mRNA_17458 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A836CIV8_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV8_9STRA) HSP 1 Score: 467 bits (1202), Expect = 1.160e-163 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1 Query: 1 MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE 717 MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE Sbjct: 1 MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE 239
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A836CID0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID0_9STRA) HSP 1 Score: 1829 bits (4737), Expect = 0.000e+0 Identity = 1100/1100 (100.00%), Postives = 1100/1100 (100.00%), Query Frame = 1 Query: 1 MKAKANRPPRRRTLDPSFGARCDTGGSGGHSGAWGWRWWQHSHPVRPPPSVPTTKAYGSSGAKGGTGPARGSCGGGYWRSGGGSGCSSSHNSVVSPASDTRSCAATGPHTSSTQMSAEDDELDDSAGAHPYGGDGGSSDSTDWHQCSGGSSAAELVELTTASAAHDVASTAHGGDGRQACSMGICCSSSSSNGSHTEGAFVIVARHTASKPDVLDLDDGNLETLLDTYPYLALAVLDDSPRSLALAAVWEQASAALLRAHGGGSXXXXXXXXXXXXXXXXXXXXXXXDADAAAQFARVVLPQQPGVHEWLAMYEGVPKQTRRERARCRDGRARRTHGALLPCHRAQAGAAAAPAAVVIRHGAVYEYGGSLDAPQRAAAYVLEDSQPVVARVRSVRGVGLLLRQGTVAVRSDADGHRWRTAAAPAPSRVVLGLFPEGAADGGCADAYAADGAAPLLSTAWQHFCAVAEALRGSGGDGAAAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGHSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAFAVTTDARLFDAVAGAGDTLAAARAEAAWRDAAXXXXXXDGGGVQEMGGAFTDAPALVLLEPTAPILSGDAAAHYSTHTYTGPLARRPLLDWVLATAPPPLTRLVGGPRAGPARVLLTARWLAARSGXXXXXXXXXVPALRVIAFTRGDAAEVAELAAAACALRGAAAFGYVVGGSFEEASAAAACPQQRIASLTKTAQLKLQCAAASPWLPAGVADAAAARAYGVDTTARRRAAAAIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLAMLAAQXXXXXXXXXXXXLLQAETPRAGAASPGSPSSPQ 3300 MKAKANRPPRRRTLDPSFGARCDTGGSGGHSGAWGWRWWQHSHPVRPPPSVPTTKAYGSSGAKGGTGPARGSCGGGYWRSGGGSGCSSSHNSVVSPASDTRSCAATGPHTSSTQMSAEDDELDDSAGAHPYGGDGGSSDSTDWHQCSGGSSAAELVELTTASAAHDVASTAHGGDGRQACSMGICCSSSSSNGSHTEGAFVIVARHTASKPDVLDLDDGNLETLLDTYPYLALAVLDDSPRSLALAAVWEQASAALLRAHGGGSXXXXXXXXXXXXXXXXXXXXXXXDADAAAQFARVVLPQQPGVHEWLAMYEGVPKQTRRERARCRDGRARRTHGALLPCHRAQAGAAAAPAAVVIRHGAVYEYGGSLDAPQRAAAYVLEDSQPVVARVRSVRGVGLLLRQGTVAVRSDADGHRWRTAAAPAPSRVVLGLFPEGAADGGCADAYAADGAAPLLSTAWQHFCAVAEALRGSGGDGAAAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGHSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAFAVTTDARLFDAVAGAGDTLAAARAEAAWRDAAXXXXXXDGGGVQEMGGAFTDAPALVLLEPTAPILSGDAAAHYSTHTYTGPLARRPLLDWVLATAPPPLTRLVGGPRAGPARVLLTARWLAARSGXXXXXXXXXVPALRVIAFTRGDAAEVAELAAAACALRGAAAFGYVVGGSFEEASAAAACPQQRIASLTKTAQLKLQCAAASPWLPAGVADAAAARAYGVDTTARRRAAAAIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLAMLAAQXXXXXXXXXXXXLLQAETPRAGAASPGSPSSPQ Sbjct: 1 MKAKANRPPRRRTLDPSFGARCDTGGSGGHSGAWGWRWWQHSHPVRPPPSVPTTKAYGSSGAKGGTGPARGSCGGGYWRSGGGSGCSSSHNSVVSPASDTRSCAATGPHTSSTQMSAEDDELDDSAGAHPYGGDGGSSDSTDWHQCSGGSSAAELVELTTASAAHDVASTAHGGDGRQACSMGICCSSSSSNGSHTEGAFVIVARHTASKPDVLDLDDGNLETLLDTYPYLALAVLDDSPRSLALAAVWEQASAALLRAHGGGSXXXXXXXXXXXXXXXXXXXXXXXDADAAAQFARVVLPQQPGVHEWLAMYEGVPKQTRRERARCRDGRARRTHGALLPCHRAQAGAAAAPAAVVIRHGAVYEYGGSLDAPQRAAAYVLEDSQPVVARVRSVRGVGLLLRQGTVAVRSDADGHRWRTAAAPAPSRVVLGLFPEGAADGGCADAYAADGAAPLLSTAWQHFCAVAEALRGSGGDGAAAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGHSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAFAVTTDARLFDAVAGAGDTLAAARAEAAWRDAAXXXXXXDGGGVQEMGGAFTDAPALVLLEPTAPILSGDAAAHYSTHTYTGPLARRPLLDWVLATAPPPLTRLVGGPRAGPARVLLTARWLAARSGXXXXXXXXXVPALRVIAFTRGDAAEVAELAAAACALRGAAAFGYVVGGSFEEASAAAACPQQRIASLTKTAQLKLQCAAASPWLPAGVADAAAARAYGVDTTARRRAAAAIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLAMLAAQXXXXXXXXXXXXLLQAETPRAGAASPGSPSSPQ 1100
