Trimin1|354058|estExt_Genemark1.C_Ctg_2060011 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354058
Unique Name	Trimin1\|354058\|estExt_Genemark1.C_Ctg_2060011
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	821

Homology

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BLAST of jgi.p|Trimin1|354058 vs. uniprot
Match: A0A835Z537_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z537_9STRA)

HSP 1 Score: 1008 bits (2605), Expect = 0.000e+0
Identity = 820/820 (100.00%), Postives = 820/820 (100.00%), Query Frame = 0

Query:    1 MASLQNTAACAVVRDGRLEREGRDLSPDTKDAIWWTCDDILAFRRRAFVFWRLNGRDTLQNAPLDVAVETPLKVPVASKPPAAXXXXXXXXXXXXXXXXXXXATARCKPVLDLSSEDASVRGPMIESPRGVPEAEGLRIRAAINNATRAACAAKAXXXXXXXXXXXXXXXXXXXHGSKLRISDGAASCGSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSDAEELWCRGAQGSDVTALPSPPSHRATSXXXXXXXAHFNWDVTPLQGHFDAPLSPPLSSSLKSRLASIGESDAARGDGFAGAGSXXXXSSAVDSAQVSCAAAAQQWGVCTPLEPRPSACMPQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKLGQASVAARYDGETPVGKQGSLRVKGEDPMDDIIIRNNKDLCIVAGEGPDVSRRHFFLSDEDLAGLSFVTSMPPTRGRPMHLYREEDLLRVACAKFSREGFEAKRLRQHARFAAKWEARMTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEYDRGDDAQRGQAPSTQGAPPALLVGARAQGYVYVPQAPGAAAAPTPAAAHGGGGVVQLYAPSSDAAHTHSNDERGDECGADASCGAPPAAVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEEEQPHPAKRQRXXXXXXXXXXXXXXXXXXXXXXXADALPAPPSPCRAPAAPLLRAAEAAAPPKSDVPQERTAAGNGLWPAISGSRAFQALFSRSQSK 820
            MASLQNTAACAVVRDGRLEREGRDLSPDTKDAIWWTCDDILAFRRRAFVFWRLNGRDTLQNAPLDVAVETPLKVPVASKPPAAXXXXXXXXXXXXXXXXXXXATARCKPVLDLSSEDASVRGPMIESPRGVPEAEGLRIRAAINNATRAACAAKAXXXXXXXXXXXXXXXXXXXHGSKLRISDGAASCGSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSDAEELWCRGAQGSDVTALPSPPSHRATSXXXXXXXAHFNWDVTPLQGHFDAPLSPPLSSSLKSRLASIGESDAARGDGFAGAGSXXXXSSAVDSAQVSCAAAAQQWGVCTPLEPRPSACMPQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKLGQASVAARYDGETPVGKQGSLRVKGEDPMDDIIIRNNKDLCIVAGEGPDVSRRHFFLSDEDLAGLSFVTSMPPTRGRPMHLYREEDLLRVACAKFSREGFEAKRLRQHARFAAKWEARMTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEYDRGDDAQRGQAPSTQGAPPALLVGARAQGYVYVPQAPGAAAAPTPAAAHGGGGVVQLYAPSSDAAHTHSNDERGDECGADASCGAPPAAVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEEEQPHPAKRQRXXXXXXXXXXXXXXXXXXXXXXXADALPAPPSPCRAPAAPLLRAAEAAAPPKSDVPQERTAAGNGLWPAISGSRAFQALFSRSQSK
Sbjct:    1 MASLQNTAACAVVRDGRLEREGRDLSPDTKDAIWWTCDDILAFRRRAFVFWRLNGRDTLQNAPLDVAVETPLKVPVASKPPAAXXXXXXXXXXXXXXXXXXXATARCKPVLDLSSEDASVRGPMIESPRGVPEAEGLRIRAAINNATRAACAAKAXXXXXXXXXXXXXXXXXXXHGSKLRISDGAASCGSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSDAEELWCRGAQGSDVTALPSPPSHRATSXXXXXXXAHFNWDVTPLQGHFDAPLSPPLSSSLKSRLASIGESDAARGDGFAGAGSXXXXSSAVDSAQVSCAAAAQQWGVCTPLEPRPSACMPQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKLGQASVAARYDGETPVGKQGSLRVKGEDPMDDIIIRNNKDLCIVAGEGPDVSRRHFFLSDEDLAGLSFVTSMPPTRGRPMHLYREEDLLRVACAKFSREGFEAKRLRQHARFAAKWEARMTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEYDRGDDAQRGQAPSTQGAPPALLVGARAQGYVYVPQAPGAAAAPTPAAAHGGGGVVQLYAPSSDAAHTHSNDERGDECGADASCGAPPAAVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEEEQPHPAKRQRXXXXXXXXXXXXXXXXXXXXXXXADALPAPPSPCRAPAAPLLRAAEAAAPPKSDVPQERTAAGNGLWPAISGSRAFQALFSRSQSK 820

