mRNA_17419 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354058
Unique Name	mRNA_17419
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|354058 vs. uniprot
Match: A0A835Z537_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z537_9STRA)

HSP 1 Score: 1008 bits (2605), Expect = 0.000e+0
Identity = 820/820 (100.00%), Postives = 820/820 (100.00%), Query Frame = 1

Query:    1 MASLQNTAACAVVRDGRLEREGRDLSPDTKDAIWWTCDDILAFRRRAFVFWRLNGRDTLQNAPLDVAVETPLKVPVASKPPAAXXXXXXXXXXXXXXXXXXXATARCKPVLDLSSEDASVRGPMIESPRGVPEAEGLRIRAAINNATRAACAAKAXXXXXXXXXXXXXXXXXXXHGSKLRISDGAASCGSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSDAEELWCRGAQGSDVTALPSPPSHRATSXXXXXXXAHFNWDVTPLQGHFDAPLSPPLSSSLKSRLASIGESDAARGDGFAGAGSXXXXSSAVDSAQVSCAAAAQQWGVCTPLEPRPSACMPQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKLGQASVAARYDGETPVGKQGSLRVKGEDPMDDIIIRNNKDLCIVAGEGPDVSRRHFFLSDEDLAGLSFVTSMPPTRGRPMHLYREEDLLRVACAKFSREGFEAKRLRQHARFAAKWEARMTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEYDRGDDAQRGQAPSTQGAPPALLVGARAQGYVYVPQAPGAAAAPTPAAAHGGGGVVQLYAPSSDAAHTHSNDERGDECGADASCGAPPAAVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEEEQPHPAKRQRXXXXXXXXXXXXXXXXXXXXXXXADALPAPPSPCRAPAAPLLRAAEAAAPPKSDVPQERTAAGNGLWPAISGSRAFQALFSRSQSK 2460
            MASLQNTAACAVVRDGRLEREGRDLSPDTKDAIWWTCDDILAFRRRAFVFWRLNGRDTLQNAPLDVAVETPLKVPVASKPPAAXXXXXXXXXXXXXXXXXXXATARCKPVLDLSSEDASVRGPMIESPRGVPEAEGLRIRAAINNATRAACAAKAXXXXXXXXXXXXXXXXXXXHGSKLRISDGAASCGSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSDAEELWCRGAQGSDVTALPSPPSHRATSXXXXXXXAHFNWDVTPLQGHFDAPLSPPLSSSLKSRLASIGESDAARGDGFAGAGSXXXXSSAVDSAQVSCAAAAQQWGVCTPLEPRPSACMPQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKLGQASVAARYDGETPVGKQGSLRVKGEDPMDDIIIRNNKDLCIVAGEGPDVSRRHFFLSDEDLAGLSFVTSMPPTRGRPMHLYREEDLLRVACAKFSREGFEAKRLRQHARFAAKWEARMTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEYDRGDDAQRGQAPSTQGAPPALLVGARAQGYVYVPQAPGAAAAPTPAAAHGGGGVVQLYAPSSDAAHTHSNDERGDECGADASCGAPPAAVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEEEQPHPAKRQRXXXXXXXXXXXXXXXXXXXXXXXADALPAPPSPCRAPAAPLLRAAEAAAPPKSDVPQERTAAGNGLWPAISGSRAFQALFSRSQSK
Sbjct:    1 MASLQNTAACAVVRDGRLEREGRDLSPDTKDAIWWTCDDILAFRRRAFVFWRLNGRDTLQNAPLDVAVETPLKVPVASKPPAAXXXXXXXXXXXXXXXXXXXATARCKPVLDLSSEDASVRGPMIESPRGVPEAEGLRIRAAINNATRAACAAKAXXXXXXXXXXXXXXXXXXXHGSKLRISDGAASCGSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSDAEELWCRGAQGSDVTALPSPPSHRATSXXXXXXXAHFNWDVTPLQGHFDAPLSPPLSSSLKSRLASIGESDAARGDGFAGAGSXXXXSSAVDSAQVSCAAAAQQWGVCTPLEPRPSACMPQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKLGQASVAARYDGETPVGKQGSLRVKGEDPMDDIIIRNNKDLCIVAGEGPDVSRRHFFLSDEDLAGLSFVTSMPPTRGRPMHLYREEDLLRVACAKFSREGFEAKRLRQHARFAAKWEARMTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEYDRGDDAQRGQAPSTQGAPPALLVGARAQGYVYVPQAPGAAAAPTPAAAHGGGGVVQLYAPSSDAAHTHSNDERGDECGADASCGAPPAAVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEEEQPHPAKRQRXXXXXXXXXXXXXXXXXXXXXXXADALPAPPSPCRAPAAPLLRAAEAAAPPKSDVPQERTAAGNGLWPAISGSRAFQALFSRSQSK 820

[Close]

BLAST of jgi.p|Trimin1|354058 vs. uniprot
Match: A0A836CBH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBH2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.290e-16
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 1

