mRNA_17645 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132535
Unique NamemRNA_17645
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835Z5J4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J4_9STRA)

HSP 1 Score: 483 bits (1242), Expect = 1.720e-172
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
Query:    1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 711
            RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ
Sbjct:    1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 237          
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YZW4_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW4_9STRA)

HSP 1 Score: 469 bits (1208), Expect = 7.620e-165
Identity = 227/237 (95.78%), Postives = 234/237 (98.73%), Query Frame = 1
Query:    1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 711
            RIPAIVTLVGHTGSGKSYLATALIQ+MQREGTITHLFIISPTANSNTLY N++K DDK+YSDIGPAVFKSLEEIVASCEA+ADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARG+MPVVPKRPSFCLFCDDCQGSAIFSRGS+NSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWV FKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ
Sbjct:  153 RIPAIVTLVGHTGSGKSYLATALIQLMQREGTITHLFIISPTANSNTLYQNIVKTDDKLYSDIGPAVFKSLEEIVASCEAIADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGFMPVVPKRPSFCLFCDDCQGSAIFSRGSRNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVFFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 389          
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835ZBD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD4_9STRA)

HSP 1 Score: 346 bits (888), Expect = 3.160e-108
Identity = 165/216 (76.39%), Postives = 192/216 (88.89%), Query Frame = 1
Query:   67 LIQMMQR-EGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 711
            ++Q M+R + T  H     PTANSNTLY N+LKPDDK+YSDIGP VFKSL+EIVA+CEAV D YRKDLEY IA AKYT+GEPVTYFDEALLE RG+MPVVPKRPSFCLFCDDCQ SAIFSRG +N+FPN VLRSRHVAGGLGLS+I+AAQT+RSGVPRALRLNSTH++LFK+ +R+E+++MYEEVSGFCSKGEFER FN++T EP+GY+FADL RQ
Sbjct:   39 VVQDMKRAKFTAAHTINFVPTANSNTLYQNILKPDDKIYSDIGPNVFKSLDEIVAACEAVGDAYRKDLEYAIAHAKYTNGEPVTYFDEALLEQRGFMPVVPKRPSFCLFCDDCQNSAIFSRGGRNTFPNCVLRSRHVAGGLGLSVILAAQTMRSGVPRALRLNSTHFILFKTHSRVELDEMYEEVSGFCSKGEFERQFNYFTAEPYGYMFADLIRQ 254          
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835Z465_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z465_9STRA)

HSP 1 Score: 326 bits (835), Expect = 1.690e-100
Identity = 159/192 (82.81%), Postives = 178/192 (92.71%), Query Frame = 1
Query:   40 SGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEE 615
            SGKSYLATALI MMQREGTITHLFIISPTANSNTLYSN+LKPDDKVYSDIGP VFKSL+EIVA+CEAV D YRKDLEY IA AKYT+GE VTYFDEALLE RG+MPVVPKRPSFCLFCD CQGSAIFSRG +N+FPN VLRSRHVAGG GLS+I+AAQT+RSGVPRALRL+STH++LF + +R+E+++MYEE
Sbjct:  110 SGKSYLATALIAMMQREGTITHLFIISPTANSNTLYSNILKPDDKVYSDIGPNVFKSLDEIVAACEAVGDAYRKDLEYAIAHAKYTNGELVTYFDEALLEQRGFMPVVPKRPSFCLFCDACQGSAIFSRGGRNTFPNCVLRSRHVAGGQGLSVILAAQTMRSGVPRALRLDSTHFILFNTHSRVELDEMYEE 301          
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YP98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP98_9STRA)

HSP 1 Score: 258 bits (658), Expect = 3.870e-83
Identity = 126/235 (53.62%), Postives = 168/235 (71.49%), Query Frame = 1
Query:    1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPD-DKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADL 702
            R+P I T VG TGSGK++   ALI++M+RE +ITHLFIISPTA+SNT+Y  +  P+ D+++ D+G  VF +L +I  +   +AD Y   L Y +A  ++  GE V+  DE LLE  GY  +  +RPSF L  DD Q SAIFSR   N FPNLVLRSRH A GLG SI MAAQT+++GVPR+LR NSTH+++FK+ +  E++ +YEEV+GF S+ EFERL+  YT+  HGYLFAD+
Sbjct:   25 RVPTICTAVGGTGSGKTFCLVALIKLMRREKSITHLFIISPTAHSNTIYRAIFDPETDQLFDDLGVKVFDTLRQIQDTMNGIADGYETQLRYALAFERFVRGEDVSTTDEQLLEEGGYRKIAVRRPSFALLIDDAQNSAIFSRHKNNGFPNLVLRSRHCARGLGCSIFMAAQTMKNGVPRSLRTNSTHFMMFKTCSASEMDSLYEEVAGFVSRPEFERLYALYTHGKHGYLFADM 259          
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YS37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS37_9STRA)

