mRNA_17655 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A835Z1P3_9STRA (DUF1084 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P3_9STRA) HSP 1 Score: 567 bits (1461), Expect = 1.460e-203 Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 1 Query: 1 IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGEAAAAATA 918 IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGEAAAAATA Sbjct: 1 IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGEAAAAATA 306
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: D7FRE0_ECTSI (DUF1084 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE0_ECTSI) HSP 1 Score: 252 bits (643), Expect = 2.450e-78 Identity = 148/295 (50.17%), Postives = 202/295 (68.47%), Query Frame = 1 Query: 1 IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYS-LAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVL 882 ++F +LGAAP+I++LLY A KL +M + L+T+KLF M++LL C+TR MGF+TIG ALN++S+ GGD G+ ++ D+D+RFY+K +LVLFD PDF+ +SAY+LLAVVWAEAFL SR HWLSAR Y++ L+ Y++FN+ALY QL+LY LFLPS LY +T+VN LPLLLA LF YLT +FSGFPY++E A+ R GR +++WTA RV WG LTA L++ L S+ + + +YS+L+V LFL TEL+P ALDD++L Sbjct: 4 VMFAQLGAAPLIMSLLYGATFLHALGKL-RMLHGKSRSLDTKKLFAMSVLLLCLTRTMGFMTIG--ALNMRSV----------GGD-GSSSRRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRVGRVVMLWTAARVVWGLSTLTAVLEFQRLVGSATSLREQVYSILVVTLFLTTELYPLLGALDDELL 284
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: W7TTU2_9STRA (DUF1084 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTU2_9STRA) HSP 1 Score: 218 bits (556), Expect = 4.620e-65 Identity = 131/302 (43.38%), Postives = 191/302 (63.25%), Query Frame = 1 Query: 1 IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGEAAA 906 +I D LG P ILALLYL + SS+L + +NT KLFV+++LL+C R + F+ +G A ++QSI + D S + QD D +FY+K +L+LF+ PDFV +SAY LLA+VWAEAF+ SRSHWLS +++R+ +L++YLVFNA LY+ QL+LY LFLP + ++ ++ L +NF LP++L LF YL++ F+GFPY++ RA + + + WT GR+ WG LT+ LQ L S A + +YSV++V LFL+TEL PF A+D +LA + A+A Sbjct: 2 LILDGLGVTPFILALLYLATTALISSRLRNLHTRHPE-MNTTKLFVLSVLLSCGMRCLSFIALG--AFSVQSIAIDNDASGRASSPSSSWSS---TQDPDTQFYEKALLILFNLPDFVFVSAYVLLALVWAEAFIQSRSHWLSIKQFRRMWLLSYLVFNACLYLGQLVLYTLLFLPHGNQDFLSKIIFLTLCVINFSLPIILLLLFFYLSIMFAGFPYKSRRAPAKLNKISKVMAWWTIGRIIWGIVVLTSILQGWL--SDAHKDRQVYSVVLVGLFLITELIPFFVAMDVSLLASLSTASA 295
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A7S1U079_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U079_9STRA) HSP 1 Score: 177 bits (448), Expect = 2.840e-49 Identity = 114/284 (40.14%), Postives = 166/284 (58.45%), Query Frame = 1 Query: 34 ILALLYLYVMGVASSKLSKMRKASTG-GLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVL 882 IL+ LY + S+L KM A TG L+T+KLFV+T+LL CV R + FV G +L +QSI G G D+DD +D D+ FY+K VLV+FD PD+ ++AY LL +V+AE FL +R HWL + R+ +++ YL N+ LY Q+ LY LF+P P + L+ L ++F LP+ +A + YLT FS FPYR++ A +R G + +WT GR WG FA+ +L + ++ A YS +++ LF+ TEL PF ALD ++L Sbjct: 15 ILSFLYASMTVYTFSRL-KMLHAITGQALDTQKLFVVTLLLTCVLRTLSFV--GLTSLAVQSIEYG-----------GDDNDDTGERDEDEEFYEKAVLVMFDLPDYTIVTAYLLLVIVYAETFLHARRHWLDPIQMRRRWVVWYLGANSVLYGVQITLYTLLFVPRVPQSLLIQLLFITLGAISFCLPIAVAIGYFYLTYRFSAFPYRSQHAAKRVKKVGLVMKVWTVGRFIWGCFAVFFSLSFVSTSNDTA-----YSTVLICLFVCTELIPFLLALDTEIL 279