Query: 1342 MDD-IIIRNNKDLCIVAGEGP------DVSRRHFFLSDEDLAGLSFVTSMPPTRGRPMHLYREEDLLRVACAKFSREGFEAKRLRQHAR 1587
            MDD I++RNNKDL  V GEGP        ++  FFL+DEDLAGLSFV+     RGRPMHL+REEDLLR A  KFS EGF++K  RQ  R
Sbjct:    1 MDDHIVVRNNKDLHHVPGEGPLKRWTCTAAKHSFFLTDEDLAGLSFVSDASAKRGRPMHLFREEDLLRAAHDKFSPEGFQSKLKRQRGR 89

[Close]

BLAST of jgi.p|Trimin1|354058 vs. uniprot
Match: A0A836CDD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDD5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.290e-14
Identity = 50/69 (72.46%), Postives = 52/69 (75.36%), Query Frame = -1

Query: 1398 SHFAANRACCRRRLASKPSRENLAHATRSRSSSLYRCMGLPRVGGMLVTKDSPARSSSERKKCLRDTSG 1604
            S F+ NR  CRRRLASKPSREN AHA  SRSSSLYRCMGLPR+   L T DSPARSSSERKK    T G
Sbjct:  520 SFFSTNRLRCRRRLASKPSRENFAHAACSRSSSLYRCMGLPRLAFALGTNDSPARSSSERKKLRCGTQG 588

[Close]

BLAST of jgi.p|Trimin1|354058 vs. uniprot
Match: A0A835YWS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.980e-8
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 1

Query:   70 DLSPDTKDAIWWTCDDILAFRRRAFVFWRLNGRDTLQ-NAPLDVAVETP 213
            D+S   K+AIWWT +DILA RRRA+++W+LNGRDT+Q +APLD A  +P
Sbjct:  149 DMSLALKEAIWWTSEDILAARRRAWIYWQLNGRDTIQQSAPLDTATASP 197

[Close]

BLAST of jgi.p|Trimin1|354058 vs. uniprot
Match: A0A835Z4R8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4R8_9STRA)

HSP 1 Score: 682 bits (1760), Expect = 6.360e-245
Identity = 414/414 (100.00%), Postives = 414/414 (100.00%), Query Frame = 1

Query:    1 MGDSEDMAERGSPLRARNSGKAQGFWSRKLLKRRRSAEVRSVLKEGTEQGAYTTRARLALGAAASLWCLAFVTRSWWPLRVALVALLLEPLLIASALLWWTGQPARSLASDGMAAACSFAAGFWWAAPAAAVASGAMQILLLPALAGVIAVWPLSMPAFDCATAQGCLVPLEGSLMXXXXXXXXXXXDTAAANPAVSGLALAAIAFLGVAAAEQWALSRCCAAGARRDGAQPAAPLRHAVAAAAGMATAKGLVRVMALHPLLLLDGAQDRMSPPFVPTLAPLLVTCAVLQLVDSAXXXXXXXXXXXXXXXXXXXXXXAWRALRWPVALHGAYALLGTVGATCAWPVAATAIARAALVGGAAAAAWRRLLSSPLYDALLDGGGGGSXXXXXXXXXXXDGCEAGAWVELAEMGGDL 1242
            MGDSEDMAERGSPLRARNSGKAQGFWSRKLLKRRRSAEVRSVLKEGTEQGAYTTRARLALGAAASLWCLAFVTRSWWPLRVALVALLLEPLLIASALLWWTGQPARSLASDGMAAACSFAAGFWWAAPAAAVASGAMQILLLPALAGVIAVWPLSMPAFDCATAQGCLVPLEGSLMXXXXXXXXXXXDTAAANPAVSGLALAAIAFLGVAAAEQWALSRCCAAGARRDGAQPAAPLRHAVAAAAGMATAKGLVRVMALHPLLLLDGAQDRMSPPFVPTLAPLLVTCAVLQLVDSAXXXXXXXXXXXXXXXXXXXXXXAWRALRWPVALHGAYALLGTVGATCAWPVAATAIARAALVGGAAAAAWRRLLSSPLYDALLDGGGGGSXXXXXXXXXXXDGCEAGAWVELAEMGGDL
Sbjct:    1 MGDSEDMAERGSPLRARNSGKAQGFWSRKLLKRRRSAEVRSVLKEGTEQGAYTTRARLALGAAASLWCLAFVTRSWWPLRVALVALLLEPLLIASALLWWTGQPARSLASDGMAAACSFAAGFWWAAPAAAVASGAMQILLLPALAGVIAVWPLSMPAFDCATAQGCLVPLEGSLMXXXXXXXXXXXDTAAANPAVSGLALAAIAFLGVAAAEQWALSRCCAAGARRDGAQPAAPLRHAVAAAAGMATAKGLVRVMALHPLLLLDGAQDRMSPPFVPTLAPLLVTCAVLQLVDSAXXXXXXXXXXXXXXXXXXXXXXAWRALRWPVALHGAYALLGTVGATCAWPVAATAIARAALVGGAAAAAWRRLLSSPLYDALLDGGGGGSXXXXXXXXXXXDGCEAGAWVELAEMGGDL 414

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354058 vs. uniprot
BLAST of jgi.p|Trimin1|354058 vs. uniprot

BLAST of jgi.p|Trimin1|354058 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A835Z537_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CBH2_9STRA	1.290e-16	59.55	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CDD5_9STRA	1.290e-14	72.46	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YWS6_9STRA	3.980e-8	61.22	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

