGCATTATTACTGTGCGGTATGCCGTCCGATAATGCTGTGCTTCACGG CTGGAAGGATCAGAGAGCTTGGCATCAGTGATGAAGCAACACAGCAGACC ACCTCTGCCTCGTCGTACTCCCAATCACGTGCCTGGGCACTAAAACAAAC AGGTACATGAATGCACGCTGGGCGCCACTTGCCACAAGAGCCATGCTGAT CTACTGCGTACATCAGTGCTTCTTCGATAGCATTGGCGGGGCGCTGCTGA GCGGCTGCTCGCCCCTGCTGCACGACAGGAACTGCCGCTTGGGGTTGGGG TTTAGGGGTAGGTCAGGGTTAAGGTTAGGGTGCAGCTTGAGAAGAGCATC TCCGCTGGCGCCGCACACCAAAACTGTGATCGCCACCGCACACACGCAAT GCAGGGTTTCGCAAGTTGCCGCAAATTACGTGACTTCAACATGCAAGGGG CAATCCGCAGCAGGATGCTGTGCTGGATTGTGTTTCATACTCCAAGTGTA TTATTACAGGTGATTCGGATAAGTCCGACTTGAGGGCGCTTCGTTGCTAC TGAATAATAGGTATACTTTGGGTCAGAGAGAGTACGTGGCCGCCAGCTGG CAGTTTCACCTTTTATCTTGCCGCTTGCGTATCGTCACCTGTTGTTGTGC AAGCTCACAACTAGGGTTGGCATCAGCATCAGGTCCGTTGCGACACACCA CATGCACTTCATGTGAGTGTTTGGTGCATCGCCAGTCACCCTGTTGTACC CCCCCCCCCCCGCCCCCCCCCCCCCTACTACCCCCAAGCACTGGGTGTCA GCCATCAACAGTGACTGCTGAGGCCAGGTAAAATGCATCAACGAAGTCAC AAGATTGTCAAGTACGATTCATGTACGTCACTTTCACTCAACAATGCGCT CATCATGAGACATAGATCCCTAACCTTACGGTACCGCCAAACCTTGGACC CTGCCCCCTACGCACCCACCCGCGCTTCCCCCGTGCCGCGCTTCACCGCC TCGCCCCCCCCCCCCCCCCCCCCCTGCAGTCCTCGTTGGCCACTTGACCA AGTCATCATCCCCAACCTGTCAGCCAGAAGCCGACCCCAGTTCGGTTGAG CACCTGATCAGATGTGACTGTGCCCCCCCCCCCCCCTGCCCCCCCCCCGC AGGCGCGCTCAACCTGCAGAGCATCCGCGTGGGCTACGACCCGCACCGCC ACGACGGCGGCGACAGCGGCGCCGACGACGACGACGACTACCGCCAGGAC TCCGATCAGCGCTTCTACGATAAGTGCGTGCTCGTGCTCTTCGACTTCCC GGACTTTGTCGCGCTGAGCGCGTACGCGCTGCTCGCCGTCGTCTGGGCGG AGGCCTTCCTCGCGAGCCGCTCCCACTGGCTCTCCGCGCGGCGCTACCGC CAGGGCTTCCTCATGGCGTACCTGGTCTTCAACGCGGCGCTCTACATGGC GCAGCTGCTGCTGTACGGCGCGCTGTTTCTGCCATCGTCGCCCACGGGCT GGGCCGCGCGCGCGCTGTACGCCGCGCTCACCACCGTCAACTTCGGCCTG CCGCTGCTCCTGGCGGCGCTCTTCATGTACCTGACGGTCTCCTTCTCGGG TTTTCCGTACCGCACGGAACGCGCGCTGCGCCGCCAGGTGCGCCGCGCGC GCTTGATCGTACTGAACACCCATACCTCGAACGCTGAGAAGCTTGGACAC AGGAGTCTTTTGACCACTGTGGATATGGTGGCACTGTTTGGCTCGTGGCC GATGGCTGCAGCAGCGGCGACCACCATTATTGGTGGAAAGCACTTGCGGC TCACCACTCCTTGTCACCTAGAGTTCTGCGATCTTTTATTTGTTTCCATC GCATCCATCGAGTCCGCTTTTGGCGGTGAAGTGGATCAGACAGCGATGGT TAAGGTCAGCCAGCAAGCCGACTCACTGGCGGCGACTCGGGCGCGGTGTC AGAGGCGCCGCCATCGCTCAGCGAGGCCCTTTTGGTTACGAGGGCCGCCG CCGCTATGCATCGGCATCTCACACTCTGGCCTCTTGCGATGCTGCGCGGC ACAACGTGCGCCGCCGCTGCCGCGCATGGCATCTGACACTCCGACTTCTC