HSP 1 Score: 240 bits (612), Expect = 3.500e-76
Identity = 117/240 (48.75%), Postives = 167/240 (69.58%), Query Frame = 1
Query:    1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPD--DKVYSDIG-PAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 711
            ++P I+TL     +GKSYLA ALI +MQREG+ITH +I+SPTA+SN++Y N++  +  D+V+ D+  PAV+ +L+ I    EA+   Y+ DL+Y I    YTSG  V   DE LL++RGYMP  P++PS+C+  DD Q S + SR + N   N  LR RH+A   G+S ++ +QT++ G+P+A+R N+THW  FK+LN+ E+E+ Y+EVSGFC + EFERL   YT +  GYLFAD+PRQ
Sbjct:   24 QLPFILTLSAKCNAGKSYLAVALISLMQREGSITHTWILSPTASSNSIYRNIVSEEHMDRVHDDLSAPAVWNTLKAIQVEMEAITAQYQADLKYAIVHHLYTSGAAVNAMDEHLLDSRGYMPCAPRQPSYCVLVDDAQASPLLSRATANPMLNACLRHRHMAR-FGVSFVLVSQTVK-GLPKAIRTNTTHWAFFKTLNKKEIEECYDEVSGFCEQHEFERLLRLYTLQKFGYLFADIPRQ 261          
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YL54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL54_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.670e-74
Identity = 118/235 (50.21%), Postives = 156/235 (66.38%), Query Frame = 1
Query:    1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFK-SLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADL 702
            R+P +   VGHTG+GKS+    LI+ MQ E TIT LFIISPTA SNT+Y N+++  D+VY D+ P ++ SLEEI + C++ A VY  +L+   A  +Y +G P+ Y D  LLE  G+  ++PKRP+F +F DDC  SA+FS   KN + N  LR RH   GLG S+ M +QT+RSGVP+ALR N+TH+     S+NR EVE M+E VS F S  +FER    +T E HGYLF DL
Sbjct:   25 RVPCLCIAVGHTGAGKSWKIVELIKRMQMERTITRLFIISPTAASNTIYKNIVREGDRVYDDLSPKIYASLEEIESVCKSEAYVYAHELKCAAAYLRYANGLPLDYPDTQLLEQIGWRQMIPKRPAFAVFADDCSHSALFSTSRKNPWSNFCLRCRHAGNGLGDSVFMVSQTMRSGVPKALRENATHFFYVGGSMNRKEVESMWETVSSFVSFDDFERKLRLFTLENHGYLFCDL 259          
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835ZKI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI0_9STRA)

HSP 1 Score: 216 bits (551), Expect = 3.610e-67
Identity = 107/234 (45.73%), Postives = 153/234 (65.38%), Query Frame = 1
Query:    1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADL 702
            R+P I   +  TG GKS+    LI+MM+ EG+I  +F+ISPTA+SN++Y  +L P+DK + D+    F+ ++E+V  CEA A  YR DLEY IA  K+ SGE +++ +E LLE  G+  + PKRPS  L  DD QGS + S+ ++N   NLVL+SRH+  GLGLSI    QT+ +G P+ +RLN THW ++K+ +  E + +YE + G  S+ EF+R  + YT  PH YLF DL
Sbjct:   11 RVPTIFCALASTGGGKSFTTINLIRMMRAEGSINKVFLISPTADSNSIYKAILTPEDKTW-DLDKNAFQHIQEVVQECEADAAKYRHDLEYEIAYKKFVSGETISHVEENLLETGGFREIKPKRPSPALVLDDIQGSILMSQSARNPLVNLVLKSRHIGEGLGLSIFFMVQTL-TGCPKPIRLNVTHWAIWKTHSTREQKLIYESLGGMMSEEEFQRKLHLYTLAPHSYLFVDL 242          
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YSD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD5_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.130e-59
Identity = 102/228 (44.74%), Postives = 152/228 (66.67%), Query Frame = 1
Query:   16 VTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPD--DKVYSDIG-PAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYL 690
            +  V    +GKSYLA ALI +MQREG+ITH +++SPTA+SN +Y N++  +  D+V+ D+  PAV+ +L+ I    EA+   Y  DL Y  A  K+TSG  V + DE LL++RG+MP  P+ PS+C+  DD Q S + SR   N F N VLR R +A   G+S ++ +QT++ G+ +++R N++HW  FK+LN+ E+E+ Y+EVSGFC +  FE+L   YT EP+G +
Sbjct:  131 INFVAKVNAGKSYLAVALISLMQREGSITHTWVLSPTASSNQIYRNIVTDEHMDRVHDDLSAPAVWNTLKAIQGEMEAITAQYEADLRYATAHHKFTSGAAVNFVDERLLDSRGFMPCTPRTPSYCILVDDAQASPLLSRAKANPFLNAVLRHRRMAR-FGVSFVLVSQTVK-GLAKSIRTNTSHWAFFKTLNKREIEECYDEVSGFCEQEHFEKLLRLYTLEPYGQV 356          
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YYT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT5_9STRA)

