mRNA_17436 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138255
Unique NamemRNA_17436
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A835Z533_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z533_9STRA)

HSP 1 Score: 237 bits (604), Expect = 2.230e-79
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1
Query:    1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSGG 330
            GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSGG
Sbjct:    1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSGG 110          
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A835YPY0_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY0_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.190e-56
Identity = 80/98 (81.63%), Postives = 91/98 (92.86%), Query Frame = 1
Query:   34 VEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 327
            +EAP+VI WTS+G+AFGIQDM  FRT +LP HFKHDKFSSFQRQLNLYGFRKIVRG+E+GGYMHKDFQRGR DLL HV+RG+MPPCPP+YE+KIYGSG
Sbjct:    1 MEAPDVIKWTSSGQAFGIQDMATFRTVILPKHFKHDKFSSFQRQLNLYGFRKIVRGRESGGYMHKDFQRGRLDLLKHVKRGYMPPCPPEYEKKIYGSG 98          
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A835YN41_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN41_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.410e-50
Identity = 75/107 (70.09%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYG 321
            GFP+VL +ILE E+PE+ITW+STGRAFGI++M  F+T++LP +FKHDKFSSFQRQLNLYGFRKIV+G+E+G Y+H  FQRG  +LL  VRRG +PPCPP+YERK+YG
Sbjct:   23 GFPYVLISILENESPEIITWSSTGRAFGIRNMAAFKTKILPQYFKHDKFSSFQRQLNLYGFRKIVKGRESGCYIHCYFQRGHPELLKQVRRGQVPPCPPRYERKVYG 129          
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A835Z0U6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U6_9STRA)

HSP 1 Score: 157 bits (398), Expect = 5.830e-48
Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGS 324
            GFPH+L +ILE E+ ++I W+ +GR+FGI++M  F+ Q+LP +FKHDKFSSFQRQLNLYGFRKIV+G E+G Y+H  F+RG  +LL  VRRG MPPCPP+YE K+YGS
Sbjct:    3 GFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 110          
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A6H5L4Y2_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y2_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 7.000e-43
Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 1
Query:    1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 327
            GFP++L+++L+ EA  ++TWTSTG AFGI D   F   VL ++FKH+KFSSFQRQLNLYGFRKIV+G+E+G YMH  F R R DLL  VRRG +PPCPP+Y RK+YGSG
Sbjct:    6 GFPYILHDLLKNEASAIVTWTSTGTAFGILDNAAFGQDVLSSYFKHNKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPDLLSEVRRGIVPPCPPEYTRKVYGSG 114          
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A6H5KNL3_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNL3_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 7.430e-41
Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = 1
Query:    1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 327
            GFP++LY++L  E+P ++ WTSTG AFGI+DM  FR  VL  +FKH+KFSSFQRQLNLYGFRK+V+G+E+G YMH  F R   + L  V+RG +PPCPP Y RKIYGSG
Sbjct:    6 GFPYILYDLLNKESPSIVMWTSTGTAFGIRDMASFRQDVLTCYFKHNKFSSFQRQLNLYGFRKVVKGRESGCYMHPSFLRDSPEKLTEVKRGVVPPCPPCYSRKIYGSG 114          
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: D7FI12_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI12_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.180e-38
Identity = 69/128 (53.91%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 GFPHVLYNILEV-------------------EAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 327
            GFP++L+++L+                    EA  ++TWTSTG AFGI D   F   VL ++FKH+KFSSFQRQLNLYGFRKIV+G+E+G YMH  F R R +LL  VRRG +PPCPP+Y RK+YGSG
Sbjct:    6 GFPYILHDLLKTVLPACGTPPSLADNLAFVNEASAIVTWTSTGTAFGILDNAAFGQDVLSSYFKHNKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPEYTRKVYGSG 133          
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: D8LU68_ECTSI (Heat Shock transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU68_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.680e-30
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 1
Query:   16 LYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 327
            L+ IL+ E P+VI W+++G+AF I D  +F  +++P  FK +K+SSFQRQLNLYGFRK+VRG EAGGYMH  F+RG+ + L  VRRG  P  PP++   ++G G
Sbjct:   56 LFQILKTEDPKVIGWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPEIPPEFAHDVHGHG 159          
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.290e-29
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 1
Query:    1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKI 315
             F H LY ILE E+ EVI W+ TGRAF I+DM  F +QVL  +F+H K+SSFQRQLNLYGFRK  +G++ GGY H  F R R DLLP VRR    P  PQ +R+ 
Sbjct:   84 AFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRRT---PQQPQTQREF 185          
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Match: A0A6H5JLW3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW3_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.660e-28
Identity = 55/110 (50.00%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   16 LYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPP------CPPQYERKIYGSG 327
            L+ IL+ E P+VI W+++G+AF I D  +F  +++P  FK +K+SSFQRQLNLYGFRK+VRG EAGGYMH  F+RG+ + L  VRRG  P        PP++   ++G G
Sbjct:   33 LFQILKTEDPKVIGWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPEEEAFPQIPPEFAHDVHGHG 142          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138255 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z533_9STRA2.230e-79100.00HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A835YPY0_9STRA2.190e-5681.63HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A835YN41_9STRA4.410e-5070.09HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A835Z0U6_9STRA5.830e-4863.89HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A6H5L4Y2_9PHAE7.000e-4364.22HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KNL3_9PHAE7.430e-4162.39HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
D7FI12_ECTSI1.180e-3853.91Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]
D8LU68_ECTSI1.680e-3052.88Heat Shock transcription factor (Partial) (Fragmen... [more]
A0A7S2WKC6_9STRA1.290e-2957.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JLW3_9PHAE4.660e-2850.00HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_222contigContig_222:24459..25266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138255|gw1.222.45.1
Descriptionsequence-specific DNA binding
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota
Evalue7.86e-22
Seed ortholog44056.XP_009038260.1
Hectar predicted targeting categoryother localisation
TranscriptId138577
TrackFilteredModels1
ProteinId138255
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138255gene_17436Tribonema minus UTEX_B_3156 geneContig_222 24459..25266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138255Trimin1|138255|gw1.222.45.1Tribonema minus UTEX_B_3156 polypeptideContig_222 24459..25266 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17436_2exon_17436_2Tribonema minus UTEX_B_3156 exonContig_222 24459..24599 -
exon_17436_1exon_17436_1Tribonema minus UTEX_B_3156 exonContig_222 25078..25266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17436CDS_17436Tribonema minus UTEX_B_3156 CDSContig_222 25078..25266 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17436 ID=mRNA_17436|Name=jgi.p|Trimin1|138255|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_222:24459..25266- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGTTCCCGCATGTTCTCTACAACATTTTGGAGGTGGAGGCACCAGAGGT
TATCACCTGGACATCTACAGGACGTGCGTTTGGCATTCAAGATATGCCGC
GGTTCCGCACACAGGTCCTGCCCACCCACTTCAAGCACGACAAGTTCAGC
AGCTTTCAGCGCCAGCTTAATCTCTATGGCTTTCGGAAGATCGTGCGCGG
CAAGGAGGCCGGCGGTTACATGCACAAGGACTTCCAGCGCGGCCGCGCAG
ACCTCCTGCCGCACGTGCGCCGCGGCCACATGCCGCCGTGCCCGCCGCAG
TACGAGCGCAAGATCTACGGCAGCGGCGGC
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protein sequence of jgi.p|Trimin1|138255

