mRNA_17339 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135806
Unique NamemRNA_17339
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135806 vs. uniprot
Match: A0A836CI78_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI78_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.660e-14
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 KPFKCDVEGCGAAFTTSGSLVSHRRTHTGEK 93
            KPFKCDVEGCGAAFTTSGSLVSHRRTHTGEK
Sbjct:    1 KPFKCDVEGCGAAFTTSGSLVSHRRTHTGEK 31
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135806 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CI78_9STRA2.660e-14100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_189contigContig_189:51498..51752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135806|gw1.189.31.1
BRITEko00000,ko03000
KEGG koko:K09467
GOsGO:0000003,GO:0000122,GO:0000429,GO:0000430,GO:0000433,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001076,GO:0001078,GO:0001085,GO:0001103,GO:0001191,GO:0001227,GO:0001410,GO:0002831,GO:0002832,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0006972,GO:0007124,GO:0007154,GO:0007155,GO:0007584,GO:0008134,GO:0008150,GO:0009267,GO:0009268,GO:0009372,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010570,GO:0010605,GO:0010629,GO:0016049,GO:0019216,GO:0019219,GO:0019222,GO:0019747,GO:0019954,GO:0022610,GO:0030154,GO:0030435,GO:0030436,GO:0030447,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031589,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032502,GO:0033554,GO:0035690,GO:0036170,GO:0036171,GO:0036176,GO:0036177,GO:0036178,GO:0036180,GO:0036244,GO:0040007,GO:0040008,GO:0042221,GO:0042493,GO:0042538,GO:0042594,GO:0042710,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043708,GO:0043709,GO:0043934,GO:0043936,GO:0044010,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044212,GO:0044403,GO:0044419,GO:0044424,GO:0044464,GO:0044764,GO:0045013,GO:0045014,GO:0045827,GO:0045833,GO:0045892,GO:0045926,GO:0045934,GO:0045990,GO:0046015,GO:0047484,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0051716,GO:0060255,GO:0060258,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0065007,GO:0070491,GO:0070783,GO:0070784,GO:0070785,GO:0070887,GO:0071214,GO:0071310,GO:0071467,GO:0071470,GO:0071472,GO:0071474,GO:0071475,GO:0071496,GO:0080090,GO:0080134,GO:0080135,GO:0090604,GO:0090605,GO:0090606,GO:0090609,GO:0097159,GO:0097315,GO:0097316,GO:0104004,GO:0106049,GO:0140110,GO:1900067,GO:1900068,GO:1900069,GO:1900070,GO:1900428,GO:1900429,GO:1900434,GO:1900435,GO:1900437,GO:1900438,GO:1900440,GO:1900441,GO:1900443,GO:1900444,GO:1900460,GO:1900463,GO:1900464,GO:1900741,GO:1900742,GO:1901000,GO:1901001,GO:1901363,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000217,GO:2000218,GO:2001141
Preferred nameNRG1
DescriptionZinc finger, C2H2 type
COG categoryS
Max annot lvl4751|Fungi
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,3A8DQ@33154|Opisthokonta,3P6MW@4751|Fungi,3V26I@5204|Basidiomycota,2YG2B@29000|Pucciniomycotina
Evalue2.31e-05
Seed ortholog5297.GMQ_05994T0
Hectar predicted targeting categoryother localisation
TranscriptId136128
TrackFilteredModels1
ProteinId135806
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135806gene_17339Tribonema minus UTEX_B_3156 geneContig_189 51498..51752 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17339_1exon_17339_1Tribonema minus UTEX_B_3156 exonContig_189 51498..51752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17339CDS_17339Tribonema minus UTEX_B_3156 CDSContig_189 51498..51752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135806Trimin1|135806|gw1.189.31.1Tribonema minus UTEX_B_3156 polypeptideContig_189 51498..51752 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17339 ID=mRNA_17339|Name=jgi.p|Trimin1|135806|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_189:51498..51752+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCCGTTCAAGTGTGATGTTGAGGGTTGTGGTGCAGCCTTCACTACTTC
CGGCAGCCTCGTCTCTCACCGGCGCACCCACACCGGCGAGAAGCCGTTCG
TCTGCGATATTGGGGGGTGTGGTGCGGCCTTCACTACGTCCAGTCAGCTC
ATCGTCCACACGCGCATCCATAGCAACGAGAAGCCGTTTTCCTGTGACTT
CGAGGGATGCGATGCGGCATTCGCGCAGTCCAGCCACCTCGTCACGCACA
AGCAG
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protein sequence of jgi.p|Trimin1|135806

>Trimin1|135806|gw1.189.31.1 ID=Trimin1|135806|gw1.189.31.1|Name=jgi.p|Trimin1|135806|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp
KPFKCDVEGCGAAFTTSGSLVSHRRTHTGEKPFVCDIGGCGAAFTTSSQL
IVHTRIHSNEKPFSCDFEGCDAAFAQSSHLVTHKQ
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mRNA from alignment at Contig_189:51498..51752+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17339 ID=mRNA_17339|Name=jgi.p|Trimin1|135806|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_189:51498..51752+ (Tribonema minus UTEX_B_3156 )
AAGCCGTTCAAGTGTGATGTTGAGGGTTGTGGTGCAGCCTTCACTACTTC
CGGCAGCCTCGTCTCTCACCGGCGCACCCACACCGGCGAGAAGCCGTTCG
TCTGCGATATTGGGGGGTGTGGTGCGGCCTTCACTACGTCCAGTCAGCTC
ATCGTCCACACGCGCATCCATAGCAACGAGAAGCCGTTTTCCTGTGACTT
CGAGGGATGCGATGCGGCATTCGCGCAGTCCAGCCACCTCGTCACGCACA
AGCAG
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Coding sequence (CDS) from alignment at Contig_189:51498..51752+

>mRNA_17339 ID=mRNA_17339|Name=jgi.p|Trimin1|135806|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_189:51498..51752+ (Tribonema minus UTEX_B_3156 )
AAGCCGTTCAAGTGTGATGTTGAGGGTTGTGGTGCAGCCTTCACTACTTC
CGGCAGCCTCGTCTCTCACCGGCGCACCCACACCGGCGAGAAGCCGTTCG
TCTGCGATATTGGGGGGTGTGGTGCGGCCTTCACTACGTCCAGTCAGCTC
ATCGTCCACACGCGCATCCATAGCAACGAGAAGCCGTTTTCCTGTGACTT
CGAGGGATGCGATGCGGCATTCGCGCAGTCCAGCCACCTCGTCACGCACA
AGCAG
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