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A7S1U7L3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7L3_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.360e-40 Identity = 107/298 (35.91%), Postives = 170/298 (57.05%), Query Frame = 1 Query: 4 IFDELGAAPIILALLY----LYVMGVASSKLSKMRKASTGGL-NTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVL 882 + D L AAP++LA+ Y LY++ SKL K K S L +T KL +M CV R + F+TI +N + +G+ + + RQ ++ F++K +LVLFD PD++ ++ + LL +VWAE FL SR+HWLS++ +R+ L+ YLVFNA +Y QL+LY LF+P+ T L+ ++ +NF +P+ + +YL F+ FPY+ R+ R ++ WT GRV W A++A ++ L S + + Y+V++VA+F +TEL PF+ AL+ D L Sbjct: 4 VLDGLRAAPMLLAIAYGCYGLYIL----SKLRKFLKYSGSKLLDTRKLLAASMFFVCVFRCLTFITIA--LVNRRGYALGFHGSSNPVATVVQEGPQKLRQ-ANLDFFEKSMLVLFDLPDYMIVTTFTLLVLVWAEVFLDSRAHWLSSKTFRRRALIGYLVFNATVYATQLVLYSLLFVPTISTKGLRVLLFCSVAVLNFFVPITFLGVAIYLYCQFAAFPYKGVRSRLALERTTRVVIWWTGGRVLWAMTAVSAGMRDWLTNWSGSSE--FYAVVLVAVFGLTELMPFSVALEPDFL 292
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A067CCW6_SAPPC (DUF1084 domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CCW6_SAPPC) HSP 1 Score: 139 bits (351), Expect = 1.580e-35 Identity = 94/302 (31.13%), Postives = 157/302 (51.99%), Query Frame = 1 Query: 16 LGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPT-------------GWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVL 882 L A LAL Y+ + ++ SKL R + T +L +MT+ L C+ R F T+ C L+ Q P DD + ++SD FY+K V VLF+ PD++ +SAY L+ ++WAE F +SR HW SA ++ + +++ YL+FN LY+ Q++LYG LFL ++ + + LP ++ +MYL+V+ SGFPY++ A + + GR L+W+ GR+ + L + ++ + ++ S+L+VALF++ E+ P + LD D+L Sbjct: 9 LAMASYFLALCYMLMTFISVSKLYATRHKNASMSRTTQLLLMTISLGCLFRTATFTTL--CFLDFQHTDASLSPLS---ARFQVPDDTPHAEESDLSFYNKVVAVLFNLPDYLFVSAYLLVVLLWAETFQSSRRHWFSADQFHRKWMVFYLIFNGGLYLTQVVLYGLLFLKEDGAIAGIFDNDAGTRLALIPSLIFYTVAAADLALPAIILGTWMYLSVTLSGFPYKSVHAKAKLSKVGRVALVWSLGRILYSVMILLTFTKGWF--NTEKDTVSMQSMLLVALFVLAEITPIYSLLDSDLL 303
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A7R9VVQ9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVQ9_9STRA) HSP 1 Score: 139 bits (351), Expect = 7.520e-35 Identity = 95/295 (32.20%), Postives = 161/295 (54.58%), Query Frame = 1 Query: 10 DELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVG 894 D L A ++ ++LY++ + +A+ KL+ + + S L+T+KL V+++ L C R+M F IG A+++ ++R Y D R D +Q+FYD V+FD P+ V +S + LL +VWAE FL SR H SA +++ +L Y++FNA LY Q++LY + LP + LYA T +NF +L+ L++YL++SFSGFP+R+ + +W+ RV WG+ L ++ ++ ++ + +V++ LFL E+ P LD + +VG Sbjct: 37 DFLTVALLLSSVLYMFCLVLATRKLAFLNRVSGRELSTKKLLVLSVGLVCAIRIMSF--IGVAAMDIANVRAHYSLKPTSTTDRNGSST--ARMDRNQKFYDAAFTVMFDLPNVVVVSTFVLLTLVWAECFLQSRFHTESAAKWQMRWLTGYMLFNALLYGTQIILYVLVILPVTAK-IVRTVLYALSTGINFAAVVLVLGLYIYLSLSFSGFPFRSIHLKESLRKISNVMALWSLSRVVWGSAMLVIYMK-NVELLQDSKTPVVSAVVLFFLFLFCEITPIVVMLDYSYMNMVG 325
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A7S2SVF8_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVF8_9STRA) HSP 1 Score: 137 bits (346), Expect = 8.170e-34 Identity = 94/261 (36.02%), Postives = 146/261 (55.94%), Query Frame = 1 Query: 115 LNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGE 897 ++T +LF +++ ACV R +V G L+ Q + + ++ A+DD D F + V VLFD PDF+ LSAY LL + WAE+ + SR HWLS R +++ ++YLV N LY+ QL+LYG +FL +S +++ L L+ +N+GLP L + ++Y T+ FSGFP+R+ + A+A R + +WT GR+ WG L+ AL S A + +L V + L++E PF ALD L V+ + Sbjct: 44 IDTVRLFALSVFGACVLRSASWV--GLACLSYQHVELPSGSTPLHIKETNAEDD-------DVAFVESAVFVLFDLPDFIVLSAYMLLGLAWAESMVTSRLHWLSDRVHQRTLRISYLVVNILLYLTQLVLYGLIFL-NSTDNTSSKLLDFILSGMNWGLPFLFTSFWIYCTIRFSGFPWRSPHHRAKFAIASRMMWVWTFGRLLWGLCTLSTALS-SFATLLGDADQRLRVLLFVVVVLLSEAVPFILALDSGFLHVLAD 293