HSP 1 Score: 194 bits (494), Expect = 5.900e-57
Identity = 105/237 (44.30%), Postives = 150/237 (63.29%), Query Frame = 1
Query:    1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPD-DKVYSDIG-PAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYT-NEPHGYLFADL 702
            R+P I   VG TGSGK+YL  +L+++++REGT+  ++++SPT  SN LY +V++   D V++    P ++K LE I    +A AD +R ++EY IA  K+T+G+ +   +  LLE  G+  +VP+RP   L  DD QGS +FS   +N    LVLR RHV GG+GLSI + AQT R GVPR+LR N TH  L+ + N  E++ +Y E  GF S+ EFERLF  YT    H ++  DL
Sbjct:  139 RLPTICGFVGSTGSGKTYLCLSLLKLLRREGTLDTVYLVSPTGASNVLYKSVIREGKDHVFTKPNSPQIWKDLEWIEGDVQAQADRWRDEMEYDIAHRKHTAGQTLNPHETNLLERFGFRKIVPRRPCPALVIDDAQGSLLFSPSPRNYLSQLVLRCRHVGGGVGLSIFLVAQTSR-GVPRSLRCNFTHLFLYSTHNAKELDVLYHESGGFVSREEFERLFRLYTATSRHAFMKVDL 374          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835Z5J4_9STRA1.720e-172100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YZW4_9STRA7.620e-16595.78AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835ZBD4_9STRA3.160e-10876.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z465_9STRA1.690e-10082.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YP98_9STRA3.870e-8353.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YS37_9STRA3.500e-7648.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YL54_9STRA1.670e-7450.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZKI0_9STRA3.610e-6745.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSD5_9STRA1.130e-5944.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYT5_9STRA5.900e-5744.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_218contigContig_218:18170..18880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132535|gw1.218.7.1
Hectar predicted targeting categoryother localisation
TranscriptId132857
TrackFilteredModels1
ProteinId132535
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132535gene_17645Tribonema minus UTEX_B_3156 geneContig_218 18170..18880 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17645_1exon_17645_1Tribonema minus UTEX_B_3156 exonContig_218 18170..18880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17645CDS_17645Tribonema minus UTEX_B_3156 CDSContig_218 18170..18880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132535Trimin1|132535|gw1.218.7.1Tribonema minus UTEX_B_3156 polypeptideContig_218 18170..18880 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17645 ID=mRNA_17645|Name=jgi.p|Trimin1|132535|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_218:18170..18880- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCATCCCCGCCATCGTCACTCTCGTGGGCCACACGGGGAGCGGCAAGAG
CTACCTCGCCACTGCTCTCATTCAGATGATGCAGCGCGAGGGAACCATCA
CACACCTTTTCATCATCTCGCCCACTGCCAACTCGAACACGCTGTACAGC
AACGTTCTCAAACCCGACGACAAGGTGTACTCCGACATCGGCCCCGCCGT
CTTCAAGTCCCTCGAGGAGATCGTCGCCTCGTGCGAGGCAGTCGCGGACG
TATACAGGAAGGATTTGGAGTACTGCATCGCTCTGGCCAAGTACACGAGC
GGGGAGCCCGTAACGTACTTCGACGAGGCGCTGCTGGAGGCACGGGGCTA
CATGCCCGTGGTCCCCAAACGTCCCAGTTTCTGCTTGTTTTGTGATGATT
GCCAGGGCAGCGCCATCTTCAGCAGGGGCAGTAAGAACTCGTTCCCCAAC
CTCGTCCTCCGAAGCAGACACGTCGCCGGCGGCTTGGGGCTGAGCATCAT
CATGGCGGCGCAGACGATCCGATCAGGGGTGCCGCGCGCGCTCCGTCTCA
ATTCCACCCACTGGGTTCTGTTCAAGTCCTTGAACCGCATGGAAGTGGAG
CAGATGTACGAGGAAGTCAGCGGTTTCTGCTCCAAGGGCGAGTTTGAACG
ACTCTTCAACTGGTACACGAATGAGCCCCACGGCTATCTTTTCGCCGATC
TCCCGCGGCAA
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protein sequence of jgi.p|Trimin1|132535

