mRNA_17565 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354299
Unique Name	mRNA_17565
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354299 vs. uniprot
Match: A0A836CGJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ9_9STRA)

HSP 1 Score: 942 bits (2435), Expect = 0.000e+0
Identity = 661/661 (100.00%), Postives = 661/661 (100.00%), Query Frame = 1

Query:    1 MTLGAQAAXXXXXXXXXXXXDGLSAHGRDDAXXXXXXXGAVSGEEARREGAVAARAQLEEHAKALANMREQHDLALQQVIQEKDAEYHKATENHKKALNDVQLELLNNRQHMINTEAQWRRRLEDVEQRERAELARTKEHFEALLARAKGETAAALEGLGRALWKFGGDGQAIAAAREGQLLYSASWSHVGGAQYEAVTLSKPLPPRMLHLPLGGIASAAGLAASIALARDVPLTARTDAPHPSRACALTGPLVAPPVTLRGGSAVAAGAAAGALDGGYPSGSGLSREAGEGGGLQGGXXXXAGDVDKLRSLAMLLEESRKEARWLRDRNGESERVIEALRKTIMRQAELNSQRDSSTGXXXXXXXXXXXXINTNNGPLRGHHYAGPRGPPSRGPRPGPPDWQSERAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDRSWGARSAPLPLHDAPDRSRXXXXXXXQAAAAALQQYLAAVPAAAAQQPWDRAPLRDSAAFLTMPYPPGAAPPAFGPGALFKHVGGGXXXXXXXXXXXXXXXXXAHAMHHALPTRSSSSPHLQAHAQLGXXXXXXXXXXXXXAMRMPQPRQPASMLSRPGSMSSLNHIHEDVHEYEPGAGELDTATSVLSGF 1983
            MTLGAQAAXXXXXXXXXXXXDGLSAHGRDDAXXXXXXXGAVSGEEARREGAVAARAQLEEHAKALANMREQHDLALQQVIQEKDAEYHKATENHKKALNDVQLELLNNRQHMINTEAQWRRRLEDVEQRERAELARTKEHFEALLARAKGETAAALEGLGRALWKFGGDGQAIAAAREGQLLYSASWSHVGGAQYEAVTLSKPLPPRMLHLPLGGIASAAGLAASIALARDVPLTARTDAPHPSRACALTGPLVAPPVTLRGGSAVAAGAAAGALDGGYPSGSGLSREAGEGGGLQGGXXXXAGDVDKLRSLAMLLEESRKEARWLRDRNGESERVIEALRKTIMRQAELNSQRDSSTGXXXXXXXXXXXXINTNNGPLRGHHYAGPRGPPSRGPRPGPPDWQSERAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDRSWGARSAPLPLHDAPDRSRXXXXXXXQAAAAALQQYLAAVPAAAAQQPWDRAPLRDSAAFLTMPYPPGAAPPAFGPGALFKHVGGGXXXXXXXXXXXXXXXXXAHAMHHALPTRSSSSPHLQAHAQLGXXXXXXXXXXXXXAMRMPQPRQPASMLSRPGSMSSLNHIHEDVHEYEPGAGELDTATSVLSGF
Sbjct:    1 MTLGAQAAXXXXXXXXXXXXDGLSAHGRDDAXXXXXXXGAVSGEEARREGAVAARAQLEEHAKALANMREQHDLALQQVIQEKDAEYHKATENHKKALNDVQLELLNNRQHMINTEAQWRRRLEDVEQRERAELARTKEHFEALLARAKGETAAALEGLGRALWKFGGDGQAIAAAREGQLLYSASWSHVGGAQYEAVTLSKPLPPRMLHLPLGGIASAAGLAASIALARDVPLTARTDAPHPSRACALTGPLVAPPVTLRGGSAVAAGAAAGALDGGYPSGSGLSREAGEGGGLQGGXXXXAGDVDKLRSLAMLLEESRKEARWLRDRNGESERVIEALRKTIMRQAELNSQRDSSTGXXXXXXXXXXXXINTNNGPLRGHHYAGPRGPPSRGPRPGPPDWQSERAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDRSWGARSAPLPLHDAPDRSRXXXXXXXQAAAAALQQYLAAVPAAAAQQPWDRAPLRDSAAFLTMPYPPGAAPPAFGPGALFKHVGGGXXXXXXXXXXXXXXXXXAHAMHHALPTRSSSSPHLQAHAQLGXXXXXXXXXXXXXAMRMPQPRQPASMLSRPGSMSSLNHIHEDVHEYEPGAGELDTATSVLSGF 661