GCGTTGCTCAGCGGCGCTCAGTGAGGAAGTAAATGATACCTTAGAGATGA CTTTCGCCACGCATGCCGCTCGGGGACGGCAGCATGGGTGAAGGCCTGAT GCAGGAACTGCCACCATCGCGTGAGAGGGTGTTCACTCTCCACCAGCTCT GCGAAGCACACGCACACGCGCGCTCCAATACTTGTAGGCAAAGCCTATGG GCCTGCGGGCAAAGCTGCCATGTTACCGCGCTCCTGCGCGGCGCACGCTT CTTTGGCGCCACGCGGTCAAACAGTCGTGCTTAGGGTGAAGGTTAGGGTT GGGTTCTCGCATGTCGTCGGCAGCATTCCAGCGCCAACGCGCCGCTGTAC ATCGTCACATTCGCGGACGATGAAGCAACCCTTTTTGGACGATGCAACGA CCTTTTCGGGGCACCTTCTGTGATCATACGCGTTCATGGAGTAAAACTCT ATAGCACGTAGAAACCGCGCTTTGGCAACTGATCGATGCGCGCTACCTAG CTGTTGACATATATGATATACGCTTCGTGTCGCTCCCTCTCGCGCTGCCG CCGCCGCCGCCGCGCAGGCGCTCGCGGGCCGCGCGCTGCTCATCTGGACG GCGGGCCGCGTCTGCTGGGGCGCCTTCGCGCTCACCGCCGCGCTGCAGTA CTCGCTCGCCGCAAGCAGCGCCGCGGAGAAGGCCGCCATCTACTCCGTCC TCATCGTCGCGCTCTTCCTCGTGACGGAGCTCTGGCCGTTCGCGGCGGCG CTCGACGACGACGTCCTCGCCGTCGTCGGCGAGGCCGCCGCCGCGGCGAC GGCG
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Coding sequence (CDS) from alignment at Contig_218:98436..101639+

>mRNA_17655 ID=mRNA_17655|Name=jgi.p|Trimin1|133551|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=918bp|location=Sequence derived from alignment at Contig_218:98436..101639+ (Tribonema minus UTEX_B_3156 )
ATCATTTTCGACGAGCTGGGCGCGGCGCCGATTATCCTGGCACTGCTGTA
CCTGTACGTCATGGGAGTCGCCTCCAGCAAGCTGTCCAAGATGAGGAAGG
CATCCACAGGAGGGCTGAATACGGAGAAGCTCTTTGTGATGACGATGCTG
CTGGCTTGCGTCACTCGAGTGATGGGATTCGTTACCATAGGCGAGTGCGC
GCTCAACCTGCAGAGCATCCGCGTGGGCTACGACCCGCACCGCCACGACG
GCGGCGACAGCGGCGCCGACGACGACGACGACTACCGCCAGGACTCCGAT
CAGCGCTTCTACGATAAGTGCGTGCTCGTGCTCTTCGACTTCCCGGACTT
TGTCGCGCTGAGCGCGTACGCGCTGCTCGCCGTCGTCTGGGCGGAGGCCT
TCCTCGCGAGCCGCTCCCACTGGCTCTCCGCGCGGCGCTACCGCCAGGGC
TTCCTCATGGCGTACCTGGTCTTCAACGCGGCGCTCTACATGGCGCAGCT
GCTGCTGTACGGCGCGCTGTTTCTGCCATCGTCGCCCACGGGCTGGGCCG
CGCGCGCGCTGTACGCCGCGCTCACCACCGTCAACTTCGGCCTGCCGCTG
CTCCTGGCGGCGCTCTTCATGTACCTGACGGTCTCCTTCTCGGGTTTTCC
GTACCGCACGGAACGCGCGCTGCGCCGCCAGGCGCTCGCGGGCCGCGCGC
TGCTCATCTGGACGGCGGGCCGCGTCTGCTGGGGCGCCTTCGCGCTCACC
GCCGCGCTGCAGTACTCGCTCGCCGCAAGCAGCGCCGCGGAGAAGGCCGC
CATCTACTCCGTCCTCATCGTCGCGCTCTTCCTCGTGACGGAGCTCTGGC
CGTTCGCGGCGGCGCTCGACGACGACGTCCTCGCCGTCGTCGGCGAGGCC
GCCGCCGCGGCGACGGCG
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