>Trimin1|132535|gw1.218.7.1 ID=Trimin1|132535|gw1.218.7.1|Name=jgi.p|Trimin1|132535|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=237bp
RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYS
NVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTS
GEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPN
LVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVE
QMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ
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mRNA from alignment at Contig_218:18170..18880-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17645 ID=mRNA_17645|Name=jgi.p|Trimin1|132535|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_218:18170..18880- (Tribonema minus UTEX_B_3156 )
CGCATCCCCGCCATCGTCACTCTCGTGGGCCACACGGGGAGCGGCAAGAG CTACCTCGCCACTGCTCTCATTCAGATGATGCAGCGCGAGGGAACCATCA CACACCTTTTCATCATCTCGCCCACTGCCAACTCGAACACGCTGTACAGC AACGTTCTCAAACCCGACGACAAGGTGTACTCCGACATCGGCCCCGCCGT CTTCAAGTCCCTCGAGGAGATCGTCGCCTCGTGCGAGGCAGTCGCGGACG TATACAGGAAGGATTTGGAGTACTGCATCGCTCTGGCCAAGTACACGAGC GGGGAGCCCGTAACGTACTTCGACGAGGCGCTGCTGGAGGCACGGGGCTA CATGCCCGTGGTCCCCAAACGTCCCAGTTTCTGCTTGTTTTGTGATGATT GCCAGGGCAGCGCCATCTTCAGCAGGGGCAGTAAGAACTCGTTCCCCAAC CTCGTCCTCCGAAGCAGACACGTCGCCGGCGGCTTGGGGCTGAGCATCAT CATGGCGGCGCAGACGATCCGATCAGGGGTGCCGCGCGCGCTCCGTCTCA ATTCCACCCACTGGGTTCTGTTCAAGTCCTTGAACCGCATGGAAGTGGAG CAGATGTACGAGGAAGTCAGCGGTTTCTGCTCCAAGGGCGAGTTTGAACG ACTCTTCAACTGGTACACGAATGAGCCCCACGGCTATCTTTTCGCCGATC TCCCGCGGCAA
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Coding sequence (CDS) from alignment at Contig_218:18170..18880-

>mRNA_17645 ID=mRNA_17645|Name=jgi.p|Trimin1|132535|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=711bp|location=Sequence derived from alignment at Contig_218:18170..18880- (Tribonema minus UTEX_B_3156 )
CGCATCCCCGCCATCGTCACTCTCGTGGGCCACACGGGGAGCGGCAAGAG
CTACCTCGCCACTGCTCTCATTCAGATGATGCAGCGCGAGGGAACCATCA
CACACCTTTTCATCATCTCGCCCACTGCCAACTCGAACACGCTGTACAGC
AACGTTCTCAAACCCGACGACAAGGTGTACTCCGACATCGGCCCCGCCGT
CTTCAAGTCCCTCGAGGAGATCGTCGCCTCGTGCGAGGCAGTCGCGGACG
TATACAGGAAGGATTTGGAGTACTGCATCGCTCTGGCCAAGTACACGAGC
GGGGAGCCCGTAACGTACTTCGACGAGGCGCTGCTGGAGGCACGGGGCTA
CATGCCCGTGGTCCCCAAACGTCCCAGTTTCTGCTTGTTTTGTGATGATT
GCCAGGGCAGCGCCATCTTCAGCAGGGGCAGTAAGAACTCGTTCCCCAAC
CTCGTCCTCCGAAGCAGACACGTCGCCGGCGGCTTGGGGCTGAGCATCAT
CATGGCGGCGCAGACGATCCGATCAGGGGTGCCGCGCGCGCTCCGTCTCA
ATTCCACCCACTGGGTTCTGTTCAAGTCCTTGAACCGCATGGAAGTGGAG
CAGATGTACGAGGAAGTCAGCGGTTTCTGCTCCAAGGGCGAGTTTGAACG
ACTCTTCAACTGGTACACGAATGAGCCCCACGGCTATCTTTTCGCCGATC
TCCCGCGGCAA
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