>Trimin1|138255|gw1.222.45.1 ID=Trimin1|138255|gw1.222.45.1|Name=jgi.p|Trimin1|138255|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFS
SFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQ
YERKIYGSGG
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mRNA from alignment at Contig_222:24459..25266-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17436 ID=mRNA_17436|Name=jgi.p|Trimin1|138255|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=808bp|location=Sequence derived from alignment at Contig_222:24459..25266- (Tribonema minus UTEX_B_3156 )
GGGTTCCCGCATGTTCTCTACAACATTTTGGAGGTGGAGGCACCAGAGGT TATCACCTGGACATCTACAGGACGTGCGTTTGGCATTCAAGATATGCCGC GGTTCCGCACACAGGTCCTGCCCACCCACTTCAAGCACGACAAGTTCAGC AGCTTTCAGCGCCAGCTTAATCTCTATGGCTTTCGGAAGGTGAGAGCATG CAGACGTGCAGCTACGCATTATTGGGAACACTGCTAGTGCCCCTGCTAGC GCATGATGCAACATGCCGGTAGCAGCTGGCGCAGCAACAGCACAAAGGCA GAGGCGTCTGCACGCCGCTGCGGCTCGCATCGGTTACGTCGCTTCCAATT CGTGATCGTGCAGCTTGAGTGCTGCAGCGGTGGCTGCGGCGCTGCATGTG CATCGCTTGGCTGCGCGCCGCAGCATCCTACCCCAGCCTTGGTACAAGAA CGCGGCAGCACCATCTTCAACTTGAAGTTGGCATTGCGACGTTAGCGCGC ACATTCACCCGCAACTCAGCGCACGTCATCCTCCCCGCTTGCCGCATGTG CGCCCGTTCCATGCCTTGTGTCATGGCGCGTCTGGCTGCGCGCCCGCGGC CGGCTCACTGCCGCCCGCCGCTGCCGCCGCCGCCGCTGCTGCTGCCGCCG CTGCCCGATTTGCGCAGATCGTGCGCGGCAAGGAGGCCGGCGGTTACATG CACAAGGACTTCCAGCGCGGCCGCGCAGACCTCCTGCCGCACGTGCGCCG CGGCCACATGCCGCCGTGCCCGCCGCAGTACGAGCGCAAGATCTACGGCA GCGGCGGC
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Coding sequence (CDS) from alignment at Contig_222:24459..25266-

>mRNA_17436 ID=mRNA_17436|Name=jgi.p|Trimin1|138255|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_222:24459..25266- (Tribonema minus UTEX_B_3156 )
GGGTTCCCGCATGTTCTCTACAACATTTTGGAGGTGGAGGCACCAGAGGT
TATCACCTGGACATCTACAGGACGTGCGTTTGGCATTCAAGATATGCCGC
GGTTCCGCACACAGGTCCTGCCCACCCACTTCAAGCACGACAAGTTCAGC
AGCTTTCAGCGCCAGCTTAATCTCTATGGCTTTCGGAAGATCGTGCGCGG
CAAGGAGGCCGGCGGTTACATGCACAAGGACTTCCAGCGCGGCCGCGCAG
ACCTCCTGCCGCACGTGCGCCGCGGCCACATGCCGCCGTGCCCGCCGCAG
TACGAGCGCAAGATCTACGGCAGCGGCGGC
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