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BLAST of jgi.p|Trimin1|354299 vs. uniprot
Match: A0A835YKF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKF1_9STRA)

HSP 1 Score: 244 bits (624), Expect = 3.620e-67
Identity = 274/646 (42.41%), Postives = 296/646 (45.82%), Query Frame = 1

Query:  187 KALANMREQHDLALQQVIQEKDAEYHKATENHKKALNDVQLELLNNRQHMINTEAQWRRRLEDVEQRERAELARTKEHFEALLARAKGETAAALEGLGRALWKFGGDGQAIAAAREGQLLYSASWSHVGGAQYEAVTLSKPLPPRMLHLPLGGIASAAGLAASIALARDVPLTARTDAPHPSRACALTGPLVAPPVTLRGGSAVAAGAAAGALDGGYPSGSGLSREAGEGGGLQGGXXXXAGDVDKLRSLAMLLEESRKEARWLRDRNGESERVIEALRKTIMRQAELNSQRDSS--TGXXXXXXXXXXXXINTNNGPLRGHHYAGPRGPPSRGPRPGPPDWQSERAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDRSWGARSAPLPLHDAPDRSRXXXXXXXQAAAAAL-----QQYLAAVPAAAAQQP-----WDRAPLRDSA---AFLTMPYP----------PGAAPPAFGPGALFKHVGGGXXXXXXXXXXXXXXXXXAHAMH----HALPTRSSSSPHLQAHAQL-----------GXXXXXXXXXXXXXAMRMPQPRQPASM----------LSRPGSMSSLNHIHEDVHEYEPGAGELDTATSVL 1974
            + LANMREQHDLALQQVIQEKDAE+HKA E  KK+LND QLELLNNRQHMINTEAQWRRRLE+VEQRERAE+AR K+H+E LLARAK ETAAALEGLG                                                                                                       SAVAAGAAAG LDG +  G+G     GE      G    A D +K+RSLA+LLEESRKEA+WLRDR  ESER+IEALRKTIMRQAEL+SQRD++   G    XXXXXXXX      P R     G RG    GPR G  DWQ +RAP                                        XXXXXX             PDRSW +RSAPLPL DAPDRSR       QAAA A      Q  L   P    QQP     WD   LR  A   A L    P           GA P   G   L +   GG              XXX           L  RS+SSP L     L            XXXXXXXXX     MRMPQPRQ              LSR  S+ SLN I ED HEYEPGAGELDTATSVL
Sbjct:  107 RVLANMREQHDLALQQVIQEKDAEHHKAAEMFKKSLNDSQLELLNNRQHMINTEAQWRRRLEEVEQRERAEVARIKDHYEGLLARAKSETAAALEGLG-------------------------------------------------------------------------------------------------------SAVAAGAAAGNLDGVHSGGAG-----GE------GTQVSAADSEKIRSLAVLLEESRKEAKWLRDRTSESERIIEALRKTIMRQAELSSQRDNAHAAGPKAGXXXXXXXXXXXXXXPNRPLGPQGGRG----GPRGG--DWQGDRAPPHHHRGDRDHYNNGLGLRQHSGPGARAPPAHVPPPHLHGGXXXXXXYGDPAGGL-----PDRSW-SRSAPLPLPDAPDRSRSAPLPEHQAAAHAXXXXAQQHALLGPPMLPLQQPQQHPQWD---LRGGAVPPANLQQQQPRDPFMGGGGGSGAFPMGLGAPPLHQQQYGGGAFDSAPGYGAPLPXXXXXXXQLRGPAGLTQRSNSSPVLNMPGSLLGGXXXXXXXXXXXXXXXXXXDALGGMRMPQPRQSGDXXXXXXXXGYALSRAASVGSLNFISEDAHEYEPGAGELDTATSVL 623

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BLAST of jgi.p|Trimin1|354299 vs. uniprot
Match: A0A6H5KMF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 5.920e-23
Identity = 103/305 (33.77%), Postives = 133/305 (43.61%), Query Frame = 1

