mRNA_17436 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A835Z533_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z533_9STRA) HSP 1 Score: 237 bits (604), Expect = 2.230e-79 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 Query: 1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSGG 330 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSGG Sbjct: 1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSGG 110
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A835YPY0_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY0_9STRA) HSP 1 Score: 179 bits (454), Expect = 2.190e-56 Identity = 80/98 (81.63%), Postives = 91/98 (92.86%), Query Frame = 1 Query: 34 VEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 327 +EAP+VI WTS+G+AFGIQDM FRT +LP HFKHDKFSSFQRQLNLYGFRKIVRG+E+GGYMHKDFQRGR DLL HV+RG+MPPCPP+YE+KIYGSG Sbjct: 1 MEAPDVIKWTSSGQAFGIQDMATFRTVILPKHFKHDKFSSFQRQLNLYGFRKIVRGRESGGYMHKDFQRGRLDLLKHVKRGYMPPCPPEYEKKIYGSG 98
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A835YN41_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN41_9STRA) HSP 1 Score: 168 bits (426), Expect = 4.410e-50 Identity = 75/107 (70.09%), Postives = 94/107 (87.85%), Query Frame = 1 Query: 1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYG 321 GFP+VL +ILE E+PE+ITW+STGRAFGI++M F+T++LP +FKHDKFSSFQRQLNLYGFRKIV+G+E+G Y+H FQRG +LL VRRG +PPCPP+YERK+YG Sbjct: 23 GFPYVLISILENESPEIITWSSTGRAFGIRNMAAFKTKILPQYFKHDKFSSFQRQLNLYGFRKIVKGRESGCYIHCYFQRGHPELLKQVRRGQVPPCPPRYERKVYG 129
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A835Z0U6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U6_9STRA) HSP 1 Score: 157 bits (398), Expect = 5.830e-48 Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 1 Query: 1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGS 324 GFPH+L +ILE E+ ++I W+ +GR+FGI++M F+ Q+LP +FKHDKFSSFQRQLNLYGFRKIV+G E+G Y+H F+RG +LL VRRG MPPCPP+YE K+YGS Sbjct: 3 GFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 110
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A6H5L4Y2_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y2_9PHAE) HSP 1 Score: 152 bits (385), Expect = 7.000e-43 Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 1 Query: 1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 327 GFP++L+++L+ EA ++TWTSTG AFGI D F VL ++FKH+KFSSFQRQLNLYGFRKIV+G+E+G YMH F R R DLL VRRG +PPCPP+Y RK+YGSG Sbjct: 6 GFPYILHDLLKNEASAIVTWTSTGTAFGILDNAAFGQDVLSSYFKHNKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPDLLSEVRRGIVPPCPPEYTRKVYGSG 114
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A6H5KNL3_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNL3_9PHAE) HSP 1 Score: 152 bits (385), Expect = 7.430e-41 Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = 1 Query: 1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 327 GFP++LY++L E+P ++ WTSTG AFGI+DM FR VL +FKH+KFSSFQRQLNLYGFRK+V+G+E+G YMH F R + L V+RG +PPCPP Y RKIYGSG Sbjct: 6 GFPYILYDLLNKESPSIVMWTSTGTAFGIRDMASFRQDVLTCYFKHNKFSSFQRQLNLYGFRKVVKGRESGCYMHPSFLRDSPEKLTEVKRGVVPPCPPCYSRKIYGSG 114
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: D7FI12_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI12_ECTSI) HSP 1 Score: 140 bits (354), Expect = 1.180e-38 Identity = 69/128 (53.91%), Postives = 87/128 (67.97%), Query Frame = 1 Query: 1 GFPHVLYNILEV-------------------EAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 327 GFP++L+++L+ EA ++TWTSTG AFGI D F VL ++FKH+KFSSFQRQLNLYGFRKIV+G+E+G YMH F R R +LL VRRG +PPCPP+Y RK+YGSG Sbjct: 6 GFPYILHDLLKTVLPACGTPPSLADNLAFVNEASAIVTWTSTGTAFGILDNAAFGQDVLSSYFKHNKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPEYTRKVYGSG 133
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: D8LU68_ECTSI (Heat Shock transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU68_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.680e-30 Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 1 Query: 16 LYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 327 L+ IL+ E P+VI W+++G+AF I D +F +++P FK +K+SSFQRQLNLYGFRK+VRG EAGGYMH F+RG+ + L VRRG P PP++ ++G G Sbjct: 56 LFQILKTEDPKVIGWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPEIPPEFAHDVHGHG 159
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.290e-29 Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 1 Query: 1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKI 315 F H LY ILE E+ EVI W+ TGRAF I+DM F +QVL +F+H K+SSFQRQLNLYGFRK +G++ GGY H F R R DLLP VRR P PQ +R+ Sbjct: 84 AFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRRT---PQQPQTQREF 185
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A6H5JLW3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW3_9PHAE) HSP 1 Score: 116 bits (291), Expect = 4.660e-28 Identity = 55/110 (50.00%), Postives = 76/110 (69.09%), Query Frame = 1 Query: 16 LYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPP------CPPQYERKIYGSG 327 L+ IL+ E P+VI W+++G+AF I D +F +++P FK +K+SSFQRQLNLYGFRK+VRG EAGGYMH F+RG+ + L VRRG P PP++ ++G G Sbjct: 33 LFQILKTEDPKVIGWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPEEEAFPQIPPEFAHDVHGHG 142 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17436 ID=mRNA_17436|Name=jgi.p|Trimin1|138255|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_222:24459..25266- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGGTTCCCGCATGTTCTCTACAACATTTTGGAGGTGGAGGCACCAGAGGTback to top protein sequence of jgi.p|Trimin1|138255 >Trimin1|138255|gw1.222.45.1 ID=Trimin1|138255|gw1.222.45.1|Name=jgi.p|Trimin1|138255|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSback to top mRNA from alignment at Contig_222:24459..25266- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17436 ID=mRNA_17436|Name=jgi.p|Trimin1|138255|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=808bp|location=Sequence derived from alignment at Contig_222:24459..25266- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_222:24459..25266- >mRNA_17436 ID=mRNA_17436|Name=jgi.p|Trimin1|138255|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_222:24459..25266- (Tribonema minus UTEX_B_3156 )back to top |