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BLAST of jgi.p|Trimin1|354058 vs. uniprot
Match: A0A836CBH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBH2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.030e-16
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 0

Query:  448 MDD-IIIRNNKDLCIVAGEGP------DVSRRHFFLSDEDLAGLSFVTSMPPTRGRPMHLYREEDLLRVACAKFSREGFEAKRLRQHAR 529
            MDD I++RNNKDL  V GEGP        ++  FFL+DEDLAGLSFV+     RGRPMHL+REEDLLR A  KFS EGF++K  RQ  R
Sbjct:    1 MDDHIVVRNNKDLHHVPGEGPLKRWTCTAAKHSFFLTDEDLAGLSFVSDASAKRGRPMHLFREEDLLRAAHDKFSPEGFQSKLKRQRGR 89

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BLAST of jgi.p|Trimin1|354058 vs. uniprot
Match: A0A835YWS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.350e-8
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 0

Query:   24 DLSPDTKDAIWWTCDDILAFRRRAFVFWRLNGRDTLQ-NAPLDVAVETP 71
            D+S   K+AIWWT +DILA RRRA+++W+LNGRDT+Q +APLD A  +P
Sbjct:  149 DMSLALKEAIWWTSEDILAARRRAWIYWQLNGRDTIQQSAPLDTATASP 197

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354058 vs. uniprot

BLAST of jgi.p|Trimin1|354058 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835Z537_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CBH2_9STRA	1.030e-16	59.55	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YWS6_9STRA	3.350e-8	61.22	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 531..562
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 404..423
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 658..680
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 537..567
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 749..771
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 716..820
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 725..741
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 537..620
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 404..419
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..268

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_206	contig	Contig_206:99090..104807 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354058	mRNA_17419	Tribonema minus UTEX_B_3156	mRNA	Contig_206 99090..105130 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354058|estExt_Genemark1.C_Ctg_2060011 ID=Trimin1|354058|estExt_Genemark1.C_Ctg_2060011|Name=jgi.p|Trimin1|354058|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=821bp
MASLQNTAACAVVRDGRLEREGRDLSPDTKDAIWWTCDDILAFRRRAFVF
WRLNGRDTLQNAPLDVAVETPLKVPVASKPPAAVAAAAAAAVAAAAAAAA
VAATARCKPVLDLSSEDASVRGPMIESPRGVPEAEGLRIRAAINNATRAA
CAAKAAAAEAGTAAAVAAAAAATAHGSKLRISDGAASCGSISDGSSESAS
EAASPVDAGSTGGNSSGSSSSGGGSSEDSDAEELWCRGAQGSDVTALPSP
PSHRATSGGGGGGGAHFNWDVTPLQGHFDAPLSPPLSSSLKSRLASIGES
DAARGDGFAGAGSGSSGSSAVDSAQVSCAAAAQQWGVCTPLEPRPSACMP
QSSSSSSSNGTSSSTSNGIGGQGSSCSCGCGGGPSCGSSAAHGAAAAAAA
AAAPSPMQQQQQHQPQLKLGQASVAARYDGETPVGKQGSLRVKGEDPMDD
IIIRNNKDLCIVAGEGPDVSRRHFFLSDEDLAGLSFVTSMPPTRGRPMHL
YREEDLLRVACAKFSREGFEAKRLRQHARFAAKWEARMTAQQQQQQQQQQ
QQDAQAQELQQQHPEGDPQRAASFAAAAAGAAPPAQHDAAAAAAAAAGEY
DRGDDAQRGQAPSTQGAPPALLVGARAQGYVYVPQAPGAAAAPTPAAAHG
GGGVVQLYAPSSDAAHTHSNDERGDECGADASCGAPPAAVDAAAPAAAAK
AAAEAVEAAAAAEAVEAAAAPAEEEQPHPAKRQRRMPPEQGAEDDAPPAQ
AAAPPPAADALPAPPSPCRAPAAPLLRAAEAAAPPKSDVPQERTAAGNGL
WPAISGSRAFQALFSRSQSK*