Query:  172 LEEHAKALANMREQHDLALQQVIQEKDAEYHKATENHKKALNDVQLELLNNRQHMINTEAQWRRRLEDVEQRERAELARTKEHFEALLARAKGETA---AALEGLGRALWKFGGDGQAIAAAREGQLLYSASWSHVGGAQYEAVTLSKPLPPRMLHLPLGGIASAAGLAASIALARDVPLTARTDAPHPSRACALTGPLVAPPVTLRGGSAVAAGAAAGALDGGYPSGSGLSREAGEGGGLQGGXXXXAGDVDKLRSLAMLLEESRKEARWLRDRNGESERVIEALRKTIMRQAELNSQRDSSTG 1077
            +++H K + ++REQHD  +QQ++ EKD E  K TE+ KK LN+VQLELLNNRQHMINTEAQWR+RLE+ EQRE  E+ R +E F+  LA  K + +   AA+ GLG            +A  R             GGA                 L                            A H                                                                 K+RSL++L+EE++KE+RWLR+RN E ERV+EALRKTIMRQAEL+SQR    G
Sbjct:  228 IDQHEKFVRDLREQHDQTIQQILMEKDVENSKCTESFKKQLNEVQLELLNNRQHMINTEAQWRKRLEEQEQRESGEMMRMREAFQDELASVKSDLSTAHAAMGGLGS---------MGMADGRR------------GGAXXXXXXXXXXXXXXXXXLXXXXX--------------------XXXADH-----------------------------------------------------------------KVRSLSLLVEEAKKESRWLRERNQELERVVEALRKTIMRQAELSSQRQDQQG 426

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BLAST of jgi.p|Trimin1|354299 vs. uniprot
Match: D7FTA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA0_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 4.420e-20
Identity = 93/302 (30.79%), Postives = 123/302 (40.73%), Query Frame = 1

Query:  172 LEEHAKALANMREQHDLALQQVIQEKDAEYHKATENHKKALNDVQLELLNNRQHMINTEAQWRRRLEDVEQRERAELARTKEHFEALLARAKGETAAALEGLGRALWKFGGDGQAIAAAREGQLLYSASWSHVGGAQYEAVTLSKPLPPRMLHLPLGGIASAAGLAASIALARDVPLTARTDAPHPSRACALTGPLVAPPVTLRGGSAVAAGAAAGALDGGYPSGSGLSREAGEGGGLQGGXXXXAGDVDKLRSLAMLLEESRKEARWLRDRNGESERVIEALRKTIMRQAELNSQRDSSTG 1077
            +++  K + ++REQHD  +QQ++ EKD E  K TE+ KK LN+VQLELLNNRQHMINTEAQWR+RLE+ EQRE  E+ R +E F+  LA  K + + A   +G         G       +G                                                                                                                                K+RSL++L+EE++KE+RWLR+RN E ERV+EALRKTIMRQAEL+SQR    G
Sbjct:  277 VDQQEKFVRDLREQHDQTIQQILMEKDVENSKCTESFKKQLNEVQLELLNNRQHMINTEAQWRKRLEEQEQRESGEMMRMREAFQDELASVKSDLSTAHAAMG---------GLGAXXMADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD----------------------------------------------------------------------------------------------HKVRSLSLLVEEAKKESRWLRERNQELERVVEALRKTIMRQAELSSQRQDQQG 475

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354299 vs. uniprot

BLAST of jgi.p|Trimin1|354299 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A836CGJ9_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YKF1_9STRA	3.620e-67	42.41	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5KMF9_9PHAE	5.920e-23	33.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FTA0_ECTSI	4.420e-20	30.79	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_227	contig	Contig_227:80137..84205 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354299\|estExt_Genemark1.C_Ctg_2270013
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2BZB3@1\|root,2SGA8@2759\|Eukaryota
Evalue	4.55e-21
Seed ortholog	2880.D7FTA0
Hectar predicted targeting category	other localisation
TranscriptId	354621
Track	FilteredModels1
ProteinId	354299

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354299	gene_17565	Tribonema minus UTEX_B_3156	gene	Contig_227 80137..84205 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354299	Trimin1\|354299\|estExt_Genemark1.C_Ctg_2270013	Tribonema minus UTEX_B_3156	polypeptide	Contig_227 80137..83703 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_17565_1	exon_17565_1	Tribonema minus UTEX_B_3156	exon	Contig_227 80137..80370 +
exon_17565_2	exon_17565_2	Tribonema minus UTEX_B_3156	exon	Contig_227 80837..80932 +
exon_17565_3	exon_17565_3	Tribonema minus UTEX_B_3156	exon	Contig_227 81341..81492 +
exon_17565_4	exon_17565_4	Tribonema minus UTEX_B_3156	exon	Contig_227 81520..81577 +
exon_17565_5	exon_17565_5	Tribonema minus UTEX_B_3156	exon	Contig_227 81815..82288 +
exon_17565_6	exon_17565_6	Tribonema minus UTEX_B_3156	exon	Contig_227 82732..84205 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_17565	CDS_17565	Tribonema minus UTEX_B_3156	CDS	Contig_227 80137..80370 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_17565	UTR3_17565	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_227 83704..84205 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_227:80137..84205+
coding sequence from alignment at Contig_227:80137..84205+