BLAST of jgi.p|Trimin1|354058 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z4R8_9STRA	6.360e-245	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_206	contig	Contig_206:99090..105130 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354058\|estExt_Genemark1.C_Ctg_2060011
Hectar predicted targeting category	other localisation
TranscriptId	354380
Track	FilteredModels1
ProteinId	354058

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354058	gene_17419	Tribonema minus UTEX_B_3156	gene	Contig_206 99090..105130 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354058	Trimin1\|354058\|estExt_Genemark1.C_Ctg_2060011	Tribonema minus UTEX_B_3156	polypeptide	Contig_206 99090..104807 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_17419_1	exon_17419_1	Tribonema minus UTEX_B_3156	exon	Contig_206 99090..99154 +
exon_17419_2	exon_17419_2	Tribonema minus UTEX_B_3156	exon	Contig_206 99465..99579 +
exon_17419_3	exon_17419_3	Tribonema minus UTEX_B_3156	exon	Contig_206 99822..100934 +
exon_17419_4	exon_17419_4	Tribonema minus UTEX_B_3156	exon	Contig_206 103330..103454 +
exon_17419_5	exon_17419_5	Tribonema minus UTEX_B_3156	exon	Contig_206 103763..105130 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_17419	CDS_17419	Tribonema minus UTEX_B_3156	CDS	Contig_206 99090..99154 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_17419	UTR3_17419	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_206 104808..105130 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_206:99090..105130+
coding sequence from alignment at Contig_206:99090..105130+

spliced messenger RNA

>mRNA_17419 ID=mRNA_17419|Name=jgi.p|Trimin1|354058|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2786bp|location=Sequence derived from alignment at Contig_206:99090..105130+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGCTGCAAAACACAGCCGCTTGTGCAGTGGTCCGCGACGGGAG
ACTGGAACGGGAAGGAAGGGACCTGAGCCCCGATACCAAGGACGCCATAT
GGTGGACCTGCGATGACATTCTTGCCTTTAGGAGGCGAGCATTCGTGTTT
TGGAGATTAAATGGAAGGGATACCCTGCAGAATGCCCCACTCGACGTCGC
TGTGGAGACGCCCCTGAAGGTTCCAGTGGCATCCAAGCCTCCGGCGGCAG
TCGCTGCCGCTGCCGCCGCCGCCGTGGCAGCGGCAGCAGCGGCTGCGGCG
GTCGCCGCCACCGCTCGCTGCAAGCCAGTGCTGGATCTCAGCTCAGAGGA
CGCGTCAGTGCGTGGACCCATGATTGAGAGTCCGCGTGGCGTGCCGGAGG
CGGAGGGTCTACGCATTCGCGCAGCCATCAACAACGCCACGCGCGCTGCG
TGCGCGGCGAAGGCCGCCGCGGCGGAAGCGGGAACGGCGGCGGCGGTGGC
GGCAGCGGCGGCGGCGACGGCACACGGCTCCAAGCTGCGCATCAGCGATG
GCGCCGCCAGTTGCGGCAGCATCTCGGATGGCTCTTCAGAATCGGCGAGC
GAAGCGGCGTCGCCAGTTGACGCGGGCAGCACCGGCGGCAACAGCAGCGG
CAGCAGCAGCAGCGGCGGCGGCAGCAGCGAGGACAGCGACGCGGAGGAGC
TGTGGTGCCGCGGCGCCCAGGGCTCGGACGTGACAGCCCTGCCGTCGCCG
CCGTCGCACCGCGCAACCAGCGGCGGCGGCGGCGGCGGCGGCGCGCATTT
CAACTGGGACGTGACCCCGCTGCAGGGACACTTTGACGCTCCGCTCTCGC
CGCCTCTCAGTTCATCTTTGAAGTCGCGTCTCGCCAGCATCGGCGAGAGC
GACGCAGCTCGCGGTGACGGTTTCGCGGGCGCCGGCAGCGGCAGCAGTGG
CAGCAGCGCGGTCGATAGCGCGCAGGTCTCGTGCGCTGCCGCTGCTCAGC
AGTGGGGTGTCTGCACCCCTCTGGAGCCACGGCCGTCCGCGTGCATGCCG
CAGAGCAGCAGCAGCAGCAGCAGCAACGGCACTAGCAGCAGCACTAGCAA
TGGCATCGGCGGACAGGGGAGCAGCTGCAGCTGCGGCTGCGGCGGCGGGC
CCAGCTGTGGCAGCAGCGCCGCACACGGAGCAGCAGCAGCAGCAGCAGCA
GCGGCAGCACCGTCGCCTATGCAGCAGCAGCAGCAGCACCAGCCGCAGTT
GAAGCTGGGGCAGGCCAGCGTCGCGGCCCGCTACGATGGGGAGACTCCAG
TGGGCAAGCAGGGCAGCTTGCGCGTGAAGGGAGAGGACCCAATGGATGAC
ATCATCATCCGCAACAACAAGGACCTTTGCATTGTGGCAGGCGAAGGGCC
GGATGTATCGCGCAGGCACTTCTTCCTCTCGGACGAGGACCTGGCGGGGC
TGTCCTTCGTGACCAGCATGCCACCCACGCGGGGCAGGCCCATGCACCTG
TACAGGGAGGAGGACCTGCTGCGCGTGGCGTGCGCCAAGTTCTCGCGCGA
GGGCTTCGAGGCCAAGCGCCTGCGGCAGCACGCGCGGTTCGCGGCGAAGT
GGGAGGCGCGGATGACGGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGGACGCGCAGGCGCAGGAGCTGCAGCAGCAGCACCCCGAGGGGGA
CCCGCAGCGGGCCGCCTCCTTTGCTGCAGCGGCAGCAGGCGCGGCGCCGC
CTGCACAGCACGATGCCGCCGCCGCCGCCGCTGCCGCCGCTGGCGAATAC
GACCGCGGCGACGACGCGCAACGCGGCCAGGCGCCCAGCACGCAGGGAGC
GCCGCCGGCGCTGCTCGTGGGCGCGCGCGCCCAGGGGTATGTATACGTCC
CGCAGGCGCCGGGCGCTGCTGCCGCGCCAACGCCCGCAGCCGCGCACGGC
GGCGGCGGTGTCGTGCAGCTGTACGCGCCCTCTTCCGACGCAGCACACAC
TCACAGCAACGATGAACGCGGCGATGAGTGCGGCGCGGACGCCTCGTGCG
GCGCGCCGCCAGCAGCTGTCGACGCGGCGGCACCGGCGGCGGCGGCGAAG
GCGGCGGCGGAAGCGGTGGAAGCGGCGGCGGCCGCGGAAGCGGTGGAAGC
GGCGGCGGCGCCGGCGGAGGAGGAGCAGCCGCACCCGGCGAAGCGGCAGC
GCCGGATGCCGCCAGAGCAGGGCGCGGAAGATGACGCGCCGCCGGCGCAA
GCCGCTGCGCCGCCGCCTGCAGCAGATGCGCTGCCCGCGCCGCCGTCGCC
GTGCCGCGCCCCCGCAGCGCCGCTGCTGCGCGCTGCGGAAGCTGCGGCGC
CGCCAAAGAGCGACGTGCCGCAGGAGCGCACTGCCGCTGGCAATGGTCTG
TGGCCTGCGATTTCTGGCTCTCGCGCCTTCCAAGCGCTGTTCTCGCGCTC
TCAGAGCAAATGAAAGTGCAGAAGTAAAGAAGGCTTGCTGCTGTATCTAC
TCGTTGTTCAGGACGCGCAGCAAGGGAGGCAAGGCGCCAGCACGTTGTGA
ATGCGCGTATCTCTTGACGTCTGCTGCACGATTGGAAAGAACGCTCATCC
GCTGCTGTACGTGCTACATAAACCTATGTCAGCGCAGGGCTTCCTAGCAC
CCTGCTGACAGATTTGAATATGGCCGGAATCCGCCTGTCCCAGCTGTAGC
AGTCATGACCTGGCGATCGGTTGGCTTGGATTTGAGTGTCTCAGTGTTTT
TGTCAACAGAAGTTCAATGTGACCCCCGTCTTCCAA

