mRNA_17595 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Match: A0A835Z2J1_9STRA (Vesicle transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J1_9STRA) HSP 1 Score: 395 bits (1015), Expect = 3.440e-138 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1
Query: 1 MPDLASVSSFIEDRRASASGAYESVRVSTRRLLGQEEAPLKTRAEELEEYVCSFCPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAPRMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGACRSGRCCGGDSV 600
MPDLASVSSFIEDRRASASGAYESVRVSTRRLLGQEEAPLKTRAEELEEYVCSFCPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAPRMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGACRSGRCCGGDSV
Sbjct: 1 MPDLASVSSFIEDRRASASGAYESVRVSTRRLLGQEEAPLKTRAEELEEYVCSFCPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAPRMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGACRSGRCCGGDSV 200
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Match: D8LG13_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG13_ECTSI) HSP 1 Score: 195 bits (496), Expect = 1.390e-59 Identity = 94/169 (55.62%), Postives = 127/169 (75.15%), Query Frame = 1
Query: 61 AYESVRVSTRRLLGQEEAPLKTRAEELEEYVCSFCPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAP--RMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAG 561
A+ES++ S+ RLLG E K+ +E+EE VCS CPSL+++ RLIG+G CL +GF LTFG+LFR+ +L+ GNP PFV+ +S+G+ ++IC+SFFL GPW QIKKMF P R VAT +Y+ TL T VAL+P +P R LL+ LVV QF+S++WY LSY+PFAR + AG
Sbjct: 4 AFESMKASSMRLLGGEPEE-KSTLQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYASVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAG 171
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Match: F0YE90_AURAN (Vesicle transport protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE90_AURAN) HSP 1 Score: 169 bits (427), Expect = 3.260e-49 Identity = 86/169 (50.89%), Postives = 113/169 (66.86%), Query Frame = 1
Query: 82 STRRLLGQEEAPLKTRAEELEEYVCSFCPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAP-RMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGACRSGRCC 585
STR LL E P +T AE++EE C CP L++KQRLIGF +C LG ++ G+ RIV LV GNP PF + YS+GNVI+IC+SFFL GP+ Q K M PTRV+AT Y+ +G T VAL R+P RA L++ LV +Q ++ WY +SYIPFAR++ C+ CC
Sbjct: 3 STRSLLTGEPRP-QTVAEQVEEECCKACPRLSWKQRLIGFSLCFALGVVVELGSFMRIVELVGGNPKPFAVTYSLGNVIAICSSFFLAGPYKQCKSMLAPTRVIATATYLVAIGATLFVALFDARIPARAGLIILLVCVQTIALFWYMISYIPFARDFVKNCCKG--CC 168
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Match: W7THB3_9STRA (Vesicle transport protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7THB3_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.300e-44 Identity = 83/169 (49.11%), Postives = 113/169 (66.86%), Query Frame = 1
Query: 82 STRRLLGQEEAPLKTRAEELEEYVCSFCPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAPRMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGACRSGRCCG 588
S RRLLG E P KT E LEE +C +CP+LT++QRL G C +G IL FG+ FR +L+ G+P PF + Y+IGN+IS+ S FL+GP++Q+K MF PTR V T VY+ TL T +A + +P + PLLV ++++QF+S +Y LSYIPFAR+ C G C G
Sbjct: 33 SARRLLGVEARP-KTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSD-VPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTC--GSCLG 197
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Match: A0A7S3MGJ6_9STRA (Vesicle transport protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGJ6_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.130e-40 Identity = 71/152 (46.71%), Postives = 105/152 (69.08%), Query Frame = 1
Query: 133 EELEEYVCSFCPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAPR-MPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGACRSGRCC 585
E+LEE VCS P+LTY+QR+IG CL +GFIL+ G+ FR+++L+ G+P PF Y+IGN++ + ++ FL GP +Q+K+MF PTR+VAT VY+ + T +A P +P+R L+ + QF++ +WY LSYIPFARE C++ CC
Sbjct: 29 EDLEEQVCSIFPALTYQQRIIGCLTCLLIGFILSMGSTFRLIKLMEGDPEPFATMYTIGNIVGLFSTCFLYGPVSQVKQMFAPTRLVATAVYLFFMATTLLLAFYPEYIPVRVMWLLISIFFQFLALVWYNLSYIPFAREIMKNMCQT-MCC 179
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Match: A0A7S3JV88_9STRA (Vesicle transport protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV88_9STRA) HSP 1 Score: 145 bits (365), Expect = 8.130e-40 Identity = 71/162 (43.83%), Postives = 106/162 (65.43%), Query Frame = 1
Query: 97 LGQEEAPLKTRAEELEEYVCSFCPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAPRMPL--RAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGACRSG 576
LG E KT AEE E+ +CS CP LTY+QR+ G+ C + F L+ G+ R+V LV GNP PFV+ Y++GNV++I S FL+GP AQ KKM++PTR +AT VY+ T+ T VA +P R +++ + +Q+++ +WY +S+IP+AR++ C G