spliced messenger RNA

>mRNA_17565 ID=mRNA_17565|Name=jgi.p|Trimin1|354299|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2488bp|location=Sequence derived from alignment at Contig_227:80137..84205+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCTCGGCGCACAGGCGGCGCAGGCTGCTGCCGCCGCTGCTGCTGC
TGCTGCTGCTGACGGTCTGTCTGCCCACGGCCGCGATGACGCGCAGGCGG
CGCAGGCGGCGGCGGGCGCGGTGAGTGGCGAGGAGGCGCGGCGCGAGGGC
GCGGTGGCGGCGCGCGCACAGCTCGAGGAGCACGCCAAGGCGCTGGCAAA
CATGCGCGAGCAGCACGACCTCGCGCTGCAGCAGGTCATCCAGGAGAAGG
ACGCGGAGTACCACAAGGCCACGGAGAACCATAAGAAGGCGCTCAATGAC
GTGCAGCTCGAGCTCCTCAACAACCGCCAGCACATGATCAACACGGAGGC
ACAGTGGCGGCGGCGCCTGGAGGACGTGGAGCAGCGCGAGCGCGCGGAGC
TGGCGCGCACGAAGGAGCACTTTGAGGCGCTGCTGGCGCGTGCCAAGGGC
GAGACTGCCGCCGCGCTGGAGGGCCTCGGCAGGGCGCTGTGGAAGTTTGG
TGGTGACGGACAGGCGATCGCAGCAGCGCGTGAGGGGCAGCTGCTGTACT
CAGCCAGCTGGTCACACGTAGGAGGCGCACAGTATGAGGCTGTCACTCTG
TCAAAGCCGCTGCCGCCGCGCATGCTGCACTTACCTCTGGGGGGCATCGC
GAGCGCCGCAGGCCTCGCAGCCTCCATCGCTCTCGCGCGCGACGTGCCGC
TGACGGCACGCACAGATGCTCCTCACCCGTCGCGTGCGTGCGCACTCACC
GGCCCCCTCGTTGCTCCCCCCGTGACTCTCCGCGGCGGCAGCGCGGTCGC
CGCCGGCGCCGCGGCGGGCGCGCTCGACGGCGGCTACCCGTCCGGCTCAG
GGCTGAGCCGTGAGGCGGGGGAGGGGGGGGGGCTGCAGGGGGGCGGCGGC
GGCGGCGCGGGCGACGTGGACAAGCTGCGCTCGCTGGCCATGCTGCTGGA
GGAGAGCCGCAAGGAGGCGCGCTGGCTGCGCGACCGCAACGGCGAGAGCG
AGCGCGTCATCGAGGCCCTGCGCAAGACCATCATGCGCCAGGCGGAGCTC
AACAGCCAGCGCGACAGCTCCACGGGCGGCGGCGGCGGCGGCGGAGGCGG
CGGCAGCGGCGGCATCAACACCAACAACGGCCCGCTGCGCGGCCACCACT
ACGCGGGCCCACGGGGGCCCCCCTCCCGCGGCCCGCGGCCGGGGCCCCCG
GACTGGCAATCGGAGCGCGCGCCGCCGCACCACCACCACCGCGGCGACGG
CAGCGGCGGCGGCGGCGCGCCGCACCGCGACGCCCACTACAATTCGCGGA
GCGGGGGAGGGGGGCGCGGCGGCGGCGGCGGCGGCCCCCCCCACCTGCGT
GCCCCGCCCCCGCACCATCACGGCAACTACCAGGACGACGGCGGCGGCGA
CCCGGACCGGTCCTGGGGCGCCCGGTCCGCGCCGCTGCCGCTGCACGACG
CGCCGGACCGCTCGCGCAGCGCGCCGCTGCCGGAGCACCAGGCGGCGGCG
GCGGCGCTGCAGCAGTACCTCGCAGCCGTGCCGGCAGCGGCGGCGCAGCA
GCCGTGGGACCGCGCGCCGCTGCGCGACTCGGCGGCGTTTCTGACCATGC
CGTACCCGCCGGGCGCGGCGCCGCCGGCGTTCGGCCCTGGCGCGCTGTTC
AAACATGTTGGGGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCGGCGATGG
CGGGGGGTACGGCGGCGGCGCGCACGCGATGCACCACGCGCTGCCGACGC
GCAGCAGCAGCAGCCCGCACCTGCAGGCGCACGCGCAGCTCGGCGGCGGC
GGCGGCGGCGCCATGGCGGCGCAGGGCGGCGGCGCCATGCGCATGCCGCA
GCCGCGCCAGCCGGCGTCCATGCTGAGCCGGCCGGGCAGCATGAGCAGCC
TGAACCACATCCACGAGGATGTGCACGAGTACGAACCTGGCGCAGGCGAG
CTGGACACGGCGACGTCCGTCCTGTCGGGATTCTGAGGCAGTGGCAGGCG
CGGTCGGCGCCCTCGATTGGGGGGGGGAGGCGGCAGGGTTTTCATTCAGT
CAGTGCTCAACTTGGTGGTGTGTCGTCACGGTGCCGCCCGTGCGTTTTTT
ATGGCGATTATACACAGTCTAGGCGCGGCGCGGGCGCGCCTGCGCGCGTG
CAATCAGCACCTCGGGATTTCGCACGTCAACTGGCGAGGCACGGATGGAC
TGCGGCACTTACCCATGTGGTACGTGCCCTCGGAAGCAGCGGACCGACAG
CATCAGTCAGGAAGCGCGGGTTCCATCACCAGAACGACCGGTGAATTCAC
GGCAGGGAGTGCGTGCGCTCTCCAGCAACGGGGGCGCGTAGCACCAAAAG
CTGTGCACAGCACGCAGCAGGAATGGATGGGTGTTGCAAAAATGTTTGTC
GGTAGAGCGCGCATCGGTGGTGTGGTTTTTGTGTGGTGAGGTCAGGAAGG
CAGACGAATGGGGAGGGGGGAAAGGGGGGGGGGGGGGG

