mRNA_17645 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835Z5J4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J4_9STRA) HSP 1 Score: 483 bits (1242), Expect = 1.720e-172 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1 Query: 1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 711 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ Sbjct: 1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 237
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YZW4_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW4_9STRA) HSP 1 Score: 469 bits (1208), Expect = 7.620e-165 Identity = 227/237 (95.78%), Postives = 234/237 (98.73%), Query Frame = 1 Query: 1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 711 RIPAIVTLVGHTGSGKSYLATALIQ+MQREGTITHLFIISPTANSNTLY N++K DDK+YSDIGPAVFKSLEEIVASCEA+ADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARG+MPVVPKRPSFCLFCDDCQGSAIFSRGS+NSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWV FKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ Sbjct: 153 RIPAIVTLVGHTGSGKSYLATALIQLMQREGTITHLFIISPTANSNTLYQNIVKTDDKLYSDIGPAVFKSLEEIVASCEAIADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGFMPVVPKRPSFCLFCDDCQGSAIFSRGSRNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVFFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 389
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835ZBD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD4_9STRA) HSP 1 Score: 346 bits (888), Expect = 3.160e-108 Identity = 165/216 (76.39%), Postives = 192/216 (88.89%), Query Frame = 1 Query: 67 LIQMMQR-EGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 711 ++Q M+R + T H PTANSNTLY N+LKPDDK+YSDIGP VFKSL+EIVA+CEAV D YRKDLEY IA AKYT+GEPVTYFDEALLE RG+MPVVPKRPSFCLFCDDCQ SAIFSRG +N+FPN VLRSRHVAGGLGLS+I+AAQT+RSGVPRALRLNSTH++LFK+ +R+E+++MYEEVSGFCSKGEFER FN++T EP+GY+FADL RQ Sbjct: 39 VVQDMKRAKFTAAHTINFVPTANSNTLYQNILKPDDKIYSDIGPNVFKSLDEIVAACEAVGDAYRKDLEYAIAHAKYTNGEPVTYFDEALLEQRGFMPVVPKRPSFCLFCDDCQNSAIFSRGGRNTFPNCVLRSRHVAGGLGLSVILAAQTMRSGVPRALRLNSTHFILFKTHSRVELDEMYEEVSGFCSKGEFERQFNYFTAEPYGYMFADLIRQ 254
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835Z465_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z465_9STRA) HSP 1 Score: 326 bits (835), Expect = 1.690e-100 Identity = 159/192 (82.81%), Postives = 178/192 (92.71%), Query Frame = 1 Query: 40 SGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEE 615 SGKSYLATALI MMQREGTITHLFIISPTANSNTLYSN+LKPDDKVYSDIGP VFKSL+EIVA+CEAV D YRKDLEY IA AKYT+GE VTYFDEALLE RG+MPVVPKRPSFCLFCD CQGSAIFSRG +N+FPN VLRSRHVAGG GLS+I+AAQT+RSGVPRALRL+STH++LF + +R+E+++MYEE Sbjct: 110 SGKSYLATALIAMMQREGTITHLFIISPTANSNTLYSNILKPDDKVYSDIGPNVFKSLDEIVAACEAVGDAYRKDLEYAIAHAKYTNGELVTYFDEALLEQRGFMPVVPKRPSFCLFCDACQGSAIFSRGGRNTFPNCVLRSRHVAGGQGLSVILAAQTMRSGVPRALRLDSTHFILFNTHSRVELDEMYEE 301