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A482SI19_9ARCH (Thioredoxin domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI19_9ARCH) HSP 1 Score: 139 bits (350), Expect = 1.460e-31 Identity = 84/241 (34.85%), Postives = 125/241 (51.87%), Query Frame = 1 Query: 2446 VMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAA 3168 + ++ VL+G V +SEPLP K + G R+VG + V++ D L+A+ P CA + L +L A+ SESR+LIA +D +ANDLP++ V YP +LWFPAR KPY ++++P P YW+ +++ GF+ +D SSFD +L + + + +L D A E + + RN R Y P +DW GEVVFDG+RWH+ AA Sbjct: 172 LQDFVVGVLTGLVPKVLKSEPLP-------------KKQSGVAQRVVGSNVLDVVSKIDTDVLLAITVPGCAHCKRLLPAYELLGRAVQSESRILIARIDASANDLPSTWGVSDYPTLLWFPARDKPYKESTVPTPRQYWDAGFSLQELAGFVQRD---------------SSFDPKSLRIATAEQLSSLQGDEDIYRAKFEEEERVQRRNEGRIVYEVPFVDWLLGEVVFDGKRWHLGAA 384
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A7S3XLQ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLQ2_HETAK) HSP 1 Score: 122 bits (307), Expect = 1.630e-26 Identity = 93/282 (32.98%), Postives = 131/282 (46.45%), Query Frame = 1 Query: 2344 AIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYW-EDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLA 3186 A++AHD R+ P T ++M + + VL G ++P+ +SEP+P K G V +LVG +F EV++ G D LV V +P CA S AL +L AL E RV++A +DG ANDLP + V AYP +LWFPA KPY P+P E +++L F+ ++AS A P+ +D L L A +A W LRN R + +D+ G+VVFDG RW I A L+ Sbjct: 77 ALIAHDPAQDTRF---------PSTYEEPLEYDNIMSFMSDVLEGRLKPSFKSEPVP-------------KKNDGPVKKLVGSTFVEEVSKEGVDVLVKVYAPWCAHSAALAPAYELLGRALGGEPRVVVAEIDGAANDLPPHLDVQAYPDLLWFPAADKPYPGKGAPQPRALGREPGRSLQELLAFVRREAS-------------PGGPPLRAATPEQ--LDTLAQEAPALEEQALRRARWALRNKDRVVFEPALVDYLVGDVVFDGCRWMIGLVVALVLS 321
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Match: A0A7S3GYC8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYC8_9STRA) HSP 1 Score: 102 bits (254), Expect = 8.450e-21 Identity = 75/241 (31.12%), Postives = 113/241 (46.89%), Query Frame = 1 Query: 2461 AAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYA--DASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYT-SPRLDWAFGEVVFDGRRWHIAAAFA 3174 A V++G V ++EP+P P V VG + V + G+D L+ V +P C + L +LA A+ +E R++IA ++G ND+P+S V AYP +LWF A K D S P YW+ ++ F+ ++ S FD +L V + + +L A + L E + ++RN R Y SP LD+ GEVVFDG+RWH+A A Sbjct: 1 AGVITGVVPKVVKTEPVPKP-------------SNNLVVTAVGSNVMDIVNQPGKDVLLVVFAPWCTHCKKLLPTYEILARAVQNEPRIVIAKINGETNDIPSSWGVKAYPTLLWFRASDKEAVKGDFSALLPRDYWDAGYSLHELASFVQREGS---------------FDLKSLRVASNEQLASLQGAEEALRVQYEIEERHQMRNMGRVVYEDSPLLDYFLGEVVFDGKRWHVAMTAA 213 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|354258 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17458 ID=mRNA_17458|Name=jgi.p|Trimin1|354258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1188bp|location=Sequence derived from alignment at Contig_222:168696..171108- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCTTATCCTGCCAAAGCCACCAGCAACTCTGACGGTGTGCTGGCCAAback to top protein sequence of jgi.p|Trimin1|354258 >Trimin1|354258|estExt_Genemark1.C_Ctg_2220022 ID=Trimin1|354258|estExt_Genemark1.C_Ctg_2220022|Name=jgi.p|Trimin1|354258|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=240bp MSYPAKATSNSDGVLAKIRCPACVPAGSEHLEGTSTVRSQLPFMEERNFEback to top mRNA from alignment at Contig_222:168696..171108- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17458 ID=mRNA_17458|Name=jgi.p|Trimin1|354258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2413bp|location=Sequence derived from alignment at Contig_222:168696..171108- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_222:168696..171108- >mRNA_17458 ID=mRNA_17458|Name=jgi.p|Trimin1|354258|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=720bp|location=Sequence derived from alignment at Contig_222:168696..171108- (Tribonema minus UTEX_B_3156 )back to top |