protein sequence of jgi.p|Trimin1|354299

>Trimin1|354299|estExt_Genemark1.C_Ctg_2270013 ID=Trimin1|354299|estExt_Genemark1.C_Ctg_2270013|Name=jgi.p|Trimin1|354299|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=662bp
MTLGAQAAQAAAAAAAAAAADGLSAHGRDDAQAAQAAAGAVSGEEARREG
AVAARAQLEEHAKALANMREQHDLALQQVIQEKDAEYHKATENHKKALND
VQLELLNNRQHMINTEAQWRRRLEDVEQRERAELARTKEHFEALLARAKG
ETAAALEGLGRALWKFGGDGQAIAAAREGQLLYSASWSHVGGAQYEAVTL
SKPLPPRMLHLPLGGIASAAGLAASIALARDVPLTARTDAPHPSRACALT
GPLVAPPVTLRGGSAVAAGAAAGALDGGYPSGSGLSREAGEGGGLQGGGG
GGAGDVDKLRSLAMLLEESRKEARWLRDRNGESERVIEALRKTIMRQAEL
NSQRDSSTGGGGGGGGGGSGGINTNNGPLRGHHYAGPRGPPSRGPRPGPP
DWQSERAPPHHHHRGDGSGGGGAPHRDAHYNSRSGGGGRGGGGGGPPHLR
APPPHHHGNYQDDGGGDPDRSWGARSAPLPLHDAPDRSRSAPLPEHQAAA
AALQQYLAAVPAAAAQQPWDRAPLRDSAAFLTMPYPPGAAPPAFGPGALF
KHVGGGGGGGGARGGDGGGYGGGAHAMHHALPTRSSSSPHLQAHAQLGGG
GGGAMAAQGGGAMRMPQPRQPASMLSRPGSMSSLNHIHEDVHEYEPGAGE
LDTATSVLSGF*