Sbjct: 8 LGLAEEKPKTAAEEFEDALCSICPQLTYQQRIGGYIACFFVSFCLSIGSFTRLVELVKGNPAPFVVFYTLGNVMAIIGSLFLSGPRAQCKKMWDPTRRIATSVYLLTIFFTIFVAFYEGIPDDGRIGIIIMCIFIQWIAMLWYTISFIPYARDYVIMICCQG 169
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Match: A0A7S2XZK4_9STRA (Vesicle transport protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZK4_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.330e-38 Identity = 65/135 (48.15%), Postives = 92/135 (68.15%), Query Frame = 1
Query: 190 LIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAPRMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGACRSGRCCGGD 594
+IG V L G +L+ G++FRI++L+ G P+PFV+ YS+GNV+S+C S FL+GPW QIK+MF PTR AT VY++TL T +A P +P + +L+ L ++Q ++ WY LSYIP AR +A C CC GD
Sbjct: 1 MIGCAVTLGFGLLLSMGSVFRIMQLIRGRPIPFVVFYSLGNVVSLCGSMFLSGPWNQIKRMFAPTRAFATIVYLSTLVTTLTLAFTPGVPFKGGILLILFIVQLLALFWYMLSYIPGARNYAT-KCLKASCCEGD 134
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Match: A0A7S2IBZ2_9STRA (Vesicle transport protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IBZ2_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.660e-37 Identity = 77/185 (41.62%), Postives = 120/185 (64.86%), Query Frame = 1
Query: 31 IEDRRASASGAYESVRVSTRRLL-----GQEEAPLKTRAEELEEYVCSFCPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALA-PRMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGAC 567
++D+ AS G ++V + LL G+EE K+ +++EE VC P+LT +QR+IG C+ G++L+FG+ FR+ L+ G P+PFV+ ++GN+I++C S FL GP AQ KKMF R +AT +Y++++ T VA A +MP + PLL+ L++ Q++S WY LSYIPFAR+ + C
Sbjct: 21 LKDKLASLRGGSDNV--DSESLLQSSATGEEE---KSWQDQIEEEVCELFPALTLQQRVIGCISCMVFGYLLSFGSFFRLAGLLKGKPVPFVVAATLGNIIALCGSCFLTGPAAQTKKMFHDDRRIATIMYLSSVIATLIVAFACHKMPGQGPLLILLMICQYISVTWYCLSYIPFARQMVSQFC 200
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Match: G4ZDQ4_PHYSP (Vesicle transport protein n=11 Tax=Phytophthora TaxID=4783 RepID=G4ZDQ4_PHYSP) HSP 1 Score: 129 bits (324), Expect = 1.220e-33 Identity = 62/143 (43.36%), Postives = 94/143 (65.73%), Query Frame = 1
Query: 163 CPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISI-CASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAPRMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGACRSGRCCG 588
CPSL+Y++R+IG C LGF+L+ G+ FR+ +LV GNP PF I Y+IGNV+SI C +FF+ GPW Q++ MF R + VY+ + +T + +P + R L++ V++QF++ +WY LSY+P+ R A C+ R CG
Sbjct: 38 CPSLSYQERVIGCVTCFMLGFVLSLGSTFRLAKLVHGNPAPFAIAYTIGNVLSIGCTTFFV-GPWKQVQTMFHSKRRYSALVYVVFIFVTLLLCFSPHIHHRMLLVLLSVIVQFLALVWYTLSYVPYGRSIALSCCK--RVCG 177
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Match: A0A225V2N0_9STRA (Vesicle transport protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225V2N0_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.540e-33 Identity = 59/136 (43.38%), Postives = 87/136 (63.97%), Query Frame = 1
Query: 163 CPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAPRMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAGACR 570
CPSL+Y++R+IG C LGF+L+ G+ FR+ +LV GNP PF I Y+IGN++SIC + F GPW QI+ MF R + VY+ + LT + + R L++ V++QFM+ +WY LSY+P+ R A C+
Sbjct: 34 CPSLSYQERIIGCITCFLLGFLLSLGSTFRLAKLVHGNPAPFAIAYTIGNILSICCTTFFVGPWKQIQTMFHSKRRYSAVVYVVFMFLTLLLCFNHHIHHRLLLVLLSVLVQFMALVWYTLSYVPYGRSIALSCCK 169 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354238 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17595 ID=mRNA_17595|Name=jgi.p|Trimin1|354238|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_220:165882..167460+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCGGACCTTGCAAGCGTATCATCATTCATCGAGGACAGGAGGGCGTCback to top protein sequence of jgi.p|Trimin1|354238 >Trimin1|354238|estExt_Genemark1.C_Ctg_2200020 ID=Trimin1|354238|estExt_Genemark1.C_Ctg_2200020|Name=jgi.p|Trimin1|354238|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=201bp MPDLASVSSFIEDRRASASGAYESVRVSTRRLLGQEEAPLKTRAEELEEYback to top mRNA from alignment at Contig_220:165882..167460+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17595 ID=mRNA_17595|Name=jgi.p|Trimin1|354238|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1579bp|location=Sequence derived from alignment at Contig_220:165882..167460+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_220:165882..167460+ >mRNA_17595 ID=mRNA_17595|Name=jgi.p|Trimin1|354238|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=603bp|location=Sequence derived from alignment at Contig_220:165882..167460+ (Tribonema minus UTEX_B_3156 )back to top |