protein sequence of jgi.p|Trimin1|354058

>Trimin1|354058|estExt_Genemark1.C_Ctg_2060011 ID=Trimin1|354058|estExt_Genemark1.C_Ctg_2060011|Name=jgi.p|Trimin1|354058|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=821bp
MASLQNTAACAVVRDGRLEREGRDLSPDTKDAIWWTCDDILAFRRRAFVF
WRLNGRDTLQNAPLDVAVETPLKVPVASKPPAAVAAAAAAAVAAAAAAAA
VAATARCKPVLDLSSEDASVRGPMIESPRGVPEAEGLRIRAAINNATRAA
CAAKAAAAEAGTAAAVAAAAAATAHGSKLRISDGAASCGSISDGSSESAS
EAASPVDAGSTGGNSSGSSSSGGGSSEDSDAEELWCRGAQGSDVTALPSP
PSHRATSGGGGGGGAHFNWDVTPLQGHFDAPLSPPLSSSLKSRLASIGES
DAARGDGFAGAGSGSSGSSAVDSAQVSCAAAAQQWGVCTPLEPRPSACMP
QSSSSSSSNGTSSSTSNGIGGQGSSCSCGCGGGPSCGSSAAHGAAAAAAA
AAAPSPMQQQQQHQPQLKLGQASVAARYDGETPVGKQGSLRVKGEDPMDD
IIIRNNKDLCIVAGEGPDVSRRHFFLSDEDLAGLSFVTSMPPTRGRPMHL
YREEDLLRVACAKFSREGFEAKRLRQHARFAAKWEARMTAQQQQQQQQQQ
QQDAQAQELQQQHPEGDPQRAASFAAAAAGAAPPAQHDAAAAAAAAAGEY
DRGDDAQRGQAPSTQGAPPALLVGARAQGYVYVPQAPGAAAAPTPAAAHG
GGGVVQLYAPSSDAAHTHSNDERGDECGADASCGAPPAAVDAAAPAAAAK
AAAEAVEAAAAAEAVEAAAAPAEEEQPHPAKRQRRMPPEQGAEDDAPPAQ
AAAPPPAADALPAPPSPCRAPAAPLLRAAEAAAPPKSDVPQERTAAGNGL
WPAISGSRAFQALFSRSQSK*