mRNA from alignment at Contig_227:80137..84205+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_17565 ID=mRNA_17565|Name=jgi.p|Trimin1|354299|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4069bp|location=Sequence derived from alignment at Contig_227:80137..84205+ (Tribonema minus UTEX_B_3156 )
ATGACCCTCGGCGCACAGGCGGCGCAGGCTGCTGCCGCCGCTGCTGCTGC
TGCTGCTGCTGACGGTCTGTCTGCCCACGGCCGCGATGACGCGCAGGCGG
CGCAGGCGGCGGCGGGCGCGGTGAGTGGCGAGGAGGCGCGGCGCGAGGGC
GCGGTGGCGGCGCGCGCACAGCTCGAGGAGCACGCCAAGGCGCTGGCAAA
CATGCGCGAGCAGCACGACCTCGCGCTGCAGCAGGTGACGGGAGGCTGCG
TGCGCAGTCTGCAGTGTGCATCAGGATGACGCGCTTCATCACAGCGGGCT
CTCTGTCCGCGTCCCTTGCCACTGCCGGGCGTGTGCATACGCAGGGGTGG
GGCTGTGGTGCGGTGATTCCATGACCAGACGTCGTGCAGCGTCCGCAGCT
GCTGCTGATGCCAGTGCACTCGAGCAGTAGGGCTACAACAGAGCCGGAAC
TTGCAACACTAGCCAGTAAGTCTGCGTGTGGTGACGTGCCGGTGACTGGC
AGCAGATGCGCCGCAGGCGGCCCCTGCGGCAGTGCGCGCAGCGGCGGCTT
CGCTTGTATGCCTATGTGCCACGTTATGCAGTACACACTGCAGCGCTGCA
CTGTTACGCGGCACCGCCCTCCATCGCTGTTGGCCCACAATGCGTTGAGC
CCGCGCTGACAGTGGATGCGCGCTGGTGACTCTCCTCTGCGTGCGCACAG
GTCATCCAGGAGAAGGACGCGGAGTACCACAAGGCCACGGAGAACCATAA
GAAGGCGCTCAATGACGTGCAGCTCGAGCTCCTCAACAACCGCCAGGTAC
TCGCCGCTGAAATTGCTCACCTTGTATCCATCAAGTTGAACGTTGTGTTG
AAGTGCACCACTGGTGTGTGTCGCTTCGTCGAGGTGGCCCCTTGTGATGC
ACCCTTGCTTGTGCTACATGTGTATACGTAAACATGCGCCATGTAATATA
TTGTGACTGCATCTCATTGCGCGGATGATGGCTGCAGTGGGCACGCCCCC
CCCCCCCCTCCTCCCCCTTCTCTCCCAGCCTTGCCCCCTGATCAACGGGG
CCGCTCCCATGCATGCGTGCCTCCATTCTGCTCCGCCGACGTAAATGGAC
GTGTGCATTTGTGCGTACGCATACACTTCGAAGAATCGATGAGCGTCATC
GGCTGCAGGCCGGCCGCCTCACCGCGCATCCGCCGTCTGCCGCGCGCCGC
GCAGCACATGATCAACACGGAGGCACAGTGGCGGCGGCGCCTGGAGGACG
TGGAGCAGCGCGAGCGCGCGGAGCTGGCGCGCACGAAGGAGCACTTTGAG
GCGCTGCTGGCGCGTGCCAAGGGCGAGACTGCCGCCGCGCTGGAGGGCCT
CGGCAGGTGAGCAGCGGCGGATGCGACGCTTAGGGCGCTGTGGAAGTTTG
GTGGTGACGGACAGGCGATCGCAGCAGCGCGTGAGGGGCAGGTAGCGCGG
AAGGTTACTGATGGGCACAGTGTCAGCATGTGCTGCAGGTGCGCACTAAG
GCACGCTGCGCGCCGCTGCTGGTGCTCGCCAGGAGATGAAACTGCCGCTG
CCCTGGCGGGCCATACCAGATTGCGTCCGGTCGCGGCCGCCGCTGCCGCG
CACGTTGACATGCAATGTTGCGAGTCATATCCCTCTGACACTTGGAAAGC
ACTGCCATGGGCACTGCGGCGCGTGCAGCTGCTGTACTCAGCCAGCTGGT
CACACGTAGGAGGCGCACAGTATGAGGCTGTCACTCTGTCAAAGCCGCTG
CCGCCGCGCATGCTGCACTTACCTCTGGGGGGCATCGCGAGCGCCGCAGG
CCTCGCAGCCTCCATCGCTCTCGCGCGCGACGTGCCGCTGACGGCACGCA
CAGATGCTCCTCACCCGTCGCGTGCGTGCGCACTCACCGGCCCCCTCGTT