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YP98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP98_9STRA) HSP 1 Score: 258 bits (658), Expect = 3.870e-83 Identity = 126/235 (53.62%), Postives = 168/235 (71.49%), Query Frame = 1 Query: 1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPD-DKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADL 702 R+P I T VG TGSGK++ ALI++M+RE +ITHLFIISPTA+SNT+Y + P+ D+++ D+G VF +L +I + +AD Y L Y +A ++ GE V+ DE LLE GY + +RPSF L DD Q SAIFSR N FPNLVLRSRH A GLG SI MAAQT+++GVPR+LR NSTH+++FK+ + E++ +YEEV+GF S+ EFERL+ YT+ HGYLFAD+ Sbjct: 25 RVPTICTAVGGTGSGKTFCLVALIKLMRREKSITHLFIISPTAHSNTIYRAIFDPETDQLFDDLGVKVFDTLRQIQDTMNGIADGYETQLRYALAFERFVRGEDVSTTDEQLLEEGGYRKIAVRRPSFALLIDDAQNSAIFSRHKNNGFPNLVLRSRHCARGLGCSIFMAAQTMKNGVPRSLRTNSTHFMMFKTCSASEMDSLYEEVAGFVSRPEFERLYALYTHGKHGYLFADM 259
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YS37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS37_9STRA) HSP 1 Score: 240 bits (612), Expect = 3.500e-76 Identity = 117/240 (48.75%), Postives = 167/240 (69.58%), Query Frame = 1 Query: 1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPD--DKVYSDIG-PAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADLPRQ 711 ++P I+TL +GKSYLA ALI +MQREG+ITH +I+SPTA+SN++Y N++ + D+V+ D+ PAV+ +L+ I EA+ Y+ DL+Y I YTSG V DE LL++RGYMP P++PS+C+ DD Q S + SR + N N LR RH+A G+S ++ +QT++ G+P+A+R N+THW FK+LN+ E+E+ Y+EVSGFC + EFERL YT + GYLFAD+PRQ Sbjct: 24 QLPFILTLSAKCNAGKSYLAVALISLMQREGSITHTWILSPTASSNSIYRNIVSEEHMDRVHDDLSAPAVWNTLKAIQVEMEAITAQYQADLKYAIVHHLYTSGAAVNAMDEHLLDSRGYMPCAPRQPSYCVLVDDAQASPLLSRATANPMLNACLRHRHMAR-FGVSFVLVSQTVK-GLPKAIRTNTTHWAFFKTLNKKEIEECYDEVSGFCEQHEFERLLRLYTLQKFGYLFADIPRQ 261
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YL54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL54_9STRA) HSP 1 Score: 236 bits (601), Expect = 1.670e-74 Identity = 118/235 (50.21%), Postives = 156/235 (66.38%), Query Frame = 1 Query: 1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFK-SLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADL 702 R+P + VGHTG+GKS+ LI+ MQ E TIT LFIISPTA SNT+Y N+++ D+VY D+ P ++ SLEEI + C++ A VY +L+ A +Y +G P+ Y D LLE G+ ++PKRP+F +F DDC SA+FS KN + N LR RH GLG S+ M +QT+RSGVP+ALR N+TH+ S+NR EVE M+E VS F S +FER +T E HGYLF DL Sbjct: 25 RVPCLCIAVGHTGAGKSWKIVELIKRMQMERTITRLFIISPTAASNTIYKNIVREGDRVYDDLSPKIYASLEEIESVCKSEAYVYAHELKCAAAYLRYANGLPLDYPDTQLLEQIGWRQMIPKRPAFAVFADDCSHSALFSTSRKNPWSNFCLRCRHAGNGLGDSVFMVSQTMRSGVPKALRENATHFFYVGGSMNRKEVESMWETVSSFVSFDDFERKLRLFTLENHGYLFCDL 259
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835ZKI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI0_9STRA) HSP 1 Score: 216 bits (551), Expect = 3.610e-67 Identity = 107/234 (45.73%), Postives = 153/234 (65.38%), Query Frame = 1 Query: 1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYLFADL 702 R+P I + TG GKS+ LI+MM+ EG+I +F+ISPTA+SN++Y +L P+DK + D+ F+ ++E+V CEA A YR DLEY IA K+ SGE +++ +E LLE G+ + PKRPS L DD QGS + S+ ++N NLVL+SRH+ GLGLSI QT+ +G P+ +RLN THW ++K+ + E + +YE + G S+ EF+R + YT PH YLF DL Sbjct: 11 RVPTIFCALASTGGGKSFTTINLIRMMRAEGSINKVFLISPTADSNSIYKAILTPEDKTW-DLDKNAFQHIQEVVQECEADAAKYRHDLEYEIAYKKFVSGETISHVEENLLETGGFREIKPKRPSPALVLDDIQGSILMSQSARNPLVNLVLKSRHIGEGLGLSIFFMVQTL-TGCPKPIRLNVTHWAIWKTHSTREQKLIYESLGGMMSEEEFQRKLHLYTLAPHSYLFVDL 242