mRNA from alignment at Contig_206:99090..105130+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_17419 ID=mRNA_17419|Name=jgi.p|Trimin1|354058|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6041bp|location=Sequence derived from alignment at Contig_206:99090..105130+ (Tribonema minus UTEX_B_3156 )
ATGGCGTCGCTGCAAAACACAGCCGCTTGTGCAGTGGTCCGCGACGGGAG
ACTGGAACGGGAAGGGTGAGGAGGAGCCACTTGCCCGGTCCGCCTCGTGG
GAGCCTCGTTTTTGGAGGGCGCGTGCGCACCAGGCCCCTAAAACTGCCCA
GCCGCCGCGGCCAGGGCGCTCTCGATCAACAGGAGCCCTAGGCGAGCTGC
TGGAGCCGCGCAGCCCCCAGAGCATACTCAGAAGGGCCAGCGTGGCAGTC
AGTACGCCAGCTGCGCACAGCTCTCGCAAATCTCTTCTTGCTGGGCTGGA
TGGCAAGGCCCAGCTCAAACCCCGTCGTCGGGTGCAATTCAACAAGACGG
TCCACGTGCTGCTGGTGCCTAGCAGAAGGGACCTGAGCCCCGATACCAAG
GACGCCATATGGTGGACCTGCGATGACATTCTTGCCTTTAGGAGGCGAGC
ATTCGTGTTTTGGAGATTAAATGGAAGGGATACCCTGCAGGTGAGGCTGA
TGTTCCAACCGGCAATTGGAATATGGCATGACGCGTTAAGATGCGGCGCT
GTATCACTCGAAATTCGCTCGACACTAAGGCTCTGTATCATGCGCAATAG
CCACCATGCTGATACAAGCCGCGTTGGTGCTATTTCTGAGCTTGTATCCT
TCCGGGATGTGAATGAATTCGCAGTCATTCATACAAACGGTTTTTCCCAT
TCATACAAACGGTTTCTCCTGTCCGTACGCAGAATGCCCCACTCGACGTC
GCTGTGGAGACGCCCCTGAAGGTTCCAGTGGCATCCAAGCCTCCGGCGGC
AGTCGCTGCCGCTGCCGCCGCCGCCGTGGCAGCGGCAGCAGCGGCTGCGG
CGGTCGCCGCCACCGCTCGCTGCAAGCCAGTGCTGGATCTCAGCTCAGAG
GACGCGTCAGTGCGTGGACCCATGATTGAGAGTCCGCGTGGCGTGCCGGA
GGCGGAGGGTCTACGCATTCGCGCAGCCATCAACAACGCCACGCGCGCTG
CGTGCGCGGCGAAGGCCGCCGCGGCGGAAGCGGGAACGGCGGCGGCGGTG
GCGGCAGCGGCGGCGGCGACGGCACACGGCTCCAAGCTGCGCATCAGCGA
TGGCGCCGCCAGTTGCGGCAGCATCTCGGATGGCTCTTCAGAATCGGCGA
GCGAAGCGGCGTCGCCAGTTGACGCGGGCAGCACCGGCGGCAACAGCAGC
GGCAGCAGCAGCAGCGGCGGCGGCAGCAGCGAGGACAGCGACGCGGAGGA
GCTGTGGTGCCGCGGCGCCCAGGGCTCGGACGTGACAGCCCTGCCGTCGC
CGCCGTCGCACCGCGCAACCAGCGGCGGCGGCGGCGGCGGCGGCGCGCAT
TTCAACTGGGACGTGACCCCGCTGCAGGGACACTTTGACGCTCCGCTCTC
GCCGCCTCTCAGTTCATCTTTGAAGTCGCGTCTCGCCAGCATCGGCGAGA
GCGACGCAGCTCGCGGTGACGGTTTCGCGGGCGCCGGCAGCGGCAGCAGT
GGCAGCAGCGCGGTCGATAGCGCGCAGGTCTCGTGCGCTGCCGCTGCTCA
GCAGTGGGGTGTCTGCACCCCTCTGGAGCCACGGCCGTCCGCGTGCATGC
CGCAGAGCAGCAGCAGCAGCAGCAGCAACGGCACTAGCAGCAGCACTAGC
AATGGCATCGGCGGACAGGGGAGCAGCTGCAGCTGCGGCTGCGGCGGCGG
GCCCAGCTGTGGCAGCAGCGCCGCACACGGAGCAGCAGCAGCAGCAGCAG
CAGCGGCAGCACCGTCGCCTATGCAGCAGCAGCAGCAGCACCAGCCGCAG