GCTCCCCCCGTGACTCTCCGCGGCGGCAGCGCGGTCGCCGCCGGCGCCGC
GGCGGGCGCGCTCGACGGCGGCTACCCGTCCGGCTCAGGGCTGAGCCGTG
AGGCGGGGGAGGGGGGGGGGCTGCAGGGGGGCGGCGGCGGCGGCGCGGGC
GACGTGGACAAGCTGCGCTCGCTGGCCATGCTGCTGGAGGAGAGCCGCAA
GGAGGCGCGCTGGCTGCGCGACCGCAACGGCGAGAGCGAGCGCGTCATCG
AGGTCAGCAGCAGTGCGCAGCAAAGAGCTCGTGATGAGCGCCAGTCCTTG
CAATCGGGTGACCGCAATCCTCAGGTCGGCGGTGCTTTCGGCAGAGATCT
TGTATCATCGCCGTGCTTCAGAGCGAGCGGGCCATTGAGATCAGCGGCGC
TGCTCCGCAAGAAGCCTCCGCAAGCGCCATTTTTAACCTGTGCTGGTTGC
GGGTGCATCGGAGCACTTGAGAGATGTTGCTCCAAGCGACTTGACGGTGC
GGGAGCTCCAAGCTGCGTGCCGCTGTCATCACGTGCTTGACGGCGTTCGC
GCGCTCGCTTCGATCATTGCAAGCGCTCTCGCTGATGCGCGCCGTTGGCC
GAGCGATCCTACACAGCTTGAAGTTCACACGCACTCCAGCACGCCACGAG
CAGCGCGCTAGACATGACGTGCTGCCGCACGCGCGCGCGCCGCAGGCCCT
GCGCAAGACCATCATGCGCCAGGCGGAGCTCAACAGCCAGCGCGACAGCT
CCACGGGCGGCGGCGGCGGCGGCGGAGGCGGCGGCAGCGGCGGCATCAAC
ACCAACAACGGCCCGCTGCGCGGCCACCACTACGCGGGCCCACGGGGGCC
CCCCTCCCGCGGCCCGCGGCCGGGGCCCCCGGACTGGCAATCGGAGCGCG
CGCCGCCGCACCACCACCACCGCGGCGACGGCAGCGGCGGCGGCGGCGCG
CCGCACCGCGACGCCCACTACAATTCGCGGAGCGGGGGAGGGGGGCGCGG
CGGCGGCGGCGGCGGCCCCCCCCACCTGCGTGCCCCGCCCCCGCACCATC
ACGGCAACTACCAGGACGACGGCGGCGGCGACCCGGACCGGTCCTGGGGC
GCCCGGTCCGCGCCGCTGCCGCTGCACGACGCGCCGGACCGCTCGCGCAG
CGCGCCGCTGCCGGAGCACCAGGCGGCGGCGGCGGCGCTGCAGCAGTACC
TCGCAGCCGTGCCGGCAGCGGCGGCGCAGCAGCCGTGGGACCGCGCGCCG
CTGCGCGACTCGGCGGCGTTTCTGACCATGCCGTACCCGCCGGGCGCGGC
GCCGCCGGCGTTCGGCCCTGGCGCGCTGTTCAAACATGTTGGGGGCGGCG
GCGGCGGCGGCGGCGCCCGCGGCGGCGATGGCGGGGGGTACGGCGGCGGC
GCGCACGCGATGCACCACGCGCTGCCGACGCGCAGCAGCAGCAGCCCGCA
CCTGCAGGCGCACGCGCAGCTCGGCGGCGGCGGCGGCGGCGCCATGGCGG
CGCAGGGCGGCGGCGCCATGCGCATGCCGCAGCCGCGCCAGCCGGCGTCC
ATGCTGAGCCGGCCGGGCAGCATGAGCAGCCTGAACCACATCCACGAGGA
TGTGCACGAGTACGAACCTGGCGCAGGCGAGCTGGACACGGCGACGTCCG
TCCTGTCGGGATTCTGAGGCAGTGGCAGGCGCGGTCGGCGCCCTCGATTG
GGGGGGGGAGGCGGCAGGGTTTTCATTCAGTCAGTGCTCAACTTGGTGGT
GTGTCGTCACGGTGCCGCCCGTGCGTTTTTTATGGCGATTATACACAGTC
TAGGCGCGGCGCGGGCGCGCCTGCGCGCGTGCAATCAGCACCTCGGGATT
TCGCACGTCAACTGGCGAGGCACGGATGGACTGCGGCACTTACCCATGTG
GTACGTGCCCTCGGAAGCAGCGGACCGACAGCATCAGTCAGGAAGCGCGG
GTTCCATCACCAGAACGACCGGTGAATTCACGGCAGGGAGTGCGTGCGCT
CTCCAGCAACGGGGGCGCGTAGCACCAAAAGCTGTGCACAGCACGCAGCA
GGAATGGATGGGTGTTGCAAAAATGTTTGTCGGTAGAGCGCGCATCGGTG
GTGTGGTTTTTGTGTGGTGAGGTCAGGAAGGCAGACGAATGGGGAGGGGG
GAAAGGGGGGGGGGGGGGG