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YSD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD5_9STRA) HSP 1 Score: 213 bits (541), Expect = 1.130e-59 Identity = 102/228 (44.74%), Postives = 152/228 (66.67%), Query Frame = 1 Query: 16 VTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPD--DKVYSDIG-PAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYTNEPHGYL 690 + V +GKSYLA ALI +MQREG+ITH +++SPTA+SN +Y N++ + D+V+ D+ PAV+ +L+ I EA+ Y DL Y A K+TSG V + DE LL++RG+MP P+ PS+C+ DD Q S + SR N F N VLR R +A G+S ++ +QT++ G+ +++R N++HW FK+LN+ E+E+ Y+EVSGFC + FE+L YT EP+G + Sbjct: 131 INFVAKVNAGKSYLAVALISLMQREGSITHTWVLSPTASSNQIYRNIVTDEHMDRVHDDLSAPAVWNTLKAIQGEMEAITAQYEADLRYATAHHKFTSGAAVNFVDERLLDSRGFMPCTPRTPSYCILVDDAQASPLLSRAKANPFLNAVLRHRRMAR-FGVSFVLVSQTVK-GLAKSIRTNTSHWAFFKTLNKREIEECYDEVSGFCEQEHFEKLLRLYTLEPYGQV 356
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Match: A0A835YYT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT5_9STRA) HSP 1 Score: 194 bits (494), Expect = 5.900e-57 Identity = 105/237 (44.30%), Postives = 150/237 (63.29%), Query Frame = 1 Query: 1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPD-DKVYSDIG-PAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSRHVAGGLGLSIIMAAQTIRSGVPRALRLNSTHWVLFKSLNRMEVEQMYEEVSGFCSKGEFERLFNWYT-NEPHGYLFADL 702 R+P I VG TGSGK+YL +L+++++REGT+ ++++SPT SN LY +V++ D V++ P ++K LE I +A AD +R ++EY IA K+T+G+ + + LLE G+ +VP+RP L DD QGS +FS +N LVLR RHV GG+GLSI + AQT R GVPR+LR N TH L+ + N E++ +Y E GF S+ EFERLF YT H ++ DL Sbjct: 139 RLPTICGFVGSTGSGKTYLCLSLLKLLRREGTLDTVYLVSPTGASNVLYKSVIREGKDHVFTKPNSPQIWKDLEWIEGDVQAQADRWRDEMEYDIAHRKHTAGQTLNPHETNLLERFGFRKIVPRRPCPALVIDDAQGSLLFSPSPRNYLSQLVLRCRHVGGGVGLSIFLVAQTSR-GVPRSLRCNFTHLFLYSTHNAKELDVLYHESGGFVSREEFERLFRLYTATSRHAFMKVDL 374 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132535 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17645 ID=mRNA_17645|Name=jgi.p|Trimin1|132535|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_218:18170..18880- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCATCCCCGCCATCGTCACTCTCGTGGGCCACACGGGGAGCGGCAAGAGback to top protein sequence of jgi.p|Trimin1|132535 >Trimin1|132535|gw1.218.7.1 ID=Trimin1|132535|gw1.218.7.1|Name=jgi.p|Trimin1|132535|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=237bp RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSback to top mRNA from alignment at Contig_218:18170..18880- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17645 ID=mRNA_17645|Name=jgi.p|Trimin1|132535|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_218:18170..18880- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_218:18170..18880- >mRNA_17645 ID=mRNA_17645|Name=jgi.p|Trimin1|132535|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=711bp|location=Sequence derived from alignment at Contig_218:18170..18880- (Tribonema minus UTEX_B_3156 )back to top |