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A482T4N9_9ARCH (DUF1084 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T4N9_9ARCH) HSP 1 Score: 131 bits (330), Expect = 1.590e-33 Identity = 80/215 (37.21%), Postives = 122/215 (56.74%), Query Frame = 1 Query: 4 IFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLLACVTRVMGF-----VTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTV 633 +F+ L I LA++YL ++ SKL ++ + GLNT KLFVM++LL C+ R M F +T+G L+S + D + DGGD +++ F+ K +VLFDFPDF +SAY LL +VWAE +L SR HWLS+ R++Q ++ +YL+FN LY Q LY LF+P+ +Y L N LP+ +++Y+++ Sbjct: 4 VFEGLLGGTITLAVIYLVLIIYVYSKLLWLQSNTPQGLNTRKLFVMSILLTCLLRFMSFASMTLLTLGSVHFQLESGGIKTDDNDDDGGDG-----------TNKEFFAKASVVLFDFPDFCFVSAYVLLLIVWAETYLKSRRHWLSSVRFQQVWIWSYLIFNLVLYTTQTALYSLLFIPTIDEYVQTNLIYLTLAGFNLFLPICWIIVYLYMSI 207
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Match: A0A7S0PTK0_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PTK0_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.560e-32 Identity = 96/297 (32.32%), Postives = 157/297 (52.86%), Query Frame = 1 Query: 10 DELGAAPIILALLYLYVMGVASSKLS--KMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRRQALAGRALLIWTAGRVCWGAFALTAALQYSLAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVG 894 D L A ++ ++LY + + +A K S K+R G T+KL V+++ L C R+M +G A+N+ ++R Y D + DQ+FYDK + VLFD P+ + +S YALL +VWAE FL SR H S +++ L Y+VFNA LY QL+LY +F S +YAA+T +NF L++ ++YL+V+FSGFP+R+++ + R + +W+ R+ WG L + Y++ + ++++ LF E+ P A LD ++ +G Sbjct: 12 DMLTVALLMASILYTFCLILAQRKFSVLKLRHREMG---TKKLLVLSVGLVCAVRIMTI--LGVVAMNIANVRAHYSLQPTDLYYVSTT-----TEAKDQKFYDKAMTVLFDLPNCIVVSTYALLTLVWAECFLESRFHTESTLAWKRSGLKCYMVFNALLYATQLVLYTCIFFVPSVKS-VRTIIYAAITGINFTAVLIVLIFYLYLSVNFSGFPFRSQQLRESYSKLSRVMGLWSLTRIVWGIATLLVFI-YNIELLQDSHTPVWSFLVLLLLFFGCEIIPIIAMLDRSYISFIG 296 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133551 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17655 ID=mRNA_17655|Name=jgi.p|Trimin1|133551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=918bp|location=Sequence derived from alignment at Contig_218:98436..101639+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATCATTTTCGACGAGCTGGGCGCGGCGCCGATTATCCTGGCACTGCTGTAback to top protein sequence of jgi.p|Trimin1|133551 >Trimin1|133551|gw1.218.9.1 ID=Trimin1|133551|gw1.218.9.1|Name=jgi.p|Trimin1|133551|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=306bp IIFDELGAAPIILALLYLYVMGVASSKLSKMRKASTGGLNTEKLFVMTMLback to top mRNA from alignment at Contig_218:98436..101639+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17655 ID=mRNA_17655|Name=jgi.p|Trimin1|133551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3204bp|location=Sequence derived from alignment at Contig_218:98436..101639+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_218:98436..101639+ >mRNA_17655 ID=mRNA_17655|Name=jgi.p|Trimin1|133551|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=918bp|location=Sequence derived from alignment at Contig_218:98436..101639+ (Tribonema minus UTEX_B_3156 )back to top |