Coding sequence (CDS) from alignment at Contig_227:80137..84205+

>mRNA_17565 ID=mRNA_17565|Name=jgi.p|Trimin1|354299|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1986bp|location=Sequence derived from alignment at Contig_227:80137..84205+ (Tribonema minus UTEX_B_3156 )
ATGACCCTCGGCGCACAGGCGGCGCAGGCTGCTGCCGCCGCTGCTGCTGC
TGCTGCTGCTGACGGTCTGTCTGCCCACGGCCGCGATGACGCGCAGGCGG
CGCAGGCGGCGGCGGGCGCGGTGAGTGGCGAGGAGGCGCGGCGCGAGGGC
GCGGTGGCGGCGCGCGCACAGCTCGAGGAGCACGCCAAGGCGCTGGCAAA
CATGCGCGAGCAGCACGACCTCGCGCTGCAGCAGGTCATCCAGGAGAAGG
ACGCGGAGTACCACAAGGCCACGGAGAACCATAAGAAGGCGCTCAATGAC
GTGCAGCTCGAGCTCCTCAACAACCGCCAGCACATGATCAACACGGAGGC
ACAGTGGCGGCGGCGCCTGGAGGACGTGGAGCAGCGCGAGCGCGCGGAGC
TGGCGCGCACGAAGGAGCACTTTGAGGCGCTGCTGGCGCGTGCCAAGGGC
GAGACTGCCGCCGCGCTGGAGGGCCTCGGCAGGGCGCTGTGGAAGTTTGG
TGGTGACGGACAGGCGATCGCAGCAGCGCGTGAGGGGCAGCTGCTGTACT
CAGCCAGCTGGTCACACGTAGGAGGCGCACAGTATGAGGCTGTCACTCTG
TCAAAGCCGCTGCCGCCGCGCATGCTGCACTTACCTCTGGGGGGCATCGC
GAGCGCCGCAGGCCTCGCAGCCTCCATCGCTCTCGCGCGCGACGTGCCGC
TGACGGCACGCACAGATGCTCCTCACCCGTCGCGTGCGTGCGCACTCACC
GGCCCCCTCGTTGCTCCCCCCGTGACTCTCCGCGGCGGCAGCGCGGTCGC
CGCCGGCGCCGCGGCGGGCGCGCTCGACGGCGGCTACCCGTCCGGCTCAG
GGCTGAGCCGTGAGGCGGGGGAGGGGGGGGGGCTGCAGGGGGGCGGCGGC
GGCGGCGCGGGCGACGTGGACAAGCTGCGCTCGCTGGCCATGCTGCTGGA
GGAGAGCCGCAAGGAGGCGCGCTGGCTGCGCGACCGCAACGGCGAGAGCG
AGCGCGTCATCGAGGCCCTGCGCAAGACCATCATGCGCCAGGCGGAGCTC
AACAGCCAGCGCGACAGCTCCACGGGCGGCGGCGGCGGCGGCGGAGGCGG
CGGCAGCGGCGGCATCAACACCAACAACGGCCCGCTGCGCGGCCACCACT
ACGCGGGCCCACGGGGGCCCCCCTCCCGCGGCCCGCGGCCGGGGCCCCCG
GACTGGCAATCGGAGCGCGCGCCGCCGCACCACCACCACCGCGGCGACGG
CAGCGGCGGCGGCGGCGCGCCGCACCGCGACGCCCACTACAATTCGCGGA
GCGGGGGAGGGGGGCGCGGCGGCGGCGGCGGCGGCCCCCCCCACCTGCGT
GCCCCGCCCCCGCACCATCACGGCAACTACCAGGACGACGGCGGCGGCGA
CCCGGACCGGTCCTGGGGCGCCCGGTCCGCGCCGCTGCCGCTGCACGACG
CGCCGGACCGCTCGCGCAGCGCGCCGCTGCCGGAGCACCAGGCGGCGGCG
GCGGCGCTGCAGCAGTACCTCGCAGCCGTGCCGGCAGCGGCGGCGCAGCA
GCCGTGGGACCGCGCGCCGCTGCGCGACTCGGCGGCGTTTCTGACCATGC
CGTACCCGCCGGGCGCGGCGCCGCCGGCGTTCGGCCCTGGCGCGCTGTTC
AAACATGTTGGGGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCGGCGATGG
CGGGGGGTACGGCGGCGGCGCGCACGCGATGCACCACGCGCTGCCGACGC
GCAGCAGCAGCAGCCCGCACCTGCAGGCGCACGCGCAGCTCGGCGGCGGC
GGCGGCGGCGCCATGGCGGCGCAGGGCGGCGGCGCCATGCGCATGCCGCA
GCCGCGCCAGCCGGCGTCCATGCTGAGCCGGCCGGGCAGCATGAGCAGCC
TGAACCACATCCACGAGGATGTGCACGAGTACGAACCTGGCGCAGGCGAG
CTGGACACGGCGACGTCCGTCCTGTCGGGATTCTGA