TTGAAGCTGGGGCAGGCCAGCGTCGCGGCCCGCTACGATGGGGAGGTGGG
GGGAGTTTTGGAGCCATAGCCCCCCTGACGCGCCCCCGGCGCCGCTGCTT
CGCTGCTACACATTTTGGGGCAAGCGAGAGGCCCCCCCTTTTGCGCCCCA
TTCCCTTCGGCTCCTCCCATACATACAGGCTTAGATATGCATGTTTTAGA
TGGAGGAGTGGTGGGGTGGGGCGGGGGGGGGGGGGGGGGGGGGGGGCAGC
ACGCAAAGTGATTTTTGCAGGCCCGCGGCTGCCGATCTTCAACTTGAACT
TGCAGCCGCGCGCGCCGCTCTACGGTATTTGCCGCTCCCCCCTCAGGGTT
TTCTGCCGTAGGACAGAGGGTCCGCAAGAGCTAGGGTTTGTGTGTGAGAC
TGTTTGCATGTGCTGCTCCTTTGGAGGCAGCGTTGTCTGCTATGTACGCA
GCCAGTTTCGTGCGCGCGCGTGTACGCACGCACAGAATGCGCGCCCTGGC
CAGTTCCGTTTGCCTGAGAACTGCCACACCGGGGGGAGCGAAATGGGGAG
GGGGGGGGGAGGGGGGGGGGGTCACACGAGGGGCGTACGCGACGCATTGG
GGGCCCCACACACGCCGCAGCGATTCTTTACTTTGCCCCGCACATACATC
TACATAGGTACAGAGGGGTTGGAGTGAATGTACTTTGTGCAACGGCGCTT
GTAGGCACTGCTCTTGTCCCACTTGTGCTGCTGTCCTGGTGCTTGTGGGC
GGTTGTGAATCTGCATGCTGCTGAACAATAGAAACGTGTGGTGGCATCAT
TAAAGTGATCAAGGGTGGGACTCAAACGACAACAAAGCGCTCTGCAGGCA
AAGCGCAGCAGAACGGCAGCATCTGCGCACCGGTGGCAGCACCAGCAGCG
ACGGCATATGCGGCATCCAAGGGTTCAGCGAAGATGGCAGCGGCTACAGC
CGTGCCGCAGCGCCGGCATCACCATTACCGACCGCTGTCACTGCGGCATC
TGTGGTTGCGGCGGAGCCAACTGCGGCTCTGATGGACGTGCGGCTCGCTG
GTTCATCATGTACCGCCGTCACAGCGCTAGCTGCAGCAGGCGACGCAGCG
GTGTGCAAGCAGTGGCAGCCGCGGCTGGGAGTTTGTAGTCTGGTGAGCTG
GCAGCGGTTGCCTGCAGCATTAGTGGCGGCATTGGCAGCTGAACCATATA
TTGAGCTGAGCTGGTGCTCTGGCAGAGGCAGCGGAAGTCATTGCGCTGCC
ATAGGGCGGCATCAGCGCCGCAGCACGACAGGCGCAACGACCACGCAGTC
CAGCGCCAGTGCAACGCGTGCTGCTGCGCTGGCTGGCAGCAGCAGCAGCG
TAGCACCAGCGGTGCTGGCCACGATGACAGTTGGGACTGGTGGCAGCCTG
CGAGCCGCGGCAGCCGCAGTAGCAGCAGCGGCAGCGGTGACAGGCGATGC
AGCCGCTCTCTGATGCATGCGACAGGGTGCGCGCGCAGGTGTTGTCGATA
CATCACATCTTGGTACCTGTACAATTGCGTTGTATCGACAACACCTGCCG
CGCACACCGCAGCAGCGGCCGCCTGTACATACTGCGGGTACAAGGAGGTG
GAAGGTCCCAGCAGCAGTGTTTTCACAACGGTTGCGAGGACGAGTGGCAT
GGAGGTGGCACACTTGCCCTCCATTCGAGCAGATTGCACGCTTGATCGTC
TGGTGCCAGCAGCCCTTTTAGTGTAGCAGCTGCAGGTGGTGGCATCTGCG
GCTGACGGCGCAGTACCAGACTCTCATGGCGCGTGTTCAGGAGAGACGAA
AGGCTCGGGACTCATCTCTAGACTCATCTCTGCCTGGCTGCCTGCATGTA
CGCTGCGTCTCTTTGACTGATGCTCACAATAAAAATCTGACTACGAGGCA
CACACAAGTGCATCGCGGGGGTCACCTCTTTCCCTTGAAGTTCGCCCAGA
GAATGCTTGAACTTCAACAGTAAACTTCAAGTTTTGAACTTCAAAGTTTG
AACTTCAAAGTTCGGGCCCAGAGCAGTTGAGATGAGAAGACAGCTCTATC
ATCCCGTGCTCCTGTGTGCCGTGACGATTCTCGCTGTCGCGAATCTGTAA
GGTTGCAATTGGCAGCCGGGAGCAACACAATAAAGGCACTTCACCTTCGC
GCAGGTTTACCGGATTTTATTCTGCAACACAGCGACTGCGGTGCTTTGGT
TGGCGGTCCAGCAGTTAAAGCTCCGTGAAACTATTCAAAAGCGGTGTACA
GGTCAGTTTGATACAGCAACTCAAGTCGCTGGTACCTCTGTTGCCACTTG
CTGCTTGAACTGGTGTTGTTCCCGCACCTGCCGAGATCTGCCTCGAGGTT
TCGCGGTCTCGCCCCCTCGGAGTTATCTTTTTTTAGCGTGCCATGCACTT
CAGTCTCACTCTTCCGTCTTTCGTCATTTCCGCCTGGCAGACTCCAGTGG
GCAAGCAGGGCAGCTTGCGCGTGAAGGGAGAGGACCCAATGGATGACATC
ATCATCCGCAACAACAAGGACCTTTGCATTGTGGCAGGCGAAGGGCCGGA
TGTATCGCGCAGGCAGTGGGCATGCACGGCGGCAAAGCACAGGCAAGCGC
CGCAGCAGCAGAGCGCACAACGATATGAGCTATCCTCACCGAGCAACGCT
GCCACTCATCACAGCCTTGTGTGTATGTGTATGCCGAAGTTGGCGCTGCC
ACTGCCCACCAACACACGCAGGACTGTATTCACAATCAATCACGCACACA
GAGACCGCCTGTAGCGCGTAGACCAGCGCACAGCTGCAGCCGACCTCCCT
ACGCAAAGCGGGCATGTCATTGCCAGCCGCCTGTGACTCTCCGCTGCCAC
TGCCGCTGCGTCCCCCATTTCAGCTTCTTCCTCTCGGACGAGGACCTGGC
GGGGCTGTCCTTCGTGACCAGCATGCCACCCACGCGGGGCAGGCCCATGC
ACCTGTACAGGGAGGAGGACCTGCTGCGCGTGGCGTGCGCCAAGTTCTCG
CGCGAGGGCTTCGAGGCCAAGCGCCTGCGGCAGCACGCGCGGTTCGCGGC
GAAGTGGGAGGCGCGGATGACGGCCCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGGACGCGCAGGCGCAGGAGCTGCAGCAGCAGCACCCCGAG
GGGGACCCGCAGCGGGCCGCCTCCTTTGCTGCAGCGGCAGCAGGCGCGGC
GCCGCCTGCACAGCACGATGCCGCCGCCGCCGCCGCTGCCGCCGCTGGCG
AATACGACCGCGGCGACGACGCGCAACGCGGCCAGGCGCCCAGCACGCAG
GGAGCGCCGCCGGCGCTGCTCGTGGGCGCGCGCGCCCAGGGGTATGTATA
CGTCCCGCAGGCGCCGGGCGCTGCTGCCGCGCCAACGCCCGCAGCCGCGC
ACGGCGGCGGCGGTGTCGTGCAGCTGTACGCGCCCTCTTCCGACGCAGCA
CACACTCACAGCAACGATGAACGCGGCGATGAGTGCGGCGCGGACGCCTC
GTGCGGCGCGCCGCCAGCAGCTGTCGACGCGGCGGCACCGGCGGCGGCGG
CGAAGGCGGCGGCGGAAGCGGTGGAAGCGGCGGCGGCCGCGGAAGCGGTG
GAAGCGGCGGCGGCGCCGGCGGAGGAGGAGCAGCCGCACCCGGCGAAGCG
GCAGCGCCGGATGCCGCCAGAGCAGGGCGCGGAAGATGACGCGCCGCCGG
CGCAAGCCGCTGCGCCGCCGCCTGCAGCAGATGCGCTGCCCGCGCCGCCG
TCGCCGTGCCGCGCCCCCGCAGCGCCGCTGCTGCGCGCTGCGGAAGCTGC
GGCGCCGCCAAAGAGCGACGTGCCGCAGGAGCGCACTGCCGCTGGCAATG
GTCTGTGGCCTGCGATTTCTGGCTCTCGCGCCTTCCAAGCGCTGTTCTCG
CGCTCTCAGAGCAAATGAAAGTGCAGAAGTAAAGAAGGCTTGCTGCTGTA
TCTACTCGTTGTTCAGGACGCGCAGCAAGGGAGGCAAGGCGCCAGCACGT
TGTGAATGCGCGTATCTCTTGACGTCTGCTGCACGATTGGAAAGAACGCT
CATCCGCTGCTGTACGTGCTACATAAACCTATGTCAGCGCAGGGCTTCCT
AGCACCCTGCTGACAGATTTGAATATGGCCGGAATCCGCCTGTCCCAGCT
GTAGCAGTCATGACCTGGCGATCGGTTGGCTTGGATTTGAGTGTCTCAGT
GTTTTTGTCAACAGAAGTTCAATGTGACCCCCGTCTTCCAA

Coding sequence (CDS) from alignment at Contig_206:99090..105130+

>mRNA_17419 ID=mRNA_17419|Name=jgi.p|Trimin1|354058|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2463bp|location=Sequence derived from alignment at Contig_206:99090..105130+ (Tribonema minus UTEX_B_3156 )
ATGGCGTCGCTGCAAAACACAGCCGCTTGTGCAGTGGTCCGCGACGGGAG
ACTGGAACGGGAAGGAAGGGACCTGAGCCCCGATACCAAGGACGCCATAT
GGTGGACCTGCGATGACATTCTTGCCTTTAGGAGGCGAGCATTCGTGTTT
TGGAGATTAAATGGAAGGGATACCCTGCAGAATGCCCCACTCGACGTCGC
TGTGGAGACGCCCCTGAAGGTTCCAGTGGCATCCAAGCCTCCGGCGGCAG
TCGCTGCCGCTGCCGCCGCCGCCGTGGCAGCGGCAGCAGCGGCTGCGGCG
GTCGCCGCCACCGCTCGCTGCAAGCCAGTGCTGGATCTCAGCTCAGAGGA
CGCGTCAGTGCGTGGACCCATGATTGAGAGTCCGCGTGGCGTGCCGGAGG
CGGAGGGTCTACGCATTCGCGCAGCCATCAACAACGCCACGCGCGCTGCG
TGCGCGGCGAAGGCCGCCGCGGCGGAAGCGGGAACGGCGGCGGCGGTGGC
GGCAGCGGCGGCGGCGACGGCACACGGCTCCAAGCTGCGCATCAGCGATG
GCGCCGCCAGTTGCGGCAGCATCTCGGATGGCTCTTCAGAATCGGCGAGC
GAAGCGGCGTCGCCAGTTGACGCGGGCAGCACCGGCGGCAACAGCAGCGG
CAGCAGCAGCAGCGGCGGCGGCAGCAGCGAGGACAGCGACGCGGAGGAGC
TGTGGTGCCGCGGCGCCCAGGGCTCGGACGTGACAGCCCTGCCGTCGCCG
CCGTCGCACCGCGCAACCAGCGGCGGCGGCGGCGGCGGCGGCGCGCATTT
CAACTGGGACGTGACCCCGCTGCAGGGACACTTTGACGCTCCGCTCTCGC
CGCCTCTCAGTTCATCTTTGAAGTCGCGTCTCGCCAGCATCGGCGAGAGC
GACGCAGCTCGCGGTGACGGTTTCGCGGGCGCCGGCAGCGGCAGCAGTGG
CAGCAGCGCGGTCGATAGCGCGCAGGTCTCGTGCGCTGCCGCTGCTCAGC
AGTGGGGTGTCTGCACCCCTCTGGAGCCACGGCCGTCCGCGTGCATGCCG
CAGAGCAGCAGCAGCAGCAGCAGCAACGGCACTAGCAGCAGCACTAGCAA
TGGCATCGGCGGACAGGGGAGCAGCTGCAGCTGCGGCTGCGGCGGCGGGC
CCAGCTGTGGCAGCAGCGCCGCACACGGAGCAGCAGCAGCAGCAGCAGCA
GCGGCAGCACCGTCGCCTATGCAGCAGCAGCAGCAGCACCAGCCGCAGTT
GAAGCTGGGGCAGGCCAGCGTCGCGGCCCGCTACGATGGGGAGACTCCAG
TGGGCAAGCAGGGCAGCTTGCGCGTGAAGGGAGAGGACCCAATGGATGAC
ATCATCATCCGCAACAACAAGGACCTTTGCATTGTGGCAGGCGAAGGGCC
GGATGTATCGCGCAGGCACTTCTTCCTCTCGGACGAGGACCTGGCGGGGC
TGTCCTTCGTGACCAGCATGCCACCCACGCGGGGCAGGCCCATGCACCTG
TACAGGGAGGAGGACCTGCTGCGCGTGGCGTGCGCCAAGTTCTCGCGCGA
GGGCTTCGAGGCCAAGCGCCTGCGGCAGCACGCGCGGTTCGCGGCGAAGT
GGGAGGCGCGGATGACGGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGGACGCGCAGGCGCAGGAGCTGCAGCAGCAGCACCCCGAGGGGGA
CCCGCAGCGGGCCGCCTCCTTTGCTGCAGCGGCAGCAGGCGCGGCGCCGC
CTGCACAGCACGATGCCGCCGCCGCCGCCGCTGCCGCCGCTGGCGAATAC
GACCGCGGCGACGACGCGCAACGCGGCCAGGCGCCCAGCACGCAGGGAGC
GCCGCCGGCGCTGCTCGTGGGCGCGCGCGCCCAGGGGTATGTATACGTCC
CGCAGGCGCCGGGCGCTGCTGCCGCGCCAACGCCCGCAGCCGCGCACGGC
GGCGGCGGTGTCGTGCAGCTGTACGCGCCCTCTTCCGACGCAGCACACAC
TCACAGCAACGATGAACGCGGCGATGAGTGCGGCGCGGACGCCTCGTGCG
GCGCGCCGCCAGCAGCTGTCGACGCGGCGGCACCGGCGGCGGCGGCGAAG
GCGGCGGCGGAAGCGGTGGAAGCGGCGGCGGCCGCGGAAGCGGTGGAAGC
GGCGGCGGCGCCGGCGGAGGAGGAGCAGCCGCACCCGGCGAAGCGGCAGC
GCCGGATGCCGCCAGAGCAGGGCGCGGAAGATGACGCGCCGCCGGCGCAA
GCCGCTGCGCCGCCGCCTGCAGCAGATGCGCTGCCCGCGCCGCCGTCGCC
GTGCCGCGCCCCCGCAGCGCCGCTGCTGCGCGCTGCGGAAGCTGCGGCGC
CGCCAAAGAGCGACGTGCCGCAGGAGCGCACTGCCGCTGGCAATGGTCTG
TGGCCTGCGATTTCTGGCTCTCGCGCCTTCCAAGCGCTGTTCTCGCGCTC
